LOCUS AY035032 1321 bp mRNA linear PLN 18-SEP-2002
DEFINITION Arabidopsis thaliana putative palmitoyl-protein thioesterase
precursor (At3g60340) mRNA, complete cds.
ACCESSION AY035032
VERSION AY035032.1
KEYWORDS FLI_CDNA.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 1321)
AUTHORS Yamada,K., Liu,S.X., Sakano,H., Pham,P.K., Banh,J., Chung,M.K.,
Goldsmith,A.D., Lee,J.M., Quach,H.L., Toriumi,M., Yu,G., Bowser,L.,
Carninci,P., Chen,H., Cheuk,R., Hayashizaki,Y., Ishida,J.,
Jones,T., Kamiya,A., Karlin-Neumann,G., Kawai,J., Kim,C., Lam,B.,
Lin,J., Miranda,M., Narusaka,M., Nguyen,M., Palm,C.J., Sakurai,T.,
Satou,M., Seki,M., Shinn,P., Southwick,A., Shinozaki,K.,
Davis,R.W., Ecker,J.R. and Theologis,A.
TITLE Arabidopsis Full Length cDNA Clones
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 1321)
AUTHORS Yamada,K., Liu,S.X., Sakano,H., Pham,P.K., Banh,J., Chung,M.K.,
Goldsmith,A.D., Lee,J.M., Quach,H.L., Tang,C.C., Toriumi,M., Yu,G.,
Bowser,L., Carninci,P., Chen,H., Cheuk,R., Hayashizaki,Y.,
Ishida,J., Jones,T., Kamiya,A., Karlin-Neumann,G., Kawai,J.,
Kim,C., Koesema,E., Lam,B., Lin,J., Meyers,M.C., Miranda,M.,
Narusaka,M., Nguyen,M., Palm,C.J., Sakurai,T., Satou,M., Seki,M.,
Shinn,P., Southwick,A., Shinozaki,K., Davis,R.W., Ecker,J.R. and
Theologis,A.
TITLE Direct Submission
JOURNAL Submitted (14-MAY-2001) Plant Gene Expression Center, 800 Buchanan
Street, Albany, CA 94710, USA
COMMENT RIKEN Genomic Sciences Center (GSC) members carried out the
collection and clustering of RAFL cDNAs (RAFL cDNA : 'RIKEN
Arabidopsis Full-Length cDNA'): Seki,M., Narusaka,M., Ishida,J.,
Satou,M., Kamiya,A., Sakurai,T., Carninci,P., Kawai,J.,
Hayashizaki,Y. and Shinozaki,K.
The Salk, Stanford, PGEC (SSP) Consortium members carried out the
sequencing and annotation of the RAFL cDNAs: Yamada,K., Liu,S.X.,
Sakano,H., Pham,P.K., Banh,J., Chung,M.K., Goldsmith,A.D.,
Lee,J.M., Quach,H.L., Tang,C.C., Toriumi,M., Yu,G., Bowser,L.,
Chen,H., Cheuk,R., Jones,T., Karlin-Neumann,G., Kim,C., Koesema,E.,
Lam,B., Lin,J., Meyers,M.C., Miranda,M., Nguyen,M., Palm,C.J.,
Shinn,P., Southwick,A., Davis,R.W., Ecker,J.R. and Theologis,A.
Yamada,K. (SSP/PGEC) and Seki,M. (RIKEN GSC) contributed equally to
this work. Shinozaki,K. (RIKEN GSC) and Theologis,A. (SSP/PGEC)
contributed equally to this work as PIs.
Annotation is based on the January 2002 version of the Arabidopsis
genome submitted to GenBank.
FEATURES Location/Qualifiers
source 1..1321
/organism="Arabidopsis thaliana"
/mol_type="mRNA"
/db_xref="taxon:3702"
/chromosome="3"
/clone="RAFL05-08-K02 (R10164)"
/ecotype="Columbia"
/note="This clone is in a modified pBluescript vector
(Lambda ZAP) as a XhoI/SstI insert."
gene 1..1321
/gene="At3g60340"
5'UTR 1..186
/gene="At3g60340"
CDS 187..1203
/gene="At3g60340"
/experiment="experimental evidence, no additional details
recorded"
/codon_start=1
/product="putative palmitoyl-protein thioesterase
precursor"
/protein_id="AAK59537.1"
/translation="MDFLKATIIVALICNFASLASSVPFIVLHGIGDKCSNAGVTQFT
EFLSDWSGSQGYCLEIGNGSWDSWTMPLLDQTSVVCEKVKSMPELSDGYSIVGPSQGN
MIGRALIEFCDGAPPVKSFVSVAGPHAGTASIPFCGATWICIMLDSMIKAEIYSDYMQ
EHLAPSGFLKIPTDIAGYMEGCRFLPKLNNELPVKNSTYKERFSSLENLVLIMFEHDT
ILIPKETSWFGYYPDGSFKTILPPQETKLYTEDWIGLRTLDEAGKVKFVNVSGNHLQI
SHTDMKKHIVPYLCDKSSSSSSTTMAVSGSSSSHQWLPSVGNIIMDLIGPEVDQLQLV
LRHV"
misc_difference 268
/gene="At3g60340"
/note="compared to genomic sequence"
/replace="c"
misc_difference 322
/gene="At3g60340"
/note="compared to genomic sequence resulting in an amino
acid sequence difference"
/replace="c"
misc_difference 479
/gene="At3g60340"
/note="compared to genomic sequence resulting in an amino
acid sequence difference"
/replace="t"
3'UTR 1204..1321
/gene="At3g60340"
misc_feature 1304..1305
/gene="At3g60340"
/note="artifact within poly A tail"
ORIGIN
1 aaaatccggt cggcgacgag acttactttc gccgcaaaat ttgttctccg gtaccggata
61 tttacgtatc tgttctcaaa ttttaccatt cccaccacta aaaccctaga ttaaaagctt
121 caattaccgg aaaaagtctc tacttaagag atttatctgt ttgttgtctt aaatcacagg
181 aagagaatgg attttcttaa ggcaacgatt atagttgccc taatttgcaa tttcgcctca
241 ctggcgtctt ctgttccttt catagttttg catggaattg gggataaatg cagtaatgca
301 ggagtgacac aattcacaga gtttttaagc gattggtctg gttctcaagg atattgcttg
361 gagattggga atggctcatg ggactcatgg actatgcctc tccttgatca gacatcagtt
421 gtttgtgaga aggtgaaaag tatgccagag cttagtgacg gttacagcat tgtggggcct
481 tctcagggta acatgattgg tcgagctctc attgagtttt gcgatggagc accacctgtt
541 aagagttttg tttcggtagc gggtcctcat gctggcactg catcgattcc gttctgtggt
601 gctacctgga tttgcatcat gttggacagt atgatcaaag cagagatcta tagcgactat
661 atgcaggaac atttggctcc tagcggtttt ctcaaaatcc caactgacat agcgggttac
721 atggaaggct gtaggtttct cccaaagcta aacaacgaac ttccagtcaa aaactcgact
781 tataaggaga ggttctcgag tttggagaat cttgtgctta ttatgtttga gcatgacaca
841 atattgatac ctaaagaaac ctcatggttt ggatattatc ctgatgggtc tttcaagacc
901 attcttccgc cgcaagagac caagctatat actgaagact ggattggttt gagaacctta
961 gatgaagctg gaaaagtgaa gttcgttaac gtctctggaa atcatcttca gatatctcat
1021 acagacatga agaagcatat agtgccatac ctctgtgata aatcatcgtc gtcatcatcc
1081 acaacaatgg cagtttccgg atcatcttcc tcacaccagt ggcttccaag tgtagggaac
1141 attattatgg atcttattgg tccagaagtg gatcagcttc agcttgtgct acgtcatgtg
1201 taaatctgat gtcctgtgtt gttgtttgtt ctcttactaa acacgatcgt ctcgtgatat
1261 gtttgtaact tgaagataaa acaagaaaac tgttccaaaa aaagcaaaaa aaaaaaaaaa
1321 a
//