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Arabidopsis thaliana putative palmitoyl-protein thioesterase precursor (At3g60340) mRNA, complete cds

GenBank: AY035032.1

FASTA Graphics 

LOCUS       AY035032                1321 bp    mRNA    linear   PLN 18-SEP-2002
DEFINITION  Arabidopsis thaliana putative palmitoyl-protein thioesterase
            precursor (At3g60340) mRNA, complete cds.
ACCESSION   AY035032
VERSION     AY035032.1
KEYWORDS    FLI_CDNA.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (bases 1 to 1321)
  AUTHORS   Yamada,K., Liu,S.X., Sakano,H., Pham,P.K., Banh,J., Chung,M.K.,
            Goldsmith,A.D., Lee,J.M., Quach,H.L., Toriumi,M., Yu,G., Bowser,L.,
            Carninci,P., Chen,H., Cheuk,R., Hayashizaki,Y., Ishida,J.,
            Jones,T., Kamiya,A., Karlin-Neumann,G., Kawai,J., Kim,C., Lam,B.,
            Lin,J., Miranda,M., Narusaka,M., Nguyen,M., Palm,C.J., Sakurai,T.,
            Satou,M., Seki,M., Shinn,P., Southwick,A., Shinozaki,K.,
            Davis,R.W., Ecker,J.R. and Theologis,A.
  TITLE     Arabidopsis Full Length cDNA Clones
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1321)
  AUTHORS   Yamada,K., Liu,S.X., Sakano,H., Pham,P.K., Banh,J., Chung,M.K.,
            Goldsmith,A.D., Lee,J.M., Quach,H.L., Tang,C.C., Toriumi,M., Yu,G.,
            Bowser,L., Carninci,P., Chen,H., Cheuk,R., Hayashizaki,Y.,
            Ishida,J., Jones,T., Kamiya,A., Karlin-Neumann,G., Kawai,J.,
            Kim,C., Koesema,E., Lam,B., Lin,J., Meyers,M.C., Miranda,M.,
            Narusaka,M., Nguyen,M., Palm,C.J., Sakurai,T., Satou,M., Seki,M.,
            Shinn,P., Southwick,A., Shinozaki,K., Davis,R.W., Ecker,J.R. and
            Theologis,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-MAY-2001) Plant Gene Expression Center, 800 Buchanan
            Street, Albany, CA 94710, USA
COMMENT     RIKEN Genomic Sciences Center (GSC) members carried out the
            collection and clustering of RAFL cDNAs (RAFL cDNA : 'RIKEN
            Arabidopsis Full-Length cDNA'): Seki,M., Narusaka,M., Ishida,J.,
            Satou,M., Kamiya,A., Sakurai,T., Carninci,P., Kawai,J.,
            Hayashizaki,Y. and Shinozaki,K.
            
            The Salk, Stanford, PGEC (SSP) Consortium members carried out the
            sequencing and annotation of the RAFL cDNAs: Yamada,K., Liu,S.X.,
            Sakano,H., Pham,P.K., Banh,J., Chung,M.K., Goldsmith,A.D.,
            Lee,J.M., Quach,H.L., Tang,C.C., Toriumi,M., Yu,G., Bowser,L.,
            Chen,H., Cheuk,R., Jones,T., Karlin-Neumann,G., Kim,C., Koesema,E.,
            Lam,B., Lin,J., Meyers,M.C., Miranda,M., Nguyen,M., Palm,C.J.,
            Shinn,P., Southwick,A., Davis,R.W., Ecker,J.R. and Theologis,A.
            
            Yamada,K. (SSP/PGEC) and Seki,M. (RIKEN GSC) contributed equally to
            this work.  Shinozaki,K. (RIKEN GSC) and Theologis,A. (SSP/PGEC)
            contributed equally to this work as PIs.
            
            Annotation is based on the January 2002 version of the Arabidopsis
            genome submitted to GenBank.
FEATURES             Location/Qualifiers
     source          1..1321
                     /organism="Arabidopsis thaliana"
                     /mol_type="mRNA"
                     /db_xref="taxon:3702"
                     /chromosome="3"
                     /clone="RAFL05-08-K02 (R10164)"
                     /ecotype="Columbia"
                     /note="This clone is in a modified pBluescript vector
                     (Lambda ZAP) as a XhoI/SstI insert."
     gene            1..1321
                     /gene="At3g60340"
     5'UTR           1..186
                     /gene="At3g60340"
     CDS             187..1203
                     /gene="At3g60340"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /codon_start=1
                     /product="putative palmitoyl-protein thioesterase
                     precursor"
                     /protein_id="AAK59537.1"
                     /translation="MDFLKATIIVALICNFASLASSVPFIVLHGIGDKCSNAGVTQFT
                     EFLSDWSGSQGYCLEIGNGSWDSWTMPLLDQTSVVCEKVKSMPELSDGYSIVGPSQGN
                     MIGRALIEFCDGAPPVKSFVSVAGPHAGTASIPFCGATWICIMLDSMIKAEIYSDYMQ
                     EHLAPSGFLKIPTDIAGYMEGCRFLPKLNNELPVKNSTYKERFSSLENLVLIMFEHDT
                     ILIPKETSWFGYYPDGSFKTILPPQETKLYTEDWIGLRTLDEAGKVKFVNVSGNHLQI
                     SHTDMKKHIVPYLCDKSSSSSSTTMAVSGSSSSHQWLPSVGNIIMDLIGPEVDQLQLV
                     LRHV"
     misc_difference 268
                     /gene="At3g60340"
                     /note="compared to genomic sequence"
                     /replace="c"
     misc_difference 322
                     /gene="At3g60340"
                     /note="compared to genomic sequence resulting in an amino
                     acid sequence difference"
                     /replace="c"
     misc_difference 479
                     /gene="At3g60340"
                     /note="compared to genomic sequence resulting in an amino
                     acid sequence difference"
                     /replace="t"
     3'UTR           1204..1321
                     /gene="At3g60340"
     misc_feature    1304..1305
                     /gene="At3g60340"
                     /note="artifact within poly A tail"
ORIGIN      
        1 aaaatccggt cggcgacgag acttactttc gccgcaaaat ttgttctccg gtaccggata
       61 tttacgtatc tgttctcaaa ttttaccatt cccaccacta aaaccctaga ttaaaagctt
      121 caattaccgg aaaaagtctc tacttaagag atttatctgt ttgttgtctt aaatcacagg
      181 aagagaatgg attttcttaa ggcaacgatt atagttgccc taatttgcaa tttcgcctca
      241 ctggcgtctt ctgttccttt catagttttg catggaattg gggataaatg cagtaatgca
      301 ggagtgacac aattcacaga gtttttaagc gattggtctg gttctcaagg atattgcttg
      361 gagattggga atggctcatg ggactcatgg actatgcctc tccttgatca gacatcagtt
      421 gtttgtgaga aggtgaaaag tatgccagag cttagtgacg gttacagcat tgtggggcct
      481 tctcagggta acatgattgg tcgagctctc attgagtttt gcgatggagc accacctgtt
      541 aagagttttg tttcggtagc gggtcctcat gctggcactg catcgattcc gttctgtggt
      601 gctacctgga tttgcatcat gttggacagt atgatcaaag cagagatcta tagcgactat
      661 atgcaggaac atttggctcc tagcggtttt ctcaaaatcc caactgacat agcgggttac
      721 atggaaggct gtaggtttct cccaaagcta aacaacgaac ttccagtcaa aaactcgact
      781 tataaggaga ggttctcgag tttggagaat cttgtgctta ttatgtttga gcatgacaca
      841 atattgatac ctaaagaaac ctcatggttt ggatattatc ctgatgggtc tttcaagacc
      901 attcttccgc cgcaagagac caagctatat actgaagact ggattggttt gagaacctta
      961 gatgaagctg gaaaagtgaa gttcgttaac gtctctggaa atcatcttca gatatctcat
     1021 acagacatga agaagcatat agtgccatac ctctgtgata aatcatcgtc gtcatcatcc
     1081 acaacaatgg cagtttccgg atcatcttcc tcacaccagt ggcttccaag tgtagggaac
     1141 attattatgg atcttattgg tccagaagtg gatcagcttc agcttgtgct acgtcatgtg
     1201 taaatctgat gtcctgtgtt gttgtttgtt ctcttactaa acacgatcgt ctcgtgatat
     1261 gtttgtaact tgaagataaa acaagaaaac tgttccaaaa aaagcaaaaa aaaaaaaaaa
     1321 a
//
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