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Arabidopsis thaliana Pentatricopeptide repeat (PPR-like) superfamily protein (AT4G11690), partial mRNA

NCBI Reference Sequence: NM_117238.2

FASTA Graphics 

LOCUS       NM_117238               1746 bp    mRNA    linear   PLN 20-OCT-2022
DEFINITION  Arabidopsis thaliana Pentatricopeptide repeat (PPR-like)
            superfamily protein (AT4G11690), partial mRNA.
ACCESSION   NM_117238
VERSION     NM_117238.2
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (bases 1 to 1746)
  AUTHORS   Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G.,
            Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N.,
            Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M.,
            Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R.,
            Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M.,
            Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M.,
            Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W.,
            Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L.,
            Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J.,
            Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I.,
            Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U.,
            Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van
            Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M.,
            Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M.,
            Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C.,
            Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J.,
            Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S.,
            Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A.,
            Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D.,
            Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de
            Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M.,
            Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S.,
            Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O.,
            Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S.,
            Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F.,
            Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T.,
            Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A.,
            Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D.,
            Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P.,
            Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W.,
            Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M.,
            Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E.,
            Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M.,
            Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G.,
            Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A.,
            Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N.,
            Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M.,
            Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S.,
            Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K.,
            Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C.,
            Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D.,
            Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A.,
            Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N.,
            Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M.,
            Martienssen,R. and McCombie,W.R.
  TITLE     Sequence and analysis of chromosome 4 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 402 (6763), 769-777 (1999)
   PUBMED   10617198
REFERENCE   2  (bases 1 to 1746)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 1746)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (bases 1 to 1746)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            This record is derived from an annotated genomic sequence
            (NC_003075).
            
            On Sep 12, 2016 this sequence version replaced NM_117238.1.
            COMPLETENESS: incomplete on the 5' end.
FEATURES             Location/Qualifiers
     source          1..1746
                     /organism="Arabidopsis thaliana"
                     /mol_type="mRNA"
                     /db_xref="taxon:3702"
                     /chromosome="4"
                     /ecotype="Columbia"
     gene            <1..1746
                     /locus_tag="AT4G11690"
                     /gene_synonym="T5C23.120; T5C23_120"
                     /db_xref="Araport:AT4G11690"
                     /db_xref="GeneID:826774"
                     /db_xref="TAIR:AT4G11690"
     CDS             1..1701
                     /locus_tag="AT4G11690"
                     /gene_synonym="T5C23.120; T5C23_120"
                     /inference="Similar to RNA sequence, mRNA:INSD:DQ446820.1"
                     /note="Pentatricopeptide repeat (PPR-like) superfamily
                     protein; INVOLVED IN: biological_process unknown; LOCATED
                     IN: endomembrane system; EXPRESSED IN: sperm cell;
                     CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat
                     (InterPro:IPR002885); BEST Arabidopsis thaliana protein
                     match is: Tetratricopeptide repeat (TPR)-like superfamily
                     protein (TAIR:AT5G39710.1); Has 58414 Blast hits to 14966
                     proteins in 309 species: Archae - 5; Bacteria - 45;
                     Metazoa - 1145; Fungi - 1103; Plants - 53991; Viruses - 0;
                     Other Eukaryotes - 2125 (source: NCBI BLink)."
                     /codon_start=1
                     /product="Pentatricopeptide repeat (PPR-like) superfamily
                     protein"
                     /protein_id="NP_192906.1"
                     /db_xref="GeneID:826774"
                     /db_xref="TAIR:AT4G11690"
                     /db_xref="Araport:AT4G11690"
                     /translation="MAAKSQKTLVLLANLIKFPPLKAFSLLNSPNFHEFQHTHESISI
                     LLRLLLSGNLFSHAQSLLLQVISGKIHSQFFTSSSLLHYLTESETSKTKFRLYEVIIN
                     SYVQSQSLNLSISYFNEMVDNGFVPGSNCFNYLLTFVVGSSSFNQWWSFFNENKSKVV
                     LDVYSFGILIKGCCEAGEIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAK
                     DLFFEMGKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMN
                     QLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGI
                     NPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGA
                     AKMVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLI
                     HGFCIKGQMNEASRLFKSMVEKNCEPNEVIYNTMILGYCKEGSSYRALKLLKEMEEKE
                     LAPNVASYRYMIEVLCKERKSKEAERLVEKMIDSGIDPSTSILSLISRAKNDSHVSSK
                     "
ORIGIN      
        1 atggcggcaa aatcccagaa aaccctcgtt ctgctagcga atttaatcaa gtttcctcca
       61 ttaaaagctt tttctctctt aaattctcca aatttccatg aatttcaaca cacacacgaa
      121 tcaatctcaa tccttcttcg tctccttctc tctgggaact tattctctca cgctcaatca
      181 cttcttctac aagtaatctc cggaaaaatc cactcccaat tcttcacatc ttcctctctg
      241 ttacactatt tgacagaatc agaaacgtca aaaacaaagt ttcgtctcta cgaggtaatc
      301 atcaattcct atgttcaatc tcaatcccta aacttatcaa tctcttactt caacgaaatg
      361 gtcgataatg gttttgttcc tggatcgaat tgcttcaact atctcttaac tttcgttgtt
      421 gggtcatctt ctttcaatca atggtggagt ttcttcaacg agaacaaaag caaagttgtt
      481 ttggacgtgt atagctttgg gattctgatc aaaggttgtt gtgaagctgg tgagattgag
      541 aaaagctttg atcttcttat tgaattgaca gagtttgggt tttctccaaa tgtagttatc
      601 tacactactt tgattgatgg gtgttgcaag aaaggtgaga ttgagaaggc taaagatttg
      661 ttttttgaga tggggaaact tggattagtg gctaatgagc gtacttacac ggttttgatt
      721 aatgggttat tcaaaaacgg ggttaagaaa caagggtttg agatgtatga gaagatgcag
      781 gaagatggag ttttccctaa tctctatact tataactgtg tgatgaatca gctttgtaaa
      841 gatggaagaa caaaagatgc attccaagtg ttcgacgaaa tgcgtgagag aggggtttct
      901 tgtaacattg tcacttataa tactttgatt ggtgggttat gtagagagat gaagttgaat
      961 gaggcaaata aagttgtgga tcaaatgaag agtgatggaa tcaacccgaa tctgattacg
     1021 tataacactt tgattgatgg gttttgtggt gtgggaaaat tagggaaggc gttgagttta
     1081 tgcagagatt tgaagtcaag aggtctgtct ccgtccctcg tcacgtataa tatcctagtt
     1141 tccgggttct gtagaaaagg agatacttca ggagcagcta agatggttaa ggagatggaa
     1201 gagagaggga ttaaaccgtc gaaagtaaca tacacgatac ttatcgacac atttgctcgt
     1261 tcggataaca tggagaaagc aattcagctt cgactatcaa tggaggaact aggattagtc
     1321 ccggatgttc atacctatag tgtattgatt catgggtttt gcatcaaagg tcaaatgaat
     1381 gaagcatcta ggctttttaa gtcgatggtc gaaaagaatt gtgaaccgaa cgaggttata
     1441 tacaatacga tgattcttgg ttattgtaag gaaggtagtt cttatagagc attgaagttg
     1501 cttaaggaga tggaagagaa agagttggct ccaaatgttg ctagctacag atatatgatt
     1561 gaagttcttt gtaaagaaag aaaatcgaaa gaagctgagc gtttagttga gaagatgatt
     1621 gattcaggga ttgatccatc tacttcaatc cttagtttga tctctagagc caaaaacgat
     1681 tcacatgtaa gctcaaaata atgattagag cagttttaat ctgagataaa ttaccgataa
     1741 tgcaac
//
Feature
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Reference sequence information

  • RefSeq alternative splicing
    See the other reference mRNA sequence splice variant for the AT4G11690 gene (NM_001340731.1).
  • RefSeq protein product
    See the reference protein sequence for Pentatricopeptide repeat (PPR-like) superfamily protein (NP_192906.1).

More about the AT4G11690 gene

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