LOCUS NM_104826 881 bp mRNA linear PLN 20-OCT-2022
DEFINITION Arabidopsis thaliana CAP-gly domain linker (AT1G61450), mRNA.
ACCESSION NM_104826
VERSION NM_104826.3
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 881)
AUTHORS Theologis,A., Ecker,J.R., Palm,C.J., Federspiel,N.A., Kaul,S.,
White,O., Alonso,J., Altafi,H., Araujo,R., Bowman,C.L.,
Brooks,S.Y., Buehler,E., Chan,A., Chao,Q., Chen,H., Cheuk,R.F.,
Chin,C.W., Chung,M.K., Conn,L., Conway,A.B., Conway,A.R.,
Creasy,T.H., Dewar,K., Dunn,P., Etgu,P., Feldblyum,T.V., Feng,J.,
Fong,B., Fujii,C.Y., Gill,J.E., Goldsmith,A.D., Haas,B.,
Hansen,N.F., Hughes,B., Huizar,L., Hunter,J.L., Jenkins,J.,
Johnson-Hopson,C., Khan,S., Khaykin,E., Kim,C.J., Koo,H.L.,
Kremenetskaia,I., Kurtz,D.B., Kwan,A., Lam,B., Langin-Hooper,S.,
Lee,A., Lee,J.M., Lenz,C.A., Li,J.H., Li,Y., Lin,X., Liu,S.X.,
Liu,Z.A., Luros,J.S., Maiti,R., Marziali,A., Militscher,J.,
Miranda,M., Nguyen,M., Nierman,W.C., Osborne,B.I., Pai,G.,
Peterson,J., Pham,P.K., Rizzo,M., Rooney,T., Rowley,D., Sakano,H.,
Salzberg,S.L., Schwartz,J.R., Shinn,P., Southwick,A.M., Sun,H.,
Tallon,L.J., Tambunga,G., Toriumi,M.J., Town,C.D., Utterback,T.,
Van Aken,S., Vaysberg,M., Vysotskaia,V.S., Walker,M., Wu,D., Yu,G.,
Fraser,C.M., Venter,J.C. and Davis,R.W.
TITLE Sequence and analysis of chromosome 1 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 816-820 (2000)
PUBMED 11130712
REFERENCE 2 (bases 1 to 881)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 881)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (18-JUL-2017) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (bases 1 to 881)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 5 (bases 1 to 881)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
This record is derived from an annotated genomic sequence
(NC_003070).
On Sep 12, 2016 this sequence version replaced NM_104826.2.
FEATURES Location/Qualifiers
source 1..881
/organism="Arabidopsis thaliana"
/mol_type="mRNA"
/db_xref="taxon:3702"
/chromosome="1"
/ecotype="Columbia"
gene 1..881
/locus_tag="AT1G61450"
/gene_synonym="T1F9.6; T1F9_6"
/db_xref="Araport:AT1G61450"
/db_xref="GeneID:842439"
/db_xref="TAIR:AT1G61450"
CDS 331..693
/locus_tag="AT1G61450"
/gene_synonym="T1F9.6; T1F9_6"
/inference="Similar to RNA sequence,
EST:INSD:EG449750.1,INSD:EG449739.1,INSD:EL153404.1,
INSD:EG449737.1,INSD:EG449528.1,INSD:EG449651.1,
INSD:EG449525.1,INSD:EG511231.1,INSD:EG449657.1,
INSD:EG449752.1,INSD:EG449660.1,INSD:EG449534.1,
INSD:EG515376.1,INSD:EG449508.1,INSD:EG515373.1,
INSD:EG449658.1,INSD:EG449655.1,INSD:EG449500.1,
INSD:EG449654.1"
/note="unknown protein; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT1G61415.1); Has 30201
Blast hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink)."
/codon_start=1
/product="CAP-gly domain linker"
/protein_id="NP_176340.2"
/db_xref="Araport:AT1G61450"
/db_xref="GeneID:842439"
/db_xref="TAIR:AT1G61450"
/translation="MEDSGAILCQISIFKDMLDQVNREIEANIQVTREIESQIGACSE
IESSLSLKEPELTRSFLASQFEISGLISVTADSRNSLKLLEDEICCLRSEHSELITKT
NREAGRVCEDVFWIPKRD"
ORIGIN
1 caacagtcaa cattggtgtg ccagtgtcac cagagagaag aagacgatca tcaattctac
61 catttcgaac gcacatattg aaagattaca aacccaactc gaatctgaac cgaaccaaac
121 tagatccgaa ataaattaaa aagtcggttc gtatttacaa atattgaaag atccgaaatc
181 cgattgggcc gattttggta aacgcccata aaggcccggt aaaatcttat cttcccctaa
241 ctcataacga tattgatttt gaattttgaa aagaagcgga agcaagagcg agcgagagag
301 agagagagac agagagtgat ttctgcggag atggaggatt caggagcgat tctatgtcag
361 atctccattt tcaaggacat gcttgatcag gtcaatcggg aaatcgaagc aaacattcag
421 gtgacgcgag agatcgaatc acagatcgga gcgtgttctg agattgaatc ttctctgtct
481 ctcaaggaac ctgagcttac tagatcgttc cttgcttctc aattcgagat cagcggtttg
541 atctccgtta cagctgattc aagaaactct ctgaagctat tggaggatga gatttgttgc
601 ttaagaagtg agcacagtga gctaattaca aagactaacc gagaagcggg aagggtttgt
661 gaagatgtgt tttggattcc aaagagagat tgaagacagt gaattcagga gtttattggc
721 tgagaaggag cgtctggaaa acgaagttcg gatgttggaa gagaagaaca tggatgtgaa
781 gaactctatt ttggcttaca tggaagatga aatgatgaat ctattatctg attagtgttt
841 ctggaaatat gaaactttta gccattggct tcgaatctaa g
//