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Arabidopsis thaliana leucoanthocyanidin dioxygenase (LDOX), mRNA

NCBI Reference Sequence: NM_118417.2

FASTA Graphics 

LOCUS       NM_118417               1260 bp    mRNA    linear   PLN 20-OCT-2022
DEFINITION  Arabidopsis thaliana leucoanthocyanidin dioxygenase (LDOX), mRNA.
ACCESSION   NM_118417
VERSION     NM_118417.2
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (bases 1 to 1260)
  AUTHORS   Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G.,
            Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N.,
            Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M.,
            Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R.,
            Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M.,
            Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M.,
            Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W.,
            Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L.,
            Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J.,
            Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I.,
            Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U.,
            Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van
            Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M.,
            Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M.,
            Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C.,
            Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J.,
            Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S.,
            Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A.,
            Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D.,
            Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de
            Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M.,
            Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S.,
            Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O.,
            Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S.,
            Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F.,
            Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T.,
            Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A.,
            Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D.,
            Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P.,
            Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W.,
            Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M.,
            Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E.,
            Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M.,
            Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G.,
            Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A.,
            Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N.,
            Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M.,
            Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S.,
            Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K.,
            Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C.,
            Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D.,
            Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A.,
            Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N.,
            Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M.,
            Martienssen,R. and McCombie,W.R.
  TITLE     Sequence and analysis of chromosome 4 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 402 (6763), 769-777 (1999)
   PUBMED   10617198
REFERENCE   2  (bases 1 to 1260)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 1260)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (bases 1 to 1260)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            This record is derived from an annotated genomic sequence
            (NC_003075).
            
            On Sep 12, 2016 this sequence version replaced NM_118417.1.
FEATURES             Location/Qualifiers
     source          1..1260
                     /organism="Arabidopsis thaliana"
                     /mol_type="mRNA"
                     /db_xref="taxon:3702"
                     /chromosome="4"
                     /ecotype="Columbia"
     gene            1..1260
                     /gene="LDOX"
                     /locus_tag="AT4G22880"
                     /gene_synonym="ANS; ANTHOCYANIDIN SYNTHASE; F7H19.60;
                     F7H19_60; leucoanthocyanidin dioxygenase;
                     LEUCOANTHOCYANIDIN DIOXYGENASE; TANNIN DEFICIENT SEED 4;
                     TDS4; TT18"
                     /note="encodes leucoanthocyanidin dioxygenase, which is
                     involved in proanthocyanin biosynthesis. Mutant analysis
                     suggests that this gene is also involved in vacuole
                     formation."
                     /db_xref="Araport:AT4G22880"
                     /db_xref="GeneID:828387"
                     /db_xref="TAIR:AT4G22880"
     CDS             50..1120
                     /gene="LDOX"
                     /locus_tag="AT4G22880"
                     /gene_synonym="ANS; ANTHOCYANIDIN SYNTHASE; F7H19.60;
                     F7H19_60; leucoanthocyanidin dioxygenase;
                     LEUCOANTHOCYANIDIN DIOXYGENASE; TANNIN DEFICIENT SEED 4;
                     TDS4; TT18"
                     /inference="Similar to RNA sequence,
                     EST:INSD:EL985346.1,INSD:ES052213.1,INSD:AV784937.1,
                     INSD:BP658005.1,INSD:DR378092.1,INSD:ES166098.1,
                     INSD:ES006696.1,INSD:BP639650.1,INSD:AV788631.1,
                     INSD:AV793172.1,INSD:ES146014.1,INSD:DR250034.1,
                     INSD:ES078645.1,INSD:BP595174.1,INSD:ES431073.1,
                     INSD:DR250035.1,INSD:F13582.1,INSD:ES202354.1,
                     INSD:BP791118.1,INSD:ES166612.1,INSD:BP572052.1,
                     INSD:ES002493.1,INSD:EL309265.1,INSD:AV823866.1,
                     INSD:BP654818.1"
                     /inference="Similar to RNA sequence,
                     mRNA:INSD:AY088203.1,INSD:AK226417.1"
                     /note="leucoanthocyanidin dioxygenase (LDOX); CONTAINS
                     InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase
                     (InterPro:IPR005123); BEST Arabidopsis thaliana protein
                     match is: flavonol synthase 1 (TAIR:AT5G08640.2); Has 8356
                     Blast hits to 8311 proteins in 977 species: Archae - 0;
                     Bacteria - 1058; Metazoa - 85; Fungi - 889; Plants - 4934;
                     Viruses - 0; Other Eukaryotes - 1390 (source: NCBI
                     BLink)."
                     /codon_start=1
                     /product="leucoanthocyanidin dioxygenase"
                     /protein_id="NP_194019.1"
                     /db_xref="GeneID:828387"
                     /db_xref="TAIR:AT4G22880"
                     /db_xref="Araport:AT4G22880"
                     /translation="MVAVERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDG
                     PQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEF
                     FSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPK
                     TPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYP
                     KCPQPELALGVEAHTDVSALTFILHNMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLE
                     ILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTF
                     AQHIEHKLFGKEQEELVSEKND"
ORIGIN      
        1 acttgcaacc aattacaaaa aagagtcttt aaacagaaga ctaaagaaga tggttgcggt
       61 tgaaagagtt gagagtctag caaaaagcgg aatcatatcg attccaaaag aatatattcg
      121 tccaaaagaa gagctcgaga gcatcaacga tgttttccta gaagagaaga aagaagacgg
      181 tcctcaagtt cccacaatcg atctaaagaa catcgagtca gacgatgaaa agatccgtga
      241 gaattgtatt gaggagctga aaaaggcatc tttggattgg ggagtgatgc atttgatcaa
      301 ccatggaata ccagctgatc taatggagcg tgtcaagaaa gccggagaag agtttttcag
      361 tttgtctgtg gaagagaagg agaagtatgc aaacgatcaa gccactggaa agattcaagg
      421 ctatggaagt aaattggcta acaacgcgag tggacaattg gaatgggaag attacttctt
      481 tcatcttgcg tatcctgaag agaagagaga tctatcaatt tggcctaaga caccaagtga
      541 ttacatagaa gcaacgagtg agtacgcgaa gtgtcttcgt ttgctagcga ctaaagtctt
      601 caaggctctc tctgtcggtc taggtttaga gcctgaccgt ctagagaaag aagttggtgg
      661 tttagaagag cttcttctac aaatgaagat aaattactat ccaaaatgtc ctcagcctga
      721 gctagcactc ggtgtggaag ctcacaccga tgtaagcgct ttaactttca ttctacacaa
      781 catggttccg ggtttgcagc ttttctacga gggcaaatgg gtcactgcaa aatgtgttcc
      841 tgattcgatt gtgatgcaca ttggggatac tttggagatt cttagtaatg ggaagtataa
      901 gagtatactt catcgtgggt tggtgaataa ggagaaggtt aggatttctt gggctgtgtt
      961 ttgtgaaccc ccaaaggata agattgttct taagccgttg ccggagatgg tgagtgttga
     1021 gtctccggct aagtttcctc cacggacttt tgctcaacat attgagcata agttgtttgg
     1081 gaaggaacaa gaggaattgg tatccgagaa aaatgattaa gtttctgtgt ttactcttat
     1141 ttttgaaact ctatgtgcga gtttctttta taatgtgttt gtgtctttct catgaatttg
     1201 atgtgtttgt gccttttata gtgaatattg cggagcttaa caagcaaact ttaatttaaa
//
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