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Mus musculus 10 days neonate cortex cDNA, RIKEN full-length enriched library, clone:A830089E20 product:unclassifiable, full insert sequence

GenBank: AK044091.1

FASTA Graphics 

LOCUS       AK044091                3731 bp    mRNA    linear   HTC 06-OCT-2010
DEFINITION  Mus musculus 10 days neonate cortex cDNA, RIKEN full-length
            enriched library, clone:A830089E20 product:unclassifiable, full
            insert sequence.
ACCESSION   AK044091
VERSION     AK044091.1
KEYWORDS    HTC; HTC_FLI; CAP trapper.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1
  AUTHORS   Carninci,P. and Hayashizaki,Y.
  TITLE     High-efficiency full-length cDNA cloning
  JOURNAL   Meth. Enzymol. 303, 19-44 (1999)
   PUBMED   10349636
REFERENCE   2
  AUTHORS   Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
            Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
  TITLE     Normalization and subtraction of cap-trapper-selected cDNAs to
            prepare full-length cDNA libraries for rapid discovery of new genes
  JOURNAL   Genome Res. 10 (10), 1617-1630 (2000)
   PUBMED   11042159
REFERENCE   3
  AUTHORS   Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N., Carninci,P.,
            Konno,H., Akiyama,J., Nishi,K., Kitsunai,T., Tashiro,H., Itoh,M.,
            Sumi,N., Ishii,Y., Nakamura,S., Hazama,M., Nishine,T., Harada,A.,
            Yamamoto,R., Matsumoto,H., Sakaguchi,S., Ikegami,T., Kashiwagi,K.,
            Fujiwake,S., Inoue,K., Togawa,Y., Izawa,M., Ohara,E., Watahiki,M.,
            Yoneda,Y., Ishikawa,T., Ozawa,K., Tanaka,T., Matsuura,S., Kawai,J.,
            Okazaki,Y., Muramatsu,M., Inoue,Y., Kira,A. and Hayashizaki,Y.
  TITLE     RIKEN integrated sequence analysis (RISA) system--384-format
            sequencing pipeline with 384 multicapillary sequencer
  JOURNAL   Genome Res. 10 (11), 1757-1771 (2000)
   PUBMED   11076861
REFERENCE   4
  AUTHORS   Kawai,J., Shinagawa,A., Shibata,K., Yoshino,M., Itoh,M., Ishii,Y.,
            Arakawa,T., Hara,A., Fukunishi,Y., Konno,H., Adachi,J., Fukuda,S.,
            Aizawa,K., Izawa,M., Nishi,K., Kiyosawa,H., Kondo,S., Yamanaka,I.,
            Saito,T., Okazaki,Y., Gojobori,T., Bono,H., Kasukawa,T., Saito,R.,
            Kadota,K., Matsuda,H., Ashburner,M., Batalov,S., Casavant,T.,
            Fleischmann,W., Gaasterland,T., Gissi,C., King,B., Kochiwa,H.,
            Kuehl,P., Lewis,S., Matsuo,Y., Nikaido,I., Pesole,G.,
            Quackenbush,J., Schriml,L.M., Staubli,F., Suzuki,R., Tomita,M.,
            Wagner,L., Washio,T., Sakai,K., Okido,T., Furuno,M., Aono,H.,
            Baldarelli,R., Barsh,G., Blake,J., Boffelli,D., Bojunga,N.,
            Carninci,P., de Bonaldo,M.F., Brownstein,M.J., Bult,C.,
            Fletcher,C., Fujita,M., Gariboldi,M., Gustincich,S., Hill,D.,
            Hofmann,M., Hume,D.A., Kamiya,M., Lee,N.H., Lyons,P.,
            Marchionni,L., Mashima,J., Mazzarelli,J., Mombaerts,P., Nordone,P.,
            Ring,B., Ringwald,M., Rodriguez,I., Sakamoto,N., Sasaki,H.,
            Sato,K., Schonbach,C., Seya,T., Shibata,Y., Storch,K.F., Suzuki,H.,
            Toyo-oka,K., Wang,K.H., Weitz,C., Whittaker,C., Wilming,L.,
            Wynshaw-Boris,A., Yoshida,K., Hasegawa,Y., Kawaji,H., Kohtsuki,S.
            and Hayashizaki,Y.
  CONSRTM   RIKEN Genome Exploration Research Group Phase II Team and the
            FANTOM Consortium
  TITLE     Functional annotation of a full-length mouse cDNA collection
  JOURNAL   Nature 409 (6821), 685-690 (2001)
   PUBMED   11217851
REFERENCE   5
  AUTHORS   Okazaki,Y., Furuno,M., Kasukawa,T., Adachi,J., Bono,H., Kondo,S.,
            Nikaido,I., Osato,N., Saito,R., Suzuki,H., Yamanaka,I.,
            Kiyosawa,H., Yagi,K., Tomaru,Y., Hasegawa,Y., Nogami,A.,
            Schonbach,C., Gojobori,T., Baldarelli,R., Hill,D.P., Bult,C.,
            Hume,D.A., Quackenbush,J., Schriml,L.M., Kanapin,A., Matsuda,H.,
            Batalov,S., Beisel,K.W., Blake,J.A., Bradt,D., Brusic,V.,
            Chothia,C., Corbani,L.E., Cousins,S., Dalla,E., Dragani,T.A.,
            Fletcher,C.F., Forrest,A., Frazer,K.S., Gaasterland,T.,
            Gariboldi,M., Gissi,C., Godzik,A., Gough,J., Grimmond,S.,
            Gustincich,S., Hirokawa,N., Jackson,I.J., Jarvis,E.D., Kanai,A.,
            Kawaji,H., Kawasawa,Y., Kedzierski,R.M., King,B.L., Konagaya,A.,
            Kurochkin,I.V., Lee,Y., Lenhard,B., Lyons,P.A., Maglott,D.R.,
            Maltais,L., Marchionni,L., McKenzie,L., Miki,H., Nagashima,T.,
            Numata,K., Okido,T., Pavan,W.J., Pertea,G., Pesole,G.,
            Petrovsky,N., Pillai,R., Pontius,J.U., Qi,D., Ramachandran,S.,
            Ravasi,T., Reed,J.C., Reed,D.J., Reid,J., Ring,B.Z., Ringwald,M.,
            Sandelin,A., Schneider,C., Semple,C.A., Setou,M., Shimada,K.,
            Sultana,R., Takenaka,Y., Taylor,M.S., Teasdale,R.D., Tomita,M.,
            Verardo,R., Wagner,L., Wahlestedt,C., Wang,Y., Watanabe,Y.,
            Wells,C., Wilming,L.G., Wynshaw-Boris,A., Yanagisawa,M., Yang,I.,
            Yang,L., Yuan,Z., Zavolan,M., Zhu,Y., Zimmer,A., Carninci,P.,
            Hayatsu,N., Hirozane-Kishikawa,T., Konno,H., Nakamura,M.,
            Sakazume,N., Sato,K., Shiraki,T., Waki,K., Kawai,J., Aizawa,K.,
            Arakawa,T., Fukuda,S., Hara,A., Hashizume,W., Imotani,K., Ishii,Y.,
            Itoh,M., Kagawa,I., Miyazaki,A., Sakai,K., Sasaki,D., Shibata,K.,
            Shinagawa,A., Yasunishi,A., Yoshino,M., Waterston,R., Lander,E.S.,
            Rogers,J., Birney,E. and Hayashizaki,Y.
  CONSRTM   FANTOM Consortium; RIKEN Genome Exploration Research Group Phase I
            & II Team
  TITLE     Analysis of the mouse transcriptome based on functional annotation
            of 60,770 full-length cDNAs
  JOURNAL   Nature 420 (6915), 563-573 (2002)
   PUBMED   12466851
REFERENCE   6
  AUTHORS   Carninci,P., Kasukawa,T., Katayama,S., Gough,J., Frith,M.C.,
            Maeda,N., Oyama,R., Ravasi,T., Lenhard,B., Wells,C., Kodzius,R.,
            Shimokawa,K., Bajic,V.B., Brenner,S.E., Batalov,S., Forrest,A.R.,
            Zavolan,M., Davis,M.J., Wilming,L.G., Aidinis,V., Allen,J.E.,
            Ambesi-Impiombato,A., Apweiler,R., Aturaliya,R.N., Bailey,T.L.,
            Bansal,M., Baxter,L., Beisel,K.W., Bersano,T., Bono,H., Chalk,A.M.,
            Chiu,K.P., Choudhary,V., Christoffels,A., Clutterbuck,D.R.,
            Crowe,M.L., Dalla,E., Dalrymple,B.P., de Bono,B., Della Gatta,G.,
            di Bernardo,D., Down,T., Engstrom,P., Fagiolini,M., Faulkner,G.,
            Fletcher,C.F., Fukushima,T., Furuno,M., Futaki,S., Gariboldi,M.,
            Georgii-Hemming,P., Gingeras,T.R., Gojobori,T., Green,R.E.,
            Gustincich,S., Harbers,M., Hayashi,Y., Hensch,T.K., Hirokawa,N.,
            Hill,D., Huminiecki,L., Iacono,M., Ikeo,K., Iwama,A., Ishikawa,T.,
            Jakt,M., Kanapin,A., Katoh,M., Kawasawa,Y., Kelso,J., Kitamura,H.,
            Kitano,H., Kollias,G., Krishnan,S.P., Kruger,A., Kummerfeld,S.K.,
            Kurochkin,I.V., Lareau,L.F., Lazarevic,D., Lipovich,L., Liu,J.,
            Liuni,S., McWilliam,S., Madan Babu,M., Madera,M., Marchionni,L.,
            Matsuda,H., Matsuzawa,S., Miki,H., Mignone,F., Miyake,S.,
            Morris,K., Mottagui-Tabar,S., Mulder,N., Nakano,N., Nakauchi,H.,
            Ng,P., Nilsson,R., Nishiguchi,S., Nishikawa,S., Nori,F., Ohara,O.,
            Okazaki,Y., Orlando,V., Pang,K.C., Pavan,W.J., Pavesi,G.,
            Pesole,G., Petrovsky,N., Piazza,S., Reed,J., Reid,J.F., Ring,B.Z.,
            Ringwald,M., Rost,B., Ruan,Y., Salzberg,S.L., Sandelin,A.,
            Schneider,C., Schonbach,C., Sekiguchi,K., Semple,C.A., Seno,S.,
            Sessa,L., Sheng,Y., Shibata,Y., Shimada,H., Shimada,K., Silva,D.,
            Sinclair,B., Sperling,S., Stupka,E., Sugiura,K., Sultana,R.,
            Takenaka,Y., Taki,K., Tammoja,K., Tan,S.L., Tang,S., Taylor,M.S.,
            Tegner,J., Teichmann,S.A., Ueda,H.R., van Nimwegen,E., Verardo,R.,
            Wei,C.L., Yagi,K., Yamanishi,H., Zabarovsky,E., Zhu,S., Zimmer,A.,
            Hide,W., Bult,C., Grimmond,S.M., Teasdale,R.D., Liu,E.T.,
            Brusic,V., Quackenbush,J., Wahlestedt,C., Mattick,J.S., Hume,D.A.,
            Kai,C., Sasaki,D., Tomaru,Y., Fukuda,S., Kanamori-Katayama,M.,
            Suzuki,M., Aoki,J., Arakawa,T., Iida,J., Imamura,K., Itoh,M.,
            Kato,T., Kawaji,H., Kawagashira,N., Kawashima,T., Kojima,M.,
            Kondo,S., Konno,H., Nakano,K., Ninomiya,N., Nishio,T., Okada,M.,
            Plessy,C., Shibata,K., Shiraki,T., Suzuki,S., Tagami,M., Waki,K.,
            Watahiki,A., Okamura-Oho,Y., Suzuki,H., Kawai,J. and Hayashizaki,Y.
  CONSRTM   FANTOM Consortium; RIKEN Genome Exploration Research Group and
            Genome Science Group (Genome Network Project Core Group)
  TITLE     The transcriptional landscape of the mammalian genome
  JOURNAL   Science 309 (5740), 1559-1563 (2005)
   PUBMED   16141072
REFERENCE   7
  AUTHORS   Katayama,S., Tomaru,Y., Kasukawa,T., Waki,K., Nakanishi,M.,
            Nakamura,M., Nishida,H., Yap,C.C., Suzuki,M., Kawai,J., Suzuki,H.,
            Carninci,P., Hayashizaki,Y., Wells,C., Frith,M., Ravasi,T.,
            Pang,K.C., Hallinan,J., Mattick,J., Hume,D.A., Lipovich,L.,
            Batalov,S., Engstrom,P.G., Mizuno,Y., Faghihi,M.A., Sandelin,A.,
            Chalk,A.M., Mottagui-Tabar,S., Liang,Z., Lenhard,B. and
            Wahlestedt,C.
  CONSRTM   RIKEN Genome Exploration Research Group; Genome Science Group
            (Genome Network Project Core Group); FANTOM Consortium
  TITLE     Antisense transcription in the mammalian transcriptome
  JOURNAL   Science 309 (5740), 1564-1566 (2005)
   PUBMED   16141073
REFERENCE   8  (bases 1 to 3731)
  AUTHORS   Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H., Carninci,P.,
            Fukuda,S., Furuno,M., Hanagaki,T., Hara,A., Hashizume,W.,
            Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hirozane,T.,
            Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kasukawa,T.,
            Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
            Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
            Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M., Ohsato,N.,
            Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N.,
            Sano,H., Sasaki,D., Shibata,K., Shinagawa,A., Shiraki,T.,
            Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
            Takeda,Y., Tanaka,T., Tomaru,A., Toya,T., Yasunishi,A.,
            Muramatsu,M. and Hayashizaki,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-JUL-2001) Contact:Yoshihide Hayashizaki The Institute
            of Physical and Chemical Research (RIKEN), Omics Science Center,
            RIKEN Yokohama Institute; 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama,
            Kanagawa 230-0045, Japan URL :http://www.osc.riken.jp/
COMMENT     cDNA library was prepared and sequenced in Mouse Genome
            Encyclopedia Project of Genome Exploration Research Group in Riken
            Genomic Sciences Center and Genome Science Laboratory in RIKEN.
            Division of Experimental Animal Research in Riken contributed to
            prepare mouse tissues.
            
            Please visit our web site for further details.
            URL:http://www.osc.riken.jp/
            URL:http://fantom.gsc.riken.jp/
            
            clone information is available at:
            http://fantom.gsc.riken.jp/3/db/annotate/
            main.cgi?masterid=A830089E20.
FEATURES             Location/Qualifiers
     source          1..3731
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="FANTOM_DB:A830089E20"
                     /db_xref="MGI:MGI:2409385"
                     /db_xref="taxon:10090"
                     /clone="A830089E20"
                     /tissue_type="cortex"
                     /clone_lib="RIKEN full-length enriched mouse cDNA library"
                     /dev_stage="10 days neonate"
     misc_feature    1..3731
                     /note="putative;
                     unclassifiable"
ORIGIN      
        1 tttttttttt tttttttttt ttataaggac aacatttaat cggggctggc ttacaggttc
       61 agagtttcag tcaaatatca ttaaggaggg agcatggcag tgtccaggcc agcatggccc
      121 aggaggatct gagagttcga catcttgatc tgaaggcaaa cagaagactg tctcatgggc
      181 agtaggagaa gggtctcaaa gtccacaccc acagtgagac acatacgtca acatctatgc
      241 cacatctcca aataatgcca cttcctgggc caagcatatt caaaccactg aaaatggcat
      301 tcctatacag atgcaaagca catctggggg gtggtgctcc ctgatggggc tgaaagctga
      361 gaaggaaagt gatgttcctt gatatacttg tcctcaaata gcttcatctg tgcagtgcac
      421 tgcagcatca cttttttgag cttcatctgt gcagtgcact gcagcatcac tggattgagc
      481 ttcatctatg cagtgcactg catcatcact ggattgagct tcatctgtgc agtgcactgc
      541 agcatcactg gattgagctt catctgtgca gtacactgca gcatcactgg attgagcttc
      601 atctgtgcag tgcactgcag tatcactgga ttgagcttca tttatgcaat gcatggcagc
      661 ttcactggaa ctcttgagta ctactgtacc ctcggtgggt atgaacagca cattgcgaag
      721 tggcctcagt gggtcatacc caataggtct gtgcttcagt ctgaatgcaa ctcatgatat
      781 gcttgtaacc aagagagtat gttacaagtg atcagttgtt actctcctga tctggttaca
      841 tgctaagtta ctctcggggt tacattgtat tttgctcttt agacttttca ctaggagact
      901 gaagagattg ctcagtggtt gagagcacca gttgctcttg aagagtacct aggtttggtt
      961 cctagcactt gggagaactt tcatgtgtga tatctgatta atttatctct gacagcaaaa
     1021 taaaacatag tgatcgatgt ttccaattga tcttggttcc tgctgggtgg cgttagtgca
     1081 cactaatcag agctgatttt aacctctgat aactctatga agcacagttt taataactgc
     1141 tttatttgga taagtgtctt ttctgattga tttgcagtca gactgcaaag atgcacaagt
     1201 aggacagaaa gagacattag ggaaaaacca cttatagcat ggatcataag aggacatagt
     1261 gggtcatctc cacattctcg cttgatgatg cctcttttgg gtgtgcatac ttgatagcac
     1321 caacaacacc tctccctctc ttctttcaca gtaaagagta aaggatggat tagaatatag
     1381 aatgaagttt tagatgacac aagagtacta atcatatttt atttaatatg ccatgatacc
     1441 cattagacac cacagataaa caaacctcta agtagagccc accagctact ttaatcgcca
     1501 tacttttgct tgctatgttt tactgagaca gattctcaca ctctaggcca gcttggcctg
     1561 gacctaactg ggtatactaa gctaatcctt tggcttgcca agcgctggta agaataacta
     1621 tgcatattgt catatgttat aatgaaaaac atttatagtt atgcgttcaa tccttatatt
     1681 ttgattaaga gtcatcttca tataaaacat tgagcccttg aagttgacta tgtgcccaaa
     1741 taacaaaata gccaacttag ttggcatagg tctactgtat aatattcgaa taacaaaaaa
     1801 aaaaaatcca acaacatatt tctcagagta tgtccctgct ttttttttct tggaatctaa
     1861 acaccttatc attacagtga gatatttagt gccacacctg gacatccatg ttttccaagc
     1921 cacaaatgca ttggcttatt tgttccacat tatgctaaca ttcatcagaa agaaattttg
     1981 gatagagatc agttgaatct tatgtggtag gcatcatcaa gaagccagca tacatgtccc
     2041 tacaagaatg atgctacagt tgggcaggtc aggcttttgg gggcttttag agcactgttc
     2101 ttcttcttct tttaagagtt aaatacatac ataaaccaca gtaaatgcct ttcagcgata
     2161 aaaggcagcc tccttgacgt agggaatgct aattaaaata gcatcatcaa gaatagacag
     2221 ttgagtcctg gtgtatagcc attgtctgta agagaacagt gaatacaaac tgaaacacag
     2281 gtgagtcttg tttctgagac agtgatagaa ttttgccagt gtttaaacat aatcatatgc
     2341 ccagttatat aaacctacgt ataaaaccat ttaataggtt tgagaagaca acccccatat
     2401 taacgggaag taaaacattg ctaattaact ccaatcttga gaaagggaga agagtgaaag
     2461 catgtataca actggaattg ttgctttaaa aatgatcgta cccacttcat gacaagtcag
     2521 ttttacttaa atcaggactg tccaacaaaa acattgttag ccattcatga tctgaatttg
     2581 ttgtatgaat taattatggt atacattaaa agccatggga catttatttt gtaataaata
     2641 aggcagtgga cttacacact agtagccttt ttaagataag ctataaggcc tgccttttct
     2701 cccttcttga ttccagagaa gatcattttt gttccagggg tgtacttttt gggattctcc
     2761 aaatactcta tcagggtatc ctctctccag gtgatgcctt ttttcttgtt ggcatctgtg
     2821 taagagaatc tagcagccta acctgtcttc tatacaaaca gaccctggag atttagtcca
     2881 gtcttatgct tgcctccatt ttccacagtg tagcactggg catacttctg aacaaaaatc
     2941 ttcttgcctt tttcaacatc atccatttgt aattagctct gggctggtca acaccacaaa
     3001 tgttcagact cgaagacaga tatccagctc tctccaatgt tcttataaga aaaacttctg
     3061 agccaggcac ggtggcacat gcctctgcct cccaagtgcc gggattaaag gcgtgtgcca
     3121 ccaccgccgg gcgtacccag ctgttttatg tgggtgctgg ggagctgaac tcaggtcctc
     3181 aagatcccat aggaagtgtt cttattcact gagctatctc tccaccacca aattagattt
     3241 ttttttttcc attttacttt ttatgtgtgt gggtgttcgg cctatctatg cctgtgacca
     3301 gttttgccgt acctgtagag gcaagaagag ggcatcagat ttcttccccc tggagcagaa
     3361 gttacaaggg gttgcaagct gctttgtatg gactaaactt gggtcctctg taagagcaac
     3421 aagtgctttt aaccactaag ctatctcttc ctgcctaaag gcctgtattt cccactaacc
     3481 ctcaccacta agtacccata gtcaacatca ggaaaatagg actaaatata ctttgacttg
     3541 actaagttaa aacaattcct tgacaatgaa tcactggtac aaaacagggg ttataactta
     3601 tgcttagtta acagcagtag gtaatactgg ctgtgtttta ctttgcaaat actccccagg
     3661 ctctcacacg ctttatccta atgtatgtaa gactcttaga caacctcgtc ataggaaagg
     3721 atatgatttt t
//
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