LOCUS NM_120232 2494 bp mRNA linear PLN 20-OCT-2022
DEFINITION Arabidopsis thaliana lectin receptor kinase a4.1 (LECRKA4.1), mRNA.
ACCESSION NM_120232
VERSION NM_120232.2
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 2494)
AUTHORS Tabata,S., Kaneko,T., Nakamura,Y., Kotani,H., Kato,T., Asamizu,E.,
Miyajima,N., Sasamoto,S., Kimura,T., Hosouchi,T., Kawashima,K.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Naruo,K., Okumura,S., Shinpo,S., Takeuchi,C., Wada,T.,
Watanabe,A., Yamada,M., Yasuda,M., Sato,S., de la Bastide,M.,
Huang,E., Spiegel,L., Gnoj,L., O'Shaughnessy,A., Preston,R.,
Habermann,K., Murray,J., Johnson,D., Rohlfing,T., Nelson,J.,
Stoneking,T., Pepin,K., Spieth,J., Sekhon,M., Armstrong,J.,
Becker,M., Belter,E., Cordum,H., Cordes,M., Courtney,L.,
Courtney,W., Dante,M., Du,H., Edwards,J., Fryman,J., Haakensen,B.,
Lamar,E., Latreille,P., Leonard,S., Meyer,R., Mulvaney,E.,
Ozersky,P., Riley,A., Strowmatt,C., Wagner-McPherson,C., Wollam,A.,
Yoakum,M., Bell,M., Dedhia,N., Parnell,L., Shah,R., Rodriguez,M.,
See,L.H., Vil,D., Baker,J., Kirchoff,K., Toth,K., King,L.,
Bahret,A., Miller,B., Marra,M., Martienssen,R., McCombie,W.R.,
Wilson,R.K., Murphy,G., Bancroft,I., Volckaert,G., Wambutt,R.,
Dusterhoft,A., Stiekema,W., Pohl,T., Entian,K.D., Terryn,N.,
Hartley,N., Bent,E., Johnson,S., Langham,S.A., McCullagh,B.,
Robben,J., Grymonprez,B., Zimmermann,W., Ramsperger,U., Wedler,H.,
Balke,K., Wedler,E., Peters,S., van Staveren,M., Dirkse,W.,
Mooijman,P., Lankhorst,R.K., Weitzenegger,T., Bothe,G., Rose,M.,
Hauf,J., Berneiser,S., Hempel,S., Feldpausch,M., Lamberth,S.,
Villarroel,R., Gielen,J., Ardiles,W., Bents,O., Lemcke,K.,
Kolesov,G., Mayer,K., Rudd,S., Schoof,H., Schueller,C.,
Zaccaria,P., Mewes,H.W., Bevan,M. and Fransz,P.
CONSRTM Kazusa DNA Research Institute; Cold Spring Harbor and Washington
University in St Louis Sequencing Consortium; European Union
Arabidopsis Genome Sequencing Consortium
TITLE Sequence and analysis of chromosome 5 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 823-826 (2000)
PUBMED 11130714
REFERENCE 2 (bases 1 to 2494)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 2494)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (bases 1 to 2494)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
This record is derived from an annotated genomic sequence
(NC_003076).
On May 13, 2003 this sequence version replaced NM_120232.1.
FEATURES Location/Qualifiers
source 1..2494
/organism="Arabidopsis thaliana"
/mol_type="mRNA"
/db_xref="taxon:3702"
/chromosome="5"
/ecotype="Columbia"
gene 1..2494
/gene="LECRKA4.1"
/locus_tag="AT5G01540"
/gene_synonym="F7A7.60; F7A7_60; L-type lectin receptor
kinase-VI.2; LecRK-VI.2; lectin receptor kinase a4.1"
/note="Encodes LecRKA4.1, a member of the lectin receptor
kinase subfamily A4 (LecRKA4.1 At5g01540; LecRKA4.2
At5g01550; LecRKA4.3 At5g01560). Together with other
members of the subfamily, functions redundantly in the
negative regulation of ABA response in seed germination.
Positively regulates pattern-triggered immunity."
/db_xref="Araport:AT5G01540"
/db_xref="GeneID:831722"
/db_xref="TAIR:AT5G01540"
CDS 140..2188
/gene="LECRKA4.1"
/locus_tag="AT5G01540"
/gene_synonym="F7A7.60; F7A7_60; L-type lectin receptor
kinase-VI.2; LecRK-VI.2; lectin receptor kinase a4.1"
/inference="Similar to RNA sequence,
EST:INSD:EH802774.1,INSD:EL292499.1,INSD:R64824.1,
INSD:BP816100.2,INSD:AV829852.1,INSD:BP815877.2,
INSD:AV808896.1,INSD:BP592177.1,INSD:BP592187.1,
INSD:BP829512.2,INSD:AU239076.2,INSD:N97302.1,
INSD:BP648184.1,INSD:EH913539.1,INSD:EL144779.1,
INSD:AU036593.1,INSD:EL249303.1,INSD:BP651454.1,
INSD:BP642570.1,INSD:BP645106.1,INSD:EH939393.1,
INSD:EL139251.1,INSD:BP653054.1,INSD:BP831842.1,
INSD:AU230346.1,INSD:BP835046.1,INSD:EL331798.1,
INSD:BP644703.1,INSD:AV827157.1,INSD:AI993877.1,
INSD:AV797394.1"
/inference="similar to RNA sequence,
mRNA:INSD:AF361597.1,INSD:BT000489.1"
/note="lectin receptor kinase a4.1 (LECRKA4.1); FUNCTIONS
IN: kinase activity; INVOLVED IN: N-terminal protein
myristoylation, abscisic acid mediated signaling pathway,
response to abscisic acid stimulus, seed germination;
LOCATED IN: plasma membrane; EXPRESSED IN: 17 plant
structures; EXPRESSED DURING: 10 growth stages; CONTAINS
InterPro DOMAIN/s: Legume lectin, beta chain
(InterPro:IPR001220), Protein kinase, ATP binding site
(InterPro:IPR017441), Serine/threonine-protein kinase-like
domain (InterPro:IPR017442), Concanavalin A-like
lectin/glucanase, subgroup (InterPro:IPR013320), Protein
kinase-like domain (InterPro:IPR011009),
Serine/threonine-protein kinase, active site
(InterPro:IPR008271), Protein kinase, catalytic domain
(InterPro:IPR000719), Concanavalin A-like lectin/glucanase
(InterPro:IPR008985); BEST Arabidopsis thaliana protein
match is: lectin receptor kinase a4.1 (TAIR:AT5G01550.1);
Has 1807 Blast hits to 1807 proteins in 277 species:
Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347;
Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source:
NCBI BLink)."
/codon_start=1
/product="lectin receptor kinase a4.1"
/protein_id="NP_195774.1"
/db_xref="GeneID:831722"
/db_xref="TAIR:AT5G01540"
/db_xref="Araport:AT5G01540"
/translation="MGTQRSMFIVSFLFKLFLFLSVHVRAQRTTTNFAFRGFNGNQSK
IRIEGAAMIKPDGLLRLTDRKSNVTGTAFYHKPVRLLNRNSTNVTIRSFSTSFVFVII
PSSSSNKGFGFTFTLSPTPYRLNAGSAQYLGVFNKENNGDPRNHVFAVEFDTVQGSRD
DNTDRIGNDIGLNYNSRTSDLQEPVVYYNNDDHNKKEDFQLESGNPIQALLEYDGATQ
MLNVTVYPARLGFKPTKPLISQHVPKLLEIVQEEMYVGFTASTGKGQSSAHYVMGWSF
SSGGERPIADVLILSELPPPPPNKAKKEGLNSQVIVMIVALSAVMLVMLVLLFFFVMY
KKRLGQEETLEDWEIDHPRRLRYRDLYVATDGFKKTGIIGTGGFGTVFKGKLPNSDPI
AVKKIIPSSRQGVREFVAEIESLGKLRHKNLVNLQGWCKHKNDLLLIYDYIPNGSLDS
LLYTVPRRSGAVLSWNARFQIAKGIASGLLYLHEEWEKIVIHRDVKPSNVLIDSKMNP
RLGDFGLARLYERGTLSETTALVGTIGYMAPELSRNGNPSSASDVFAFGVLLLEIVCG
RKPTDSGTFFLVDWVMELHANGEILSAIDPRLGSGYDGGEARLALAVGLLCCHQKPAS
RPSMRIVLRYLNGEENVPEIDDEWGYSKSSRSEFGSKLVGYVSSTSITRVSSTSRISQ
"
ORIGIN
1 tggtataatt ttcatcttct ttgactcatt agaatctgaa agaaaaaaaa caaactctca
61 tctcatgtcc ataaaagaaa ttatctaaca aagaactctt caaagtatct ctttatctcc
121 ttctttactt cgctcaccca tgggcacaca aagatccatg ttcatagtct cattcttatt
181 caagcttttc ctgtttttga gcgtccatgt tcgagctcag agaacaacaa caaattttgc
241 tttccgaggt tttaacggaa accaatcgaa gattcggatt gaaggagccg cgatgatcaa
301 acccgacgga ctattgagac tcactgaccg aaagtcgaat gttaccggta cagctttcta
361 ccacaaaccg gtgaggttgc ttaatagaaa ttccacaaac gtcacaattc gttcctttag
421 cacgtctttc gtctttgtca taatcccttc aagctcaagc aataaaggct ttggattcac
481 attcacacta tctccaacac cttatcgtct caatgctgga tccgcacagt acttgggagt
541 tttcaacaaa gagaacaatg gggatcctag gaaccacgta ttcgcagtgg aattcgacac
601 ggtgcaagga tcaagagacg acaacaccga cagaatagga aacgacatcg gtctgaatta
661 caacagtcgt acttcggatc tccaagaacc agtcgtgtat tacaacaatg atgatcacaa
721 caaaaaagaa gatttccagc ttgagagtgg caatcctatt caagcccttt tggagtatga
781 tggagcaaca caaatgctaa acgtcaccgt ttatcccgcg agattagggt ttaaacccac
841 aaagcctttg atctctcaac atgttccaaa actgttggag attgtgcaag aagaaatgta
901 cgtcggattc acggcatcga cggggaaagg tcagtcaagt gctcattacg tgatgggttg
961 gagtttctca agcggcggag aacgtccaat tgcggatgtt ctaatcctct cggagcttcc
1021 tccgccgccg ccgaataagg cgaagaagga aggtttaaat tctcaagtca ttgttatgat
1081 cgtggcgtta tcggcagtaa tgctggtcat gcttgtgtta ctcttcttct tcgtcatgta
1141 caagaagaga ctgggacaag aagagactct tgaagactgg gaaatcgatc atcctcgcag
1201 attgagatac agagacctct acgtagccac ggatggattc aaaaagactg gaatcatcgg
1261 aaccggagga tttggaaccg ttttcaaagg aaaactgccg aattcggatc ccatcgcagt
1321 gaagaagata attccaagta gcaggcaagg tgttcgagaa tttgtcgcag agatcgagag
1381 tttggggaaa ctaaggcata agaatctggt gaacctccaa ggatggtgca aacacaaaaa
1441 cgatctcttg ttgatttacg attacatccc caacggaagc ttagactctc tgctctacac
1501 tgtaccgaga agaagcggcg ccgttttgtc gtggaacgct cgttttcaga tcgctaaagg
1561 aatcgcgtct ggtttattgt atcttcacga agaatgggag aagattgtga ttcatagaga
1621 cgtgaaacct agcaatgtct tgatcgattc aaagatgaac cctagattgg gagattttgg
1681 actcgcgagg ctttacgaac gcggaacgct atcggaaaca acagcactcg ttggaaccat
1741 cgggtacatg gcgccagagc tttcccgcaa cggaaacccc tcatctgcgt ctgatgtttt
1801 cgcgtttggc gttttgttgt tagagatcgt ttgcgggaga aaaccaacgg attccggtac
1861 cttcttcttg gtcgattggg ttatggagct tcacgcgaac ggtgagattc tcagtgcgat
1921 tgatccgaga ctaggatctg gttacgacgg aggagaagca aggcttgctc tcgccgtcgg
1981 attgctctgt tgccaccaaa aaccggcgtc tcggccgtcg atgagaatcg tgcttaggta
2041 tctaaacgga gaggagaatg tacctgagat tgacgatgag tggggatatt caaagtcttc
2101 aagaagcgaa ttcggatcca agttggtagg atatgtttcg tcgacctcaa tcaccagagt
2161 ttcttcgact tctcgtatca gtcagtagtg gataaagcac attcactttt ttgcttcgaa
2221 ttagtcaaat cgtttagctt caaaagacca aaacatgatt taactagtac ttatgattaa
2281 tgaacaatag tataaaataa atttgttgga atgtctatag ctaaaagttt ctgaaatgaa
2341 tgtggcgggg aggtaaaacc ttaatatata attttttcgt gacgtcacac agattagtca
2401 tactatcaaa aaaattaaaa ttagtatttt gtaacgtcac aaagattact catacagtta
2461 tgattttttt atataaaatt actgtatgtt ttgc
//