LOCUS NM_117238 1746 bp mRNA linear PLN 20-OCT-2022
DEFINITION Arabidopsis thaliana Pentatricopeptide repeat (PPR-like)
superfamily protein (AT4G11690), partial mRNA.
ACCESSION NM_117238
VERSION NM_117238.2
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 1746)
AUTHORS Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G.,
Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N.,
Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M.,
Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R.,
Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M.,
Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M.,
Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W.,
Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L.,
Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J.,
Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I.,
Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U.,
Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van
Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M.,
Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M.,
Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C.,
Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J.,
Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S.,
Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A.,
Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D.,
Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de
Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M.,
Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S.,
Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O.,
Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S.,
Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F.,
Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T.,
Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A.,
Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D.,
Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P.,
Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W.,
Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M.,
Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E.,
Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M.,
Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G.,
Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A.,
Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N.,
Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M.,
Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S.,
Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K.,
Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C.,
Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D.,
Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A.,
Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N.,
Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M.,
Martienssen,R. and McCombie,W.R.
TITLE Sequence and analysis of chromosome 4 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 769-777 (1999)
PUBMED 10617198
REFERENCE 2 (bases 1 to 1746)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 1746)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (bases 1 to 1746)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
This record is derived from an annotated genomic sequence
(NC_003075).
On Sep 12, 2016 this sequence version replaced NM_117238.1.
COMPLETENESS: incomplete on the 5' end.
FEATURES Location/Qualifiers
source 1..1746
/organism="Arabidopsis thaliana"
/mol_type="mRNA"
/db_xref="taxon:3702"
/chromosome="4"
/ecotype="Columbia"
gene <1..1746
/locus_tag="AT4G11690"
/gene_synonym="T5C23.120; T5C23_120"
/db_xref="Araport:AT4G11690"
/db_xref="GeneID:826774"
/db_xref="TAIR:AT4G11690"
CDS 1..1701
/locus_tag="AT4G11690"
/gene_synonym="T5C23.120; T5C23_120"
/inference="Similar to RNA sequence, mRNA:INSD:DQ446820.1"
/note="Pentatricopeptide repeat (PPR-like) superfamily
protein; INVOLVED IN: biological_process unknown; LOCATED
IN: endomembrane system; EXPRESSED IN: sperm cell;
CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat
(InterPro:IPR002885); BEST Arabidopsis thaliana protein
match is: Tetratricopeptide repeat (TPR)-like superfamily
protein (TAIR:AT5G39710.1); Has 58414 Blast hits to 14966
proteins in 309 species: Archae - 5; Bacteria - 45;
Metazoa - 1145; Fungi - 1103; Plants - 53991; Viruses - 0;
Other Eukaryotes - 2125 (source: NCBI BLink)."
/codon_start=1
/product="Pentatricopeptide repeat (PPR-like) superfamily
protein"
/protein_id="NP_192906.1"
/db_xref="GeneID:826774"
/db_xref="TAIR:AT4G11690"
/db_xref="Araport:AT4G11690"
/translation="MAAKSQKTLVLLANLIKFPPLKAFSLLNSPNFHEFQHTHESISI
LLRLLLSGNLFSHAQSLLLQVISGKIHSQFFTSSSLLHYLTESETSKTKFRLYEVIIN
SYVQSQSLNLSISYFNEMVDNGFVPGSNCFNYLLTFVVGSSSFNQWWSFFNENKSKVV
LDVYSFGILIKGCCEAGEIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAK
DLFFEMGKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMN
QLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGI
NPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGA
AKMVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLI
HGFCIKGQMNEASRLFKSMVEKNCEPNEVIYNTMILGYCKEGSSYRALKLLKEMEEKE
LAPNVASYRYMIEVLCKERKSKEAERLVEKMIDSGIDPSTSILSLISRAKNDSHVSSK
"
ORIGIN
1 atggcggcaa aatcccagaa aaccctcgtt ctgctagcga atttaatcaa gtttcctcca
61 ttaaaagctt tttctctctt aaattctcca aatttccatg aatttcaaca cacacacgaa
121 tcaatctcaa tccttcttcg tctccttctc tctgggaact tattctctca cgctcaatca
181 cttcttctac aagtaatctc cggaaaaatc cactcccaat tcttcacatc ttcctctctg
241 ttacactatt tgacagaatc agaaacgtca aaaacaaagt ttcgtctcta cgaggtaatc
301 atcaattcct atgttcaatc tcaatcccta aacttatcaa tctcttactt caacgaaatg
361 gtcgataatg gttttgttcc tggatcgaat tgcttcaact atctcttaac tttcgttgtt
421 gggtcatctt ctttcaatca atggtggagt ttcttcaacg agaacaaaag caaagttgtt
481 ttggacgtgt atagctttgg gattctgatc aaaggttgtt gtgaagctgg tgagattgag
541 aaaagctttg atcttcttat tgaattgaca gagtttgggt tttctccaaa tgtagttatc
601 tacactactt tgattgatgg gtgttgcaag aaaggtgaga ttgagaaggc taaagatttg
661 ttttttgaga tggggaaact tggattagtg gctaatgagc gtacttacac ggttttgatt
721 aatgggttat tcaaaaacgg ggttaagaaa caagggtttg agatgtatga gaagatgcag
781 gaagatggag ttttccctaa tctctatact tataactgtg tgatgaatca gctttgtaaa
841 gatggaagaa caaaagatgc attccaagtg ttcgacgaaa tgcgtgagag aggggtttct
901 tgtaacattg tcacttataa tactttgatt ggtgggttat gtagagagat gaagttgaat
961 gaggcaaata aagttgtgga tcaaatgaag agtgatggaa tcaacccgaa tctgattacg
1021 tataacactt tgattgatgg gttttgtggt gtgggaaaat tagggaaggc gttgagttta
1081 tgcagagatt tgaagtcaag aggtctgtct ccgtccctcg tcacgtataa tatcctagtt
1141 tccgggttct gtagaaaagg agatacttca ggagcagcta agatggttaa ggagatggaa
1201 gagagaggga ttaaaccgtc gaaagtaaca tacacgatac ttatcgacac atttgctcgt
1261 tcggataaca tggagaaagc aattcagctt cgactatcaa tggaggaact aggattagtc
1321 ccggatgttc atacctatag tgtattgatt catgggtttt gcatcaaagg tcaaatgaat
1381 gaagcatcta ggctttttaa gtcgatggtc gaaaagaatt gtgaaccgaa cgaggttata
1441 tacaatacga tgattcttgg ttattgtaag gaaggtagtt cttatagagc attgaagttg
1501 cttaaggaga tggaagagaa agagttggct ccaaatgttg ctagctacag atatatgatt
1561 gaagttcttt gtaaagaaag aaaatcgaaa gaagctgagc gtttagttga gaagatgatt
1621 gattcaggga ttgatccatc tacttcaatc cttagtttga tctctagagc caaaaacgat
1681 tcacatgtaa gctcaaaata atgattagag cagttttaat ctgagataaa ttaccgataa
1741 tgcaac
//