LOCUS AK045081 2484 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus 9.5 days embryo parthenogenote cDNA, RIKEN full-length
enriched library, clone:B130030L03 product:unclassifiable, full
insert sequence.
ACCESSION AK045081
VERSION AK045081.1
KEYWORDS HTC; HTC_FLI; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
PUBMED 10349636
REFERENCE 2
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10 (10), 1617-1630 (2000)
PUBMED 11042159
REFERENCE 3
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N., Carninci,P.,
Konno,H., Akiyama,J., Nishi,K., Kitsunai,T., Tashiro,H., Itoh,M.,
Sumi,N., Ishii,Y., Nakamura,S., Hazama,M., Nishine,T., Harada,A.,
Yamamoto,R., Matsumoto,H., Sakaguchi,S., Ikegami,T., Kashiwagi,K.,
Fujiwake,S., Inoue,K., Togawa,Y., Izawa,M., Ohara,E., Watahiki,M.,
Yoneda,Y., Ishikawa,T., Ozawa,K., Tanaka,T., Matsuura,S., Kawai,J.,
Okazaki,Y., Muramatsu,M., Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system--384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10 (11), 1757-1771 (2000)
PUBMED 11076861
REFERENCE 4
AUTHORS Kawai,J., Shinagawa,A., Shibata,K., Yoshino,M., Itoh,M., Ishii,Y.,
Arakawa,T., Hara,A., Fukunishi,Y., Konno,H., Adachi,J., Fukuda,S.,
Aizawa,K., Izawa,M., Nishi,K., Kiyosawa,H., Kondo,S., Yamanaka,I.,
Saito,T., Okazaki,Y., Gojobori,T., Bono,H., Kasukawa,T., Saito,R.,
Kadota,K., Matsuda,H., Ashburner,M., Batalov,S., Casavant,T.,
Fleischmann,W., Gaasterland,T., Gissi,C., King,B., Kochiwa,H.,
Kuehl,P., Lewis,S., Matsuo,Y., Nikaido,I., Pesole,G.,
Quackenbush,J., Schriml,L.M., Staubli,F., Suzuki,R., Tomita,M.,
Wagner,L., Washio,T., Sakai,K., Okido,T., Furuno,M., Aono,H.,
Baldarelli,R., Barsh,G., Blake,J., Boffelli,D., Bojunga,N.,
Carninci,P., de Bonaldo,M.F., Brownstein,M.J., Bult,C.,
Fletcher,C., Fujita,M., Gariboldi,M., Gustincich,S., Hill,D.,
Hofmann,M., Hume,D.A., Kamiya,M., Lee,N.H., Lyons,P.,
Marchionni,L., Mashima,J., Mazzarelli,J., Mombaerts,P., Nordone,P.,
Ring,B., Ringwald,M., Rodriguez,I., Sakamoto,N., Sasaki,H.,
Sato,K., Schonbach,C., Seya,T., Shibata,Y., Storch,K.F., Suzuki,H.,
Toyo-oka,K., Wang,K.H., Weitz,C., Whittaker,C., Wilming,L.,
Wynshaw-Boris,A., Yoshida,K., Hasegawa,Y., Kawaji,H., Kohtsuki,S.
and Hayashizaki,Y.
CONSRTM RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409 (6821), 685-690 (2001)
PUBMED 11217851
REFERENCE 5
AUTHORS Okazaki,Y., Furuno,M., Kasukawa,T., Adachi,J., Bono,H., Kondo,S.,
Nikaido,I., Osato,N., Saito,R., Suzuki,H., Yamanaka,I.,
Kiyosawa,H., Yagi,K., Tomaru,Y., Hasegawa,Y., Nogami,A.,
Schonbach,C., Gojobori,T., Baldarelli,R., Hill,D.P., Bult,C.,
Hume,D.A., Quackenbush,J., Schriml,L.M., Kanapin,A., Matsuda,H.,
Batalov,S., Beisel,K.W., Blake,J.A., Bradt,D., Brusic,V.,
Chothia,C., Corbani,L.E., Cousins,S., Dalla,E., Dragani,T.A.,
Fletcher,C.F., Forrest,A., Frazer,K.S., Gaasterland,T.,
Gariboldi,M., Gissi,C., Godzik,A., Gough,J., Grimmond,S.,
Gustincich,S., Hirokawa,N., Jackson,I.J., Jarvis,E.D., Kanai,A.,
Kawaji,H., Kawasawa,Y., Kedzierski,R.M., King,B.L., Konagaya,A.,
Kurochkin,I.V., Lee,Y., Lenhard,B., Lyons,P.A., Maglott,D.R.,
Maltais,L., Marchionni,L., McKenzie,L., Miki,H., Nagashima,T.,
Numata,K., Okido,T., Pavan,W.J., Pertea,G., Pesole,G.,
Petrovsky,N., Pillai,R., Pontius,J.U., Qi,D., Ramachandran,S.,
Ravasi,T., Reed,J.C., Reed,D.J., Reid,J., Ring,B.Z., Ringwald,M.,
Sandelin,A., Schneider,C., Semple,C.A., Setou,M., Shimada,K.,
Sultana,R., Takenaka,Y., Taylor,M.S., Teasdale,R.D., Tomita,M.,
Verardo,R., Wagner,L., Wahlestedt,C., Wang,Y., Watanabe,Y.,
Wells,C., Wilming,L.G., Wynshaw-Boris,A., Yanagisawa,M., Yang,I.,
Yang,L., Yuan,Z., Zavolan,M., Zhu,Y., Zimmer,A., Carninci,P.,
Hayatsu,N., Hirozane-Kishikawa,T., Konno,H., Nakamura,M.,
Sakazume,N., Sato,K., Shiraki,T., Waki,K., Kawai,J., Aizawa,K.,
Arakawa,T., Fukuda,S., Hara,A., Hashizume,W., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Miyazaki,A., Sakai,K., Sasaki,D., Shibata,K.,
Shinagawa,A., Yasunishi,A., Yoshino,M., Waterston,R., Lander,E.S.,
Rogers,J., Birney,E. and Hayashizaki,Y.
CONSRTM FANTOM Consortium; RIKEN Genome Exploration Research Group Phase I
& II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420 (6915), 563-573 (2002)
PUBMED 12466851
REFERENCE 6
AUTHORS Carninci,P., Kasukawa,T., Katayama,S., Gough,J., Frith,M.C.,
Maeda,N., Oyama,R., Ravasi,T., Lenhard,B., Wells,C., Kodzius,R.,
Shimokawa,K., Bajic,V.B., Brenner,S.E., Batalov,S., Forrest,A.R.,
Zavolan,M., Davis,M.J., Wilming,L.G., Aidinis,V., Allen,J.E.,
Ambesi-Impiombato,A., Apweiler,R., Aturaliya,R.N., Bailey,T.L.,
Bansal,M., Baxter,L., Beisel,K.W., Bersano,T., Bono,H., Chalk,A.M.,
Chiu,K.P., Choudhary,V., Christoffels,A., Clutterbuck,D.R.,
Crowe,M.L., Dalla,E., Dalrymple,B.P., de Bono,B., Della Gatta,G.,
di Bernardo,D., Down,T., Engstrom,P., Fagiolini,M., Faulkner,G.,
Fletcher,C.F., Fukushima,T., Furuno,M., Futaki,S., Gariboldi,M.,
Georgii-Hemming,P., Gingeras,T.R., Gojobori,T., Green,R.E.,
Gustincich,S., Harbers,M., Hayashi,Y., Hensch,T.K., Hirokawa,N.,
Hill,D., Huminiecki,L., Iacono,M., Ikeo,K., Iwama,A., Ishikawa,T.,
Jakt,M., Kanapin,A., Katoh,M., Kawasawa,Y., Kelso,J., Kitamura,H.,
Kitano,H., Kollias,G., Krishnan,S.P., Kruger,A., Kummerfeld,S.K.,
Kurochkin,I.V., Lareau,L.F., Lazarevic,D., Lipovich,L., Liu,J.,
Liuni,S., McWilliam,S., Madan Babu,M., Madera,M., Marchionni,L.,
Matsuda,H., Matsuzawa,S., Miki,H., Mignone,F., Miyake,S.,
Morris,K., Mottagui-Tabar,S., Mulder,N., Nakano,N., Nakauchi,H.,
Ng,P., Nilsson,R., Nishiguchi,S., Nishikawa,S., Nori,F., Ohara,O.,
Okazaki,Y., Orlando,V., Pang,K.C., Pavan,W.J., Pavesi,G.,
Pesole,G., Petrovsky,N., Piazza,S., Reed,J., Reid,J.F., Ring,B.Z.,
Ringwald,M., Rost,B., Ruan,Y., Salzberg,S.L., Sandelin,A.,
Schneider,C., Schonbach,C., Sekiguchi,K., Semple,C.A., Seno,S.,
Sessa,L., Sheng,Y., Shibata,Y., Shimada,H., Shimada,K., Silva,D.,
Sinclair,B., Sperling,S., Stupka,E., Sugiura,K., Sultana,R.,
Takenaka,Y., Taki,K., Tammoja,K., Tan,S.L., Tang,S., Taylor,M.S.,
Tegner,J., Teichmann,S.A., Ueda,H.R., van Nimwegen,E., Verardo,R.,
Wei,C.L., Yagi,K., Yamanishi,H., Zabarovsky,E., Zhu,S., Zimmer,A.,
Hide,W., Bult,C., Grimmond,S.M., Teasdale,R.D., Liu,E.T.,
Brusic,V., Quackenbush,J., Wahlestedt,C., Mattick,J.S., Hume,D.A.,
Kai,C., Sasaki,D., Tomaru,Y., Fukuda,S., Kanamori-Katayama,M.,
Suzuki,M., Aoki,J., Arakawa,T., Iida,J., Imamura,K., Itoh,M.,
Kato,T., Kawaji,H., Kawagashira,N., Kawashima,T., Kojima,M.,
Kondo,S., Konno,H., Nakano,K., Ninomiya,N., Nishio,T., Okada,M.,
Plessy,C., Shibata,K., Shiraki,T., Suzuki,S., Tagami,M., Waki,K.,
Watahiki,A., Okamura-Oho,Y., Suzuki,H., Kawai,J. and Hayashizaki,Y.
CONSRTM FANTOM Consortium; RIKEN Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The transcriptional landscape of the mammalian genome
JOURNAL Science 309 (5740), 1559-1563 (2005)
PUBMED 16141072
REFERENCE 7
AUTHORS Katayama,S., Tomaru,Y., Kasukawa,T., Waki,K., Nakanishi,M.,
Nakamura,M., Nishida,H., Yap,C.C., Suzuki,M., Kawai,J., Suzuki,H.,
Carninci,P., Hayashizaki,Y., Wells,C., Frith,M., Ravasi,T.,
Pang,K.C., Hallinan,J., Mattick,J., Hume,D.A., Lipovich,L.,
Batalov,S., Engstrom,P.G., Mizuno,Y., Faghihi,M.A., Sandelin,A.,
Chalk,A.M., Mottagui-Tabar,S., Liang,Z., Lenhard,B. and
Wahlestedt,C.
CONSRTM RIKEN Genome Exploration Research Group; Genome Science Group
(Genome Network Project Core Group); FANTOM Consortium
TITLE Antisense transcription in the mammalian transcriptome
JOURNAL Science 309 (5740), 1564-1566 (2005)
PUBMED 16141073
REFERENCE 8 (bases 1 to 2484)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H., Carninci,P.,
Fukuda,S., Furuno,M., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hirozane,T.,
Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kasukawa,T.,
Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M., Ohsato,N.,
Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N.,
Sano,H., Sasaki,D., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Takeda,Y., Tanaka,T., Tomaru,A., Toya,T., Yasunishi,A.,
Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (16-JUL-2001) Contact:Yoshihide Hayashizaki The Institute
of Physical and Chemical Research (RIKEN), Omics Science Center,
RIKEN Yokohama Institute; 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama,
Kanagawa 230-0045, Japan URL :http://www.osc.riken.jp/
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=B130030L03.
FEATURES Location/Qualifiers
source 1..2484
/organism="Mus musculus"
/mol_type="mRNA"
/strain="C57BL/6J"
/db_xref="FANTOM_DB:B130030L03"
/db_xref="MGI:MGI:2410440"
/db_xref="taxon:10090"
/clone="B130030L03"
/tissue_type="parthenogenote"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/dev_stage="9.5 days embryo"
misc_feature 1..2484
/note="putative;
unclassifiable"
ORIGIN
1 gatcatgaac gtaatggatg catattatgt aaaagtgata aatactgtga accacatgat
61 tatgattacc tctgcccttg tgaatggcat cagacagacc ataataggca tctaagtgaa
121 atagaaaaca atattaaaaa gaaagcttgc agttgcgaag gatttccatt ccatgaggta
181 ataatccaac tgtgtatttt ttttaattgt tatatggaga aattttaatc cagaacatga
241 ctattctggt aagaaatgac accaaagacc ttctaggtct gtgtgatctg gctggagtac
301 agtcatggcc cttcatccca ggagacagag gcaaacagat ctgagttcaa ggccagccta
361 gtatagagca agtatcagat aaagagaagc ttaggtccag gtgttctagt gcacaacttt
421 aatcccagca ctcaagagac agaggcatgc agatctcttg agtgctagtc aattctcttc
481 gatgagttca tttgagtcgg tgagttgaga ggtaggcagt agaattgagt tcatggaatt
541 cagaggttgt cttaccagga cagttataga gagacaggtt agaggaaaaa aaaaaaaaaa
601 aacaagctag acatggatga agacagatcc tgccagagag tgagaagaag ccaaaagatt
661 agaacatatt gccaaagtta atatgggccc aagaagagca attcagggga ggcagagaga
721 gaaaagccag attagatcag tcagtttgga gaggagttag agccagagca gctgagttaa
781 accagccagc aagaattcag aaagagctgg aagacgtgag cttattcagc aggaagtctc
841 agaggctgaa aacactctag gtgtaggctt aggttggatt gtacagaggc ttgaaacttc
901 caagactagg cctagcttag cagagggagg cagaaagcct ttggagacaa ttacttcagg
961 agaattaaag ttacttttaa gtcctgattt ttgtcttttt attttttcac ttaggtcatc
1021 caagagttcc ttttgaataa gaataaaatg ttgaaaccga tcacatacca aagacctgat
1081 ttattattgt ttcaggtatc tggaagtaaa ttcttactta ataatacaaa attagatatg
1141 agaaagatca aaaggatatt agcttccatg tgtgagagga gacttaaaac ctaaaacaga
1201 taactgttga ctgccccact attactcatt attcacctcc aacctttacc ccttggctgt
1261 gtaagatcca tacttttcag accataaggc aaacacagac tgcttctcag aaagatgtct
1321 cggttactat gtgcagacaa gtcgaatcca ggaatatgtc caggaaagaa ggttcaggac
1381 aagggatgct aagatcaaag acactgacta tgaaatgtcc tgaaaataga agtaatatta
1441 ccacctcgtc aaatcaccat gagtgttaaa tgaggttatt ttaacctgtg atgttgtaat
1501 tagggaaaca gatggctcag tgaacctact tgcacattac cttgctggta gtcattatac
1561 tttataaatg tcttcctact taatctacat aaactgtgaa cagggttaca ttctctccat
1621 ttatagattg aaaaatgacc taggagggtc aaggagcatc cccccccctc cttacataga
1681 ctggtactct ggtggagggc cttctcaacc aggttgtcat ttgacacctt ctccttaggg
1741 agctccttgt ttttttctgg aaatatcatc actaatatta ctttagcatt actcttaaag
1801 caaaaataat attgtcttaa gagtatttct tgttttaaaa gtaatattta ctttaaatat
1861 ttatttactg tatttctaga gatttactgt tcaaaaaatg gagtggccca gtcactatgc
1921 atgtgaaaaa ttgttggtgc ttttgacccg ctatgacatg atagaaagaa aacatggtag
1981 aaagacctcc aatcaactac agccaattag gtaatgtatg gttgacactg gagacatggc
2041 tcagcagtta agaataactg ttgctctggc aagggacctg ggttcacttc ccagcaccca
2101 aatgctagtg tacaaccatc tgtgactcca gttccaggga atctgatgcc ttcttctggc
2161 tattataggc accacgaatc cttgtgatgt acagacatat atgtatgtgg gcaaaacata
2221 catatgttta aaataaataa atctaaaaaa taaattttat tttatttttt aaataaaaat
2281 ttatttattt gaattttaaa ataaatttaa aactattagt aaaaagaatt ttgtgataaa
2341 ctgtttccac ttgaatattt gataatcaga agtgttgctc cctatgggta tggtatctgt
2401 tctccaaaag tcaaggaaag cccagaaatt aaaagcataa ttagttcagg acagccagag
2461 ctacatagtg agactgtgtc tctc
//