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Arabidopsis thaliana beta-galactosidase 5 (BGAL5), mRNA

NCBI Reference Sequence: NM_103587.3

FASTA Graphics 

LOCUS       NM_103587               2694 bp    mRNA    linear   PLN 20-OCT-2022
DEFINITION  Arabidopsis thaliana beta-galactosidase 5 (BGAL5), mRNA.
ACCESSION   NM_103587
VERSION     NM_103587.3
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (bases 1 to 2694)
  AUTHORS   Theologis,A., Ecker,J.R., Palm,C.J., Federspiel,N.A., Kaul,S.,
            White,O., Alonso,J., Altafi,H., Araujo,R., Bowman,C.L.,
            Brooks,S.Y., Buehler,E., Chan,A., Chao,Q., Chen,H., Cheuk,R.F.,
            Chin,C.W., Chung,M.K., Conn,L., Conway,A.B., Conway,A.R.,
            Creasy,T.H., Dewar,K., Dunn,P., Etgu,P., Feldblyum,T.V., Feng,J.,
            Fong,B., Fujii,C.Y., Gill,J.E., Goldsmith,A.D., Haas,B.,
            Hansen,N.F., Hughes,B., Huizar,L., Hunter,J.L., Jenkins,J.,
            Johnson-Hopson,C., Khan,S., Khaykin,E., Kim,C.J., Koo,H.L.,
            Kremenetskaia,I., Kurtz,D.B., Kwan,A., Lam,B., Langin-Hooper,S.,
            Lee,A., Lee,J.M., Lenz,C.A., Li,J.H., Li,Y., Lin,X., Liu,S.X.,
            Liu,Z.A., Luros,J.S., Maiti,R., Marziali,A., Militscher,J.,
            Miranda,M., Nguyen,M., Nierman,W.C., Osborne,B.I., Pai,G.,
            Peterson,J., Pham,P.K., Rizzo,M., Rooney,T., Rowley,D., Sakano,H.,
            Salzberg,S.L., Schwartz,J.R., Shinn,P., Southwick,A.M., Sun,H.,
            Tallon,L.J., Tambunga,G., Toriumi,M.J., Town,C.D., Utterback,T.,
            Van Aken,S., Vaysberg,M., Vysotskaia,V.S., Walker,M., Wu,D., Yu,G.,
            Fraser,C.M., Venter,J.C. and Davis,R.W.
  TITLE     Sequence and analysis of chromosome 1 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 408 (6814), 816-820 (2000)
   PUBMED   11130712
REFERENCE   2  (bases 1 to 2694)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 2694)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-JUL-2017) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (bases 1 to 2694)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   5  (bases 1 to 2694)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            This record is derived from an annotated genomic sequence
            (NC_003070).
            
            On Sep 12, 2016 this sequence version replaced NM_103587.2.
FEATURES             Location/Qualifiers
     source          1..2694
                     /organism="Arabidopsis thaliana"
                     /mol_type="mRNA"
                     /db_xref="taxon:3702"
                     /chromosome="1"
                     /ecotype="Columbia"
     gene            1..2694
                     /gene="BGAL5"
                     /locus_tag="AT1G45130"
                     /gene_synonym="AtBGAL5; beta-galactosidase 5; F27F5.20;
                     F27F5_20"
                     /db_xref="Araport:AT1G45130"
                     /db_xref="GeneID:841080"
                     /db_xref="TAIR:AT1G45130"
     CDS             337..2535
                     /gene="BGAL5"
                     /locus_tag="AT1G45130"
                     /gene_synonym="AtBGAL5; beta-galactosidase 5; F27F5.20;
                     F27F5_20"
                     /inference="Similar to RNA sequence,
                     EST:INSD:BP850164.1,INSD:BP607874.1,INSD:AV565146.1,
                     INSD:BP647649.1,INSD:AI994624.1,INSD:AV555896.1,
                     INSD:AV828682.1,INSD:BP799581.1,INSD:BP655057.1,
                     INSD:AV558229.1,INSD:BE528511.1,INSD:EH912843.1,
                     INSD:DR233759.1,INSD:ES102769.1,INSD:EG505771.1,
                     INSD:N96096.1,INSD:EG421291.1,INSD:EH800407.1,
                     INSD:BP803171.1,INSD:ES132696.1,INSD:EL190584.1,
                     INSD:AV830502.1,INSD:BP803036.1,INSD:EL979679.1,
                     INSD:AI100297.1,INSD:EL067723.1,INSD:EL984818.1,
                     INSD:BP599945.1,INSD:AV811953.1,INSD:ES042408.1,
                     INSD:BP831767.1,INSD:BP609957.1,INSD:ES192045.1,
                     INSD:ES073329.1,INSD:ES073101.1,INSD:AI994625.1,
                     INSD:BP656511.1,INSD:BP656326.1,INSD:BP810790.1,
                     INSD:BP848311.1,INSD:ES160359.1,INSD:AV565415.1,
                     INSD:EL071554.1,INSD:ES127677.1,INSD:BP595745.1,
                     INSD:BP608433.1,INSD:EL105731.1,INSD:CF652861.1,
                     INSD:BP668067.1,INSD:DR354461.1,INSD:AV806862.1,
                     INSD:ES192578.1,INSD:AV549694.1,INSD:BP603106.1,
                     INSD:ES190103.1,INSD:ES156679.1,INSD:ES195340.1,
                     INSD:BP835778.1,INSD:BP656331.1"
                     /inference="similar to RNA sequence,
                     mRNA:INSD:AY093977.1,INSD:AY058098.1,INSD:AJ270301.1,
                     INSD:BX817895.1,INSD:AY069911.1"
                     /note="beta-galactosidase 5 (BGAL5); FUNCTIONS IN: cation
                     binding, beta-galactosidase activity, hydrolase activity,
                     hydrolyzing O-glycosyl compounds, catalytic activity;
                     INVOLVED IN: lactose catabolic process, using glucoside
                     3-dehydrogenase, carbohydrate metabolic process, lactose
                     catabolic process via UDP-galactose, lactose catabolic
                     process; LOCATED IN: endomembrane system; EXPRESSED IN: 24
                     plant structures; EXPRESSED DURING: 13 growth stages;
                     CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family
                     35, conserved site (InterPro:IPR019801), Glycoside
                     hydrolase family 2, carbohydrate-binding
                     (InterPro:IPR006104), Glycoside hydrolase, family 35
                     (InterPro:IPR001944), Glycoside hydrolase, catalytic core
                     (InterPro:IPR017853), Glycoside hydrolase, subgroup,
                     catalytic core (InterPro:IPR013781), Galactose-binding
                     domain-like (InterPro:IPR008979); BEST Arabidopsis
                     thaliana protein match is: beta-galactosidase 3
                     (TAIR:AT4G36360.1); Has 2206 Blast hits to 2062 proteins
                     in 469 species: Archae - 15; Bacteria - 946; Metazoa -
                     364; Fungi - 218; Plants - 593; Viruses - 0; Other
                     Eukaryotes - 70 (source: NCBI BLink)."
                     /codon_start=1
                     /product="beta-galactosidase 5"
                     /protein_id="NP_175127.1"
                     /db_xref="Araport:AT1G45130"
                     /db_xref="GeneID:841080"
                     /db_xref="TAIR:AT1G45130"
                     /translation="MGTTILVLSKILTFLLTTMLIGSSVIQCSSVTYDKKAIVINGHR
                     RILLSGSIHYPRSTPEMWEDLIKKAKDGGLDVIDTYVFWNGHEPSPGTYNFEGRYDLV
                     RFIKTIQEVGLYVHLRIGPYVCAEWNFGGFPVWLKYVDGISFRTDNGPFKSAMQGFTE
                     KIVQMMKEHRFFASQGGPIILSQIENEFEPDLKGLGPAGHSYVNWAAKMAVGLNTGVP
                     WVMCKEDDAPDPIINTCNGFYCDYFTPNKPYKPTMWTEAWSGWFTEFGGTVPKRPVED
                     LAFGVARFIQKGGSYINYYMYHGGTNFGRTAGGPFITTSYDYDAPIDEYGLVQEPKYS
                     HLKQLHQAIKQCEAALVSSDPHVTKLGNYEEAHVFTAGKGSCVAFLTNYHMNAPAKVV
                     FNNRHYTLPAWSISILPDCRNVVFNTATVAAKTSHVQMVPSGSILYSVARYDEDIATY
                     GNRGTITARGLLEQVNVTRDTTDYLWYTTSVDIKASESFLRGGKWPTLTVDSAGHAVH
                     VFVNGHFYGSAFGTRENRKFSFSSQVNLRGGANKIALLSVAVGLPNVGPHFETWATGI
                     VGSVVLHGLDEGNKDLSWQKWTYQAGLRGESMNLVSPTEDSSVDWIKGSLAKQNKQPL
                     TWYKAYFDAPRGNEPLALDLKSMGKGQAWINGQSIGRYWMAFAKGDCGSCNYAGTYRQ
                     NKCQSGCGEPTQRWYHVPRSWLKPKGNLLVLFEELGGDISKVSVVKRSVN"
ORIGIN      
        1 attttctaca aaacccatag aaaagcaatc acttttccac cacaataaaa tcgaaaacaa
       61 acattttgta tgtatatgta aaagttaatg caaacattaa tttaaaacta tatggaaagc
      121 tccattaatt tatttttaat ctcccaacta attcactaca ccaattttgt atgagagtag
      181 gcgacgaaac cacaagtacc tatatcagag aatcagagac caacgtcact tatttacaca
      241 ctctgttttc ttttttttgg ttgcttcttc tctgatcttt ctttcttttt ttttttttga
      301 aagaatcaat ttccctctca aatcagaaat ctaaaaatgg gaacaacgat cttggttctc
      361 tccaagatcc taactttctt actaacaaca atgctgattg gatccagtgt gatccagtgt
      421 agtagtgtaa cctacgataa gaaagctatc gtcatcaatg gccaccgtag aatcctcctc
      481 tctggttcta ttcactaccc aagaagcact cctgagatgt gggaagatct tataaagaaa
      541 gctaaagacg gtggcttgga tgttattgat acttatgttt tctggaatgg tcatgaacct
      601 tctcctggaa cttacaattt cgaaggaaga tatgatttgg taagattcat taagacgatt
      661 caggaagtgg gtctttatgt tcatctcaga attggtcctt atgtttgtgc agaatggaat
      721 tttggagggt ttcctgtgtg gttgaagtat gtagatggga ttagtttcag aactgacaat
      781 ggacccttca agtctgcaat gcaaggattc acagagaaga ttgttcagat gatgaaagaa
      841 catagattct ttgcgtcaca aggtggacct atcattcttt ctcagattga gaatgagttt
      901 gaaccagatc ttaaagggct tggaccggct ggtcactcgt atgtcaattg ggctgcgaaa
      961 atggcggtcg gtttaaacac gggagtaccg tgggtgatgt gcaaggaaga tgatgcacct
     1021 gacccaatta taaacacttg caacggattc tactgtgatt attttactcc aaataaaccg
     1081 tataagccaa ctatgtggac agaggcatgg agtggctggt tcacagagtt tggtggaact
     1141 gttcctaaac gacctgtaga ggatctagca tttggagtag ctcgtttcat tcaaaagggc
     1201 ggttcgtata taaactacta catgtaccat ggaggaacaa actttggacg caccgcagga
     1261 ggtccattta tcaccactag ttatgactat gatgctccta tcgatgaata cgggttggtc
     1321 caagagccca agtacagtca tcttaagcag cttcatcagg caatcaagca atgtgaagct
     1381 gccttagttt cttctgatcc acatgttact aaactaggaa actacgagga ggctcatgtg
     1441 ttcactgctg gcaaaggaag ttgtgtagct ttcttaacga actatcacat gaatgcacct
     1501 gcaaaagtag tgttcaataa ccgacactat actctacctg cttggtccat cagcattctt
     1561 ccagattgta gaaacgttgt tttcaacact gcgacggttg ctgcaaagac atcacatgtg
     1621 caaatggtgc catctggttc catattgtac tcggttgcta gatacgatga agatattgct
     1681 acttatggaa accgtgggac aatcacagct cgtggattgt tggagcaggt taatgttaca
     1741 cgagatacaa ctgattacct gtggtacaca accagtgtgg atattaaggc atcagaatca
     1801 ttcttgcgtg gaggaaaatg gccaactctt acagtggatt ctgcagggca tgctgttcat
     1861 gtgtttgtca atggacattt ttacggatct gcctttggaa caagagaaaa cagaaagttt
     1921 tcatttagct cccaagtcaa tctacgaggt ggagctaaca aaatcgcact actgagtgta
     1981 gcagttgggt tgccgaatgt tggaccacat tttgagacgt gggccacagg aatcgtcggg
     2041 tctgtggtgc ttcatggcct tgacgagggt aacaaagact tgagttggca gaaatggact
     2101 tatcaggctg gtctgcgagg ggaatcaatg aacttggtct ctcctactga ggactcctct
     2161 gttgattgga tcaaaggctc attggctaag caaaacaaac aacctttgac atggtacaag
     2221 gcctattttg acgcgcctag agggaacgag ccgctggctt tggatctaaa gagtatgggg
     2281 aaagggcaag cttggataaa cgggcaaagc atagggagat actggatggc atttgccaaa
     2341 ggagactgcg gaagttgtaa ctacgctgga acatacaggc agaacaaatg ccagtctggt
     2401 tgtggcgagc cgacacaaag atggtatcat gttccgcgtt cgtggttgaa gccaaaaggg
     2461 aacttgttag tactttttga agaacttggt ggagatatat ccaaagtctc tgttgtgaag
     2521 agatcagtaa actaacttaa aaaataaaac caatattgtg tgtgcattac actaaaagca
     2581 ttactcgtgc tgtgtttaat ttatccctct ttgtgaacag aaaccatatt tgaaactcga
     2641 gatagttata atacaaaatg tgtagtaaaa atgcatcatt ttattatata ccaa
//
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