U.S. flag

An official website of the United States government

Arabidopsis thaliana lectin receptor kinase a4.1 (LECRKA4.1), mRNA

NCBI Reference Sequence: NM_120232.2

FASTA Graphics 

LOCUS       NM_120232               2494 bp    mRNA    linear   PLN 20-OCT-2022
DEFINITION  Arabidopsis thaliana lectin receptor kinase a4.1 (LECRKA4.1), mRNA.
ACCESSION   NM_120232
VERSION     NM_120232.2
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (bases 1 to 2494)
  AUTHORS   Tabata,S., Kaneko,T., Nakamura,Y., Kotani,H., Kato,T., Asamizu,E.,
            Miyajima,N., Sasamoto,S., Kimura,T., Hosouchi,T., Kawashima,K.,
            Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
            Nakazaki,N., Naruo,K., Okumura,S., Shinpo,S., Takeuchi,C., Wada,T.,
            Watanabe,A., Yamada,M., Yasuda,M., Sato,S., de la Bastide,M.,
            Huang,E., Spiegel,L., Gnoj,L., O'Shaughnessy,A., Preston,R.,
            Habermann,K., Murray,J., Johnson,D., Rohlfing,T., Nelson,J.,
            Stoneking,T., Pepin,K., Spieth,J., Sekhon,M., Armstrong,J.,
            Becker,M., Belter,E., Cordum,H., Cordes,M., Courtney,L.,
            Courtney,W., Dante,M., Du,H., Edwards,J., Fryman,J., Haakensen,B.,
            Lamar,E., Latreille,P., Leonard,S., Meyer,R., Mulvaney,E.,
            Ozersky,P., Riley,A., Strowmatt,C., Wagner-McPherson,C., Wollam,A.,
            Yoakum,M., Bell,M., Dedhia,N., Parnell,L., Shah,R., Rodriguez,M.,
            See,L.H., Vil,D., Baker,J., Kirchoff,K., Toth,K., King,L.,
            Bahret,A., Miller,B., Marra,M., Martienssen,R., McCombie,W.R.,
            Wilson,R.K., Murphy,G., Bancroft,I., Volckaert,G., Wambutt,R.,
            Dusterhoft,A., Stiekema,W., Pohl,T., Entian,K.D., Terryn,N.,
            Hartley,N., Bent,E., Johnson,S., Langham,S.A., McCullagh,B.,
            Robben,J., Grymonprez,B., Zimmermann,W., Ramsperger,U., Wedler,H.,
            Balke,K., Wedler,E., Peters,S., van Staveren,M., Dirkse,W.,
            Mooijman,P., Lankhorst,R.K., Weitzenegger,T., Bothe,G., Rose,M.,
            Hauf,J., Berneiser,S., Hempel,S., Feldpausch,M., Lamberth,S.,
            Villarroel,R., Gielen,J., Ardiles,W., Bents,O., Lemcke,K.,
            Kolesov,G., Mayer,K., Rudd,S., Schoof,H., Schueller,C.,
            Zaccaria,P., Mewes,H.W., Bevan,M. and Fransz,P.
  CONSRTM   Kazusa DNA Research Institute; Cold Spring Harbor and Washington
            University in St Louis Sequencing Consortium; European Union
            Arabidopsis Genome Sequencing Consortium
  TITLE     Sequence and analysis of chromosome 5 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 408 (6814), 823-826 (2000)
   PUBMED   11130714
REFERENCE   2  (bases 1 to 2494)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 2494)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (bases 1 to 2494)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            This record is derived from an annotated genomic sequence
            (NC_003076).
            
            On May 13, 2003 this sequence version replaced NM_120232.1.
FEATURES             Location/Qualifiers
     source          1..2494
                     /organism="Arabidopsis thaliana"
                     /mol_type="mRNA"
                     /db_xref="taxon:3702"
                     /chromosome="5"
                     /ecotype="Columbia"
     gene            1..2494
                     /gene="LECRKA4.1"
                     /locus_tag="AT5G01540"
                     /gene_synonym="F7A7.60; F7A7_60; L-type lectin receptor
                     kinase-VI.2; LecRK-VI.2; lectin receptor kinase a4.1"
                     /note="Encodes LecRKA4.1, a member of the lectin receptor
                     kinase subfamily A4 (LecRKA4.1 At5g01540; LecRKA4.2
                     At5g01550; LecRKA4.3 At5g01560). Together with other
                     members of the subfamily, functions redundantly in the
                     negative regulation of ABA response in seed germination.
                     Positively regulates pattern-triggered immunity."
                     /db_xref="Araport:AT5G01540"
                     /db_xref="GeneID:831722"
                     /db_xref="TAIR:AT5G01540"
     CDS             140..2188
                     /gene="LECRKA4.1"
                     /locus_tag="AT5G01540"
                     /gene_synonym="F7A7.60; F7A7_60; L-type lectin receptor
                     kinase-VI.2; LecRK-VI.2; lectin receptor kinase a4.1"
                     /inference="Similar to RNA sequence,
                     EST:INSD:EH802774.1,INSD:EL292499.1,INSD:R64824.1,
                     INSD:BP816100.2,INSD:AV829852.1,INSD:BP815877.2,
                     INSD:AV808896.1,INSD:BP592177.1,INSD:BP592187.1,
                     INSD:BP829512.2,INSD:AU239076.2,INSD:N97302.1,
                     INSD:BP648184.1,INSD:EH913539.1,INSD:EL144779.1,
                     INSD:AU036593.1,INSD:EL249303.1,INSD:BP651454.1,
                     INSD:BP642570.1,INSD:BP645106.1,INSD:EH939393.1,
                     INSD:EL139251.1,INSD:BP653054.1,INSD:BP831842.1,
                     INSD:AU230346.1,INSD:BP835046.1,INSD:EL331798.1,
                     INSD:BP644703.1,INSD:AV827157.1,INSD:AI993877.1,
                     INSD:AV797394.1"
                     /inference="similar to RNA sequence,
                     mRNA:INSD:AF361597.1,INSD:BT000489.1"
                     /note="lectin receptor kinase a4.1 (LECRKA4.1); FUNCTIONS
                     IN: kinase activity; INVOLVED IN: N-terminal protein
                     myristoylation, abscisic acid mediated signaling pathway,
                     response to abscisic acid stimulus, seed germination;
                     LOCATED IN: plasma membrane; EXPRESSED IN: 17 plant
                     structures; EXPRESSED DURING: 10 growth stages; CONTAINS
                     InterPro DOMAIN/s: Legume lectin, beta chain
                     (InterPro:IPR001220), Protein kinase, ATP binding site
                     (InterPro:IPR017441), Serine/threonine-protein kinase-like
                     domain (InterPro:IPR017442), Concanavalin A-like
                     lectin/glucanase, subgroup (InterPro:IPR013320), Protein
                     kinase-like domain (InterPro:IPR011009),
                     Serine/threonine-protein kinase, active site
                     (InterPro:IPR008271), Protein kinase, catalytic domain
                     (InterPro:IPR000719), Concanavalin A-like lectin/glucanase
                     (InterPro:IPR008985); BEST Arabidopsis thaliana protein
                     match is: lectin receptor kinase a4.1 (TAIR:AT5G01550.1);
                     Has 1807 Blast hits to 1807 proteins in 277 species:
                     Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347;
                     Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source:
                     NCBI BLink)."
                     /codon_start=1
                     /product="lectin receptor kinase a4.1"
                     /protein_id="NP_195774.1"
                     /db_xref="GeneID:831722"
                     /db_xref="TAIR:AT5G01540"
                     /db_xref="Araport:AT5G01540"
                     /translation="MGTQRSMFIVSFLFKLFLFLSVHVRAQRTTTNFAFRGFNGNQSK
                     IRIEGAAMIKPDGLLRLTDRKSNVTGTAFYHKPVRLLNRNSTNVTIRSFSTSFVFVII
                     PSSSSNKGFGFTFTLSPTPYRLNAGSAQYLGVFNKENNGDPRNHVFAVEFDTVQGSRD
                     DNTDRIGNDIGLNYNSRTSDLQEPVVYYNNDDHNKKEDFQLESGNPIQALLEYDGATQ
                     MLNVTVYPARLGFKPTKPLISQHVPKLLEIVQEEMYVGFTASTGKGQSSAHYVMGWSF
                     SSGGERPIADVLILSELPPPPPNKAKKEGLNSQVIVMIVALSAVMLVMLVLLFFFVMY
                     KKRLGQEETLEDWEIDHPRRLRYRDLYVATDGFKKTGIIGTGGFGTVFKGKLPNSDPI
                     AVKKIIPSSRQGVREFVAEIESLGKLRHKNLVNLQGWCKHKNDLLLIYDYIPNGSLDS
                     LLYTVPRRSGAVLSWNARFQIAKGIASGLLYLHEEWEKIVIHRDVKPSNVLIDSKMNP
                     RLGDFGLARLYERGTLSETTALVGTIGYMAPELSRNGNPSSASDVFAFGVLLLEIVCG
                     RKPTDSGTFFLVDWVMELHANGEILSAIDPRLGSGYDGGEARLALAVGLLCCHQKPAS
                     RPSMRIVLRYLNGEENVPEIDDEWGYSKSSRSEFGSKLVGYVSSTSITRVSSTSRISQ
                     "
ORIGIN      
        1 tggtataatt ttcatcttct ttgactcatt agaatctgaa agaaaaaaaa caaactctca
       61 tctcatgtcc ataaaagaaa ttatctaaca aagaactctt caaagtatct ctttatctcc
      121 ttctttactt cgctcaccca tgggcacaca aagatccatg ttcatagtct cattcttatt
      181 caagcttttc ctgtttttga gcgtccatgt tcgagctcag agaacaacaa caaattttgc
      241 tttccgaggt tttaacggaa accaatcgaa gattcggatt gaaggagccg cgatgatcaa
      301 acccgacgga ctattgagac tcactgaccg aaagtcgaat gttaccggta cagctttcta
      361 ccacaaaccg gtgaggttgc ttaatagaaa ttccacaaac gtcacaattc gttcctttag
      421 cacgtctttc gtctttgtca taatcccttc aagctcaagc aataaaggct ttggattcac
      481 attcacacta tctccaacac cttatcgtct caatgctgga tccgcacagt acttgggagt
      541 tttcaacaaa gagaacaatg gggatcctag gaaccacgta ttcgcagtgg aattcgacac
      601 ggtgcaagga tcaagagacg acaacaccga cagaatagga aacgacatcg gtctgaatta
      661 caacagtcgt acttcggatc tccaagaacc agtcgtgtat tacaacaatg atgatcacaa
      721 caaaaaagaa gatttccagc ttgagagtgg caatcctatt caagcccttt tggagtatga
      781 tggagcaaca caaatgctaa acgtcaccgt ttatcccgcg agattagggt ttaaacccac
      841 aaagcctttg atctctcaac atgttccaaa actgttggag attgtgcaag aagaaatgta
      901 cgtcggattc acggcatcga cggggaaagg tcagtcaagt gctcattacg tgatgggttg
      961 gagtttctca agcggcggag aacgtccaat tgcggatgtt ctaatcctct cggagcttcc
     1021 tccgccgccg ccgaataagg cgaagaagga aggtttaaat tctcaagtca ttgttatgat
     1081 cgtggcgtta tcggcagtaa tgctggtcat gcttgtgtta ctcttcttct tcgtcatgta
     1141 caagaagaga ctgggacaag aagagactct tgaagactgg gaaatcgatc atcctcgcag
     1201 attgagatac agagacctct acgtagccac ggatggattc aaaaagactg gaatcatcgg
     1261 aaccggagga tttggaaccg ttttcaaagg aaaactgccg aattcggatc ccatcgcagt
     1321 gaagaagata attccaagta gcaggcaagg tgttcgagaa tttgtcgcag agatcgagag
     1381 tttggggaaa ctaaggcata agaatctggt gaacctccaa ggatggtgca aacacaaaaa
     1441 cgatctcttg ttgatttacg attacatccc caacggaagc ttagactctc tgctctacac
     1501 tgtaccgaga agaagcggcg ccgttttgtc gtggaacgct cgttttcaga tcgctaaagg
     1561 aatcgcgtct ggtttattgt atcttcacga agaatgggag aagattgtga ttcatagaga
     1621 cgtgaaacct agcaatgtct tgatcgattc aaagatgaac cctagattgg gagattttgg
     1681 actcgcgagg ctttacgaac gcggaacgct atcggaaaca acagcactcg ttggaaccat
     1741 cgggtacatg gcgccagagc tttcccgcaa cggaaacccc tcatctgcgt ctgatgtttt
     1801 cgcgtttggc gttttgttgt tagagatcgt ttgcgggaga aaaccaacgg attccggtac
     1861 cttcttcttg gtcgattggg ttatggagct tcacgcgaac ggtgagattc tcagtgcgat
     1921 tgatccgaga ctaggatctg gttacgacgg aggagaagca aggcttgctc tcgccgtcgg
     1981 attgctctgt tgccaccaaa aaccggcgtc tcggccgtcg atgagaatcg tgcttaggta
     2041 tctaaacgga gaggagaatg tacctgagat tgacgatgag tggggatatt caaagtcttc
     2101 aagaagcgaa ttcggatcca agttggtagg atatgtttcg tcgacctcaa tcaccagagt
     2161 ttcttcgact tctcgtatca gtcagtagtg gataaagcac attcactttt ttgcttcgaa
     2221 ttagtcaaat cgtttagctt caaaagacca aaacatgatt taactagtac ttatgattaa
     2281 tgaacaatag tataaaataa atttgttgga atgtctatag ctaaaagttt ctgaaatgaa
     2341 tgtggcgggg aggtaaaacc ttaatatata attttttcgt gacgtcacac agattagtca
     2401 tactatcaaa aaaattaaaa ttagtatttt gtaacgtcac aaagattact catacagtta
     2461 tgattttttt atataaaatt actgtatgtt ttgc
//
Feature
Display: FASTA GenBank Help
Details

Supplemental Content

Change region shown

Customize view

Reference sequence information

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
External link. Please review our privacy policy.