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Arabidopsis thaliana putative sterol-C-methyltransferase (At1g20330) mRNA, complete cds

GenBank: AY046042.1

FASTA Graphics 

LOCUS       AY046042                1433 bp    mRNA    linear   PLN 18-SEP-2002
DEFINITION  Arabidopsis thaliana putative sterol-C-methyltransferase
            (At1g20330) mRNA, complete cds.
ACCESSION   AY046042
VERSION     AY046042.1
KEYWORDS    FLI_CDNA.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (bases 1 to 1433)
  AUTHORS   Yamada,K., Liu,S.X., Sakano,H., Pham,P.K., Banh,J., Chung,M.K.,
            Goldsmith,A.D., Lee,J.M., Quach,H.L., Toriumi,M., Yu,G., Bowser,L.,
            Carninci,P., Chen,H., Cheuk,R., Hayashizaki,Y., Ishida,J.,
            Jones,T., Kamiya,A., Karlin-Neumann,G., Kawai,J., Kim,C., Lam,B.,
            Lin,J., Miranda,M., Narusaka,M., Nguyen,M., Palm,C.J., Sakurai,T.,
            Satou,M., Seki,M., Shinn,P., Southwick,A., Shinozaki,K.,
            Davis,R.W., Ecker,J.R. and Theologis,A.
  TITLE     Arabidopsis Full Length cDNA Clones
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1433)
  AUTHORS   Yamada,K., Liu,S.X., Pham,P.K., Banh,J., Dale,J.M., Goldsmith,A.D.,
            Jiang,P.X., Lee,J.M., Onodera,C.S., Quach,H.L., Tang,C.C.,
            Toriumi,M., Yamamura,Y., Yu,G., Yu,S., Bowser,L., Carninci,P.,
            Chen,H., Cheuk,R., Hayashizaki,Y., Ishida,J., Jones,T., Kamiya,A.,
            Karlin-Neumann,G., Kawai,J., Kim,C., Koesema,E., Lam,B., Lin,J.,
            Meyers,M.C., Miranda,M., Narusaka,M., Nguyen,M., Palm,C.J.,
            Sakurai,T., Satou,M., Seki,M., Shinn,P., Southwick,A., Tracy,S.E.,
            Shinozaki,K., Davis,R.W., Ecker,J.R. and Theologis,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-JUL-2001) Plant Gene Expression Center, 800 Buchanan
            Street, Albany, CA 94710, USA
COMMENT     RIKEN Genomic Sciences Center (GSC) members carried out the
            collection and clustering of RAFL cDNAs (RAFL cDNA : 'RIKEN
            Arabidopsis Full-Length cDNA'): Seki,M., Narusaka,M., Ishida,J.,
            Satou,M., Kamiya,A., Sakurai,T., Carninci,P., Kawai,J.,
            Hayashizaki,Y. and Shinozaki,K.
            
            The Salk, Stanford, PGEC (SSP) Consortium members carried out the
            sequencing and annotation of the RAFL cDNAs: Yamada,K., Liu,S.X.,
            Pham,P.K., Banh,J., Dale,J.M., Goldsmith,A.D., Jiang,P.X.,
            Lee,J.M., Onodera,C.S., Quach,H.L., Tang,C.C., Toriumi,M.,
            Yamamura,Y., Yu,G., Yu,S., Bowser,L., Chen,H., Cheuk,R., Jones,T.,
            Karlin-Neumann,G., Kim,C., Koesema,E., Lam,B., Lin,J., Meyers,M.C.,
            Miranda,M., Nguyen,M., Palm,C.J., Shinn,P., Southwick,A.,
            Tracy,S.E., Davis,R.W., Ecker,J.R. and Theologis,A.
            
            Yamada,K. (SSP/PGEC) and Seki,M. (RIKEN GSC) contributed equally to
            this work.  Shinozaki,K. (RIKEN GSC) and Theologis,A. (SSP/PGEC)
            contributed equally to this work as PIs.
            
            Annotation is based on the January 2002 version of the Arabidopsis
            genome submitted to GenBank.
FEATURES             Location/Qualifiers
     source          1..1433
                     /organism="Arabidopsis thaliana"
                     /mol_type="mRNA"
                     /db_xref="taxon:3702"
                     /chromosome="1"
                     /clone="RAFL07-11-E12 (R10887)"
                     /ecotype="Columbia"
                     /note="This clone is in a modified pBluescript vector
                     (FLC-1) as a BamHI/XhoI insert."
     gene            1..1433
                     /gene="At1g20330"
     5'UTR           1..71
                     /gene="At1g20330"
     misc_difference 2
                     /gene="At1g20330"
                     /note="compared to genomic sequence"
                     /replace="c"
     CDS             72..1157
                     /gene="At1g20330"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="Member of the ubiE/COQ5 methyltransferase family
                     PF|01209"
                     /codon_start=1
                     /product="putative sterol-C-methyltransferase"
                     /protein_id="AAK76716.1"
                     /translation="MDSLTLFFTGALVAVGIYWFLCVLGPAERKGKRAVDLSGGSISA
                     EKVQDNYKQYWSFFRRPKEIETAEKVPDFVDTFYNLVTDIYEWGWGQSFHFSPSIPGK
                     SHKDATRLHEEMAVDLIQVKPGQKILDVGCGVGGPMRAIASHSRANVVGITINEYQVN
                     RARLHNKKAGLDALCEVVCGNFLQMPFDDNSFDGAYSIEATCHAPKLEEVYAEIYRVL
                     KPGSMYVSYEWVTTEKFKAEDDEHVEVIQGIERGDALPGLRAYVDIAETAKKVGFEIV
                     KEKDLASPPAEPWWTRLKMGRLAYWRNHIVVQILSAVGVAPKGTVDVHEMLFKTADYL
                     TRGGETGIFSPMHMILCRKPESPEESS"
     3'UTR           1158..1433
                     /gene="At1g20330"
     misc_difference 1350
                     /gene="At1g20330"
                     /note="compared to genomic sequence"
                     /replace="g"
     misc_feature    1417
                     /gene="At1g20330"
                     /note="artifact within poly A tail"
ORIGIN      
        1 tgaggcaaag aagtaaaaga gacttaaaac tctctctctc tctctcttgg tcttcctcac
       61 tcttaacgaa aatggactct ttaacactct tcttcaccgg tgcactcgtc gccgtcggta
      121 tctactggtt cctctgcgtt ctcggtccag cagagcgtaa aggcaaacga gccgtagatc
      181 tctctggtgg ctcaatctcc gccgagaaag tccaagacaa ctacaaacag tactggtctt
      241 tcttccgccg tccaaaagaa atcgaaaccg ccgagaaagt tccagacttc gtcgacacat
      301 tctacaatct cgtcaccgac atatacgagt ggggatgggg acaatccttc cacttctcac
      361 catcaatccc cggaaaatct cacaaagacg ccacgcgcct ccacgaagag atggccgtag
      421 atctgatcca agtcaaacct ggtcaaaaga tcctagacgt cggatgcggt gtcggcggtc
      481 cgatgcgagc gattgcatct cactcgcgag ctaacgtagt cgggattaca ataaacgagt
      541 atcaggtgaa cagagctcgt ctccacaata agaaagctgg tctcgacgcg ctttgcgagg
      601 tcgtgtgtgg taacttcctc cagatgccgt tcgatgacaa cagtttcgac ggtgcttatt
      661 ccatcgaagc cacgtgtcac gcgccgaagc tggaagaagt gtacgcagag atctacaggg
      721 tgttgaaacc cggatctatg tatgtgtcgt acgagtgggt tacgacggag aaatttaagg
      781 cggaggatga cgaacacgtg gaggtaatcc aagggattga gagaggcgat gcgttaccag
      841 ggcttagggc ttacgtggat atagctgaga cggctaaaaa ggttgggttt gagatagtga
      901 aggagaagga tctggcgagt ccaccggctg agccgtggtg gactaggctt aagatgggta
      961 ggcttgctta ttggaggaat cacattgtgg ttcagatttt gtcagcggtt ggagttgctc
     1021 ctaaaggaac tgttgatgtt catgagatgt tgtttaagac tgctgattat ttgaccagag
     1081 gaggtgaaac cggaatattc tctccgatgc atatgattct ctgcagaaaa ccggagtcac
     1141 cggaggagag ttcttgagaa aggtagaaag gaaacatcac cggaaaaagt atggagaatt
     1201 ttctcaattt gtttttattt ttaagttaaa tcaacttggt tattgtacta tttttgtgtt
     1261 ttaatttggt ttgtgtttca agaattatta gttttttttt gttttgttgc atatgagaat
     1321 cttactcttg atttctccgc cgtagtgcca gcgagacata ggggattatt agtattttta
     1381 agtgtgttta agattgatta acaagttagt aaaaaagaaa aaaaaaaaaa aaa
//
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Reference sequence information

  • RefSeq mRNA
    See reference mRNA sequence for the SMT2 gene (NM_101884.4).

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