LOCUS NM_118417 1260 bp mRNA linear PLN 20-OCT-2022
DEFINITION Arabidopsis thaliana leucoanthocyanidin dioxygenase (LDOX), mRNA.
ACCESSION NM_118417
VERSION NM_118417.2
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 1260)
AUTHORS Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G.,
Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N.,
Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M.,
Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R.,
Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M.,
Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M.,
Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W.,
Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L.,
Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J.,
Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I.,
Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U.,
Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van
Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M.,
Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M.,
Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C.,
Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J.,
Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S.,
Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A.,
Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D.,
Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de
Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M.,
Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S.,
Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O.,
Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S.,
Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F.,
Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T.,
Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A.,
Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D.,
Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P.,
Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W.,
Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M.,
Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E.,
Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M.,
Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G.,
Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A.,
Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N.,
Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M.,
Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S.,
Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K.,
Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C.,
Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D.,
Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A.,
Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N.,
Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M.,
Martienssen,R. and McCombie,W.R.
TITLE Sequence and analysis of chromosome 4 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 769-777 (1999)
PUBMED 10617198
REFERENCE 2 (bases 1 to 1260)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 1260)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (bases 1 to 1260)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
This record is derived from an annotated genomic sequence
(NC_003075).
On Sep 12, 2016 this sequence version replaced NM_118417.1.
FEATURES Location/Qualifiers
source 1..1260
/organism="Arabidopsis thaliana"
/mol_type="mRNA"
/db_xref="taxon:3702"
/chromosome="4"
/ecotype="Columbia"
gene 1..1260
/gene="LDOX"
/locus_tag="AT4G22880"
/gene_synonym="ANS; ANTHOCYANIDIN SYNTHASE; F7H19.60;
F7H19_60; leucoanthocyanidin dioxygenase;
LEUCOANTHOCYANIDIN DIOXYGENASE; TANNIN DEFICIENT SEED 4;
TDS4; TT18"
/note="encodes leucoanthocyanidin dioxygenase, which is
involved in proanthocyanin biosynthesis. Mutant analysis
suggests that this gene is also involved in vacuole
formation."
/db_xref="Araport:AT4G22880"
/db_xref="GeneID:828387"
/db_xref="TAIR:AT4G22880"
CDS 50..1120
/gene="LDOX"
/locus_tag="AT4G22880"
/gene_synonym="ANS; ANTHOCYANIDIN SYNTHASE; F7H19.60;
F7H19_60; leucoanthocyanidin dioxygenase;
LEUCOANTHOCYANIDIN DIOXYGENASE; TANNIN DEFICIENT SEED 4;
TDS4; TT18"
/inference="Similar to RNA sequence,
EST:INSD:EL985346.1,INSD:ES052213.1,INSD:AV784937.1,
INSD:BP658005.1,INSD:DR378092.1,INSD:ES166098.1,
INSD:ES006696.1,INSD:BP639650.1,INSD:AV788631.1,
INSD:AV793172.1,INSD:ES146014.1,INSD:DR250034.1,
INSD:ES078645.1,INSD:BP595174.1,INSD:ES431073.1,
INSD:DR250035.1,INSD:F13582.1,INSD:ES202354.1,
INSD:BP791118.1,INSD:ES166612.1,INSD:BP572052.1,
INSD:ES002493.1,INSD:EL309265.1,INSD:AV823866.1,
INSD:BP654818.1"
/inference="Similar to RNA sequence,
mRNA:INSD:AY088203.1,INSD:AK226417.1"
/note="leucoanthocyanidin dioxygenase (LDOX); CONTAINS
InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase
(InterPro:IPR005123); BEST Arabidopsis thaliana protein
match is: flavonol synthase 1 (TAIR:AT5G08640.2); Has 8356
Blast hits to 8311 proteins in 977 species: Archae - 0;
Bacteria - 1058; Metazoa - 85; Fungi - 889; Plants - 4934;
Viruses - 0; Other Eukaryotes - 1390 (source: NCBI
BLink)."
/codon_start=1
/product="leucoanthocyanidin dioxygenase"
/protein_id="NP_194019.1"
/db_xref="GeneID:828387"
/db_xref="TAIR:AT4G22880"
/db_xref="Araport:AT4G22880"
/translation="MVAVERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDG
PQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEF
FSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPK
TPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYP
KCPQPELALGVEAHTDVSALTFILHNMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLE
ILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTF
AQHIEHKLFGKEQEELVSEKND"
ORIGIN
1 acttgcaacc aattacaaaa aagagtcttt aaacagaaga ctaaagaaga tggttgcggt
61 tgaaagagtt gagagtctag caaaaagcgg aatcatatcg attccaaaag aatatattcg
121 tccaaaagaa gagctcgaga gcatcaacga tgttttccta gaagagaaga aagaagacgg
181 tcctcaagtt cccacaatcg atctaaagaa catcgagtca gacgatgaaa agatccgtga
241 gaattgtatt gaggagctga aaaaggcatc tttggattgg ggagtgatgc atttgatcaa
301 ccatggaata ccagctgatc taatggagcg tgtcaagaaa gccggagaag agtttttcag
361 tttgtctgtg gaagagaagg agaagtatgc aaacgatcaa gccactggaa agattcaagg
421 ctatggaagt aaattggcta acaacgcgag tggacaattg gaatgggaag attacttctt
481 tcatcttgcg tatcctgaag agaagagaga tctatcaatt tggcctaaga caccaagtga
541 ttacatagaa gcaacgagtg agtacgcgaa gtgtcttcgt ttgctagcga ctaaagtctt
601 caaggctctc tctgtcggtc taggtttaga gcctgaccgt ctagagaaag aagttggtgg
661 tttagaagag cttcttctac aaatgaagat aaattactat ccaaaatgtc ctcagcctga
721 gctagcactc ggtgtggaag ctcacaccga tgtaagcgct ttaactttca ttctacacaa
781 catggttccg ggtttgcagc ttttctacga gggcaaatgg gtcactgcaa aatgtgttcc
841 tgattcgatt gtgatgcaca ttggggatac tttggagatt cttagtaatg ggaagtataa
901 gagtatactt catcgtgggt tggtgaataa ggagaaggtt aggatttctt gggctgtgtt
961 ttgtgaaccc ccaaaggata agattgttct taagccgttg ccggagatgg tgagtgttga
1021 gtctccggct aagtttcctc cacggacttt tgctcaacat attgagcata agttgtttgg
1081 gaaggaacaa gaggaattgg tatccgagaa aaatgattaa gtttctgtgt ttactcttat
1141 ttttgaaact ctatgtgcga gtttctttta taatgtgttt gtgtctttct catgaatttg
1201 atgtgtttgt gccttttata gtgaatattg cggagcttaa caagcaaact ttaatttaaa
//