LOCUS AK044091 3731 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus 10 days neonate cortex cDNA, RIKEN full-length
enriched library, clone:A830089E20 product:unclassifiable, full
insert sequence.
ACCESSION AK044091
VERSION AK044091.1
KEYWORDS HTC; HTC_FLI; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
PUBMED 10349636
REFERENCE 2
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10 (10), 1617-1630 (2000)
PUBMED 11042159
REFERENCE 3
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N., Carninci,P.,
Konno,H., Akiyama,J., Nishi,K., Kitsunai,T., Tashiro,H., Itoh,M.,
Sumi,N., Ishii,Y., Nakamura,S., Hazama,M., Nishine,T., Harada,A.,
Yamamoto,R., Matsumoto,H., Sakaguchi,S., Ikegami,T., Kashiwagi,K.,
Fujiwake,S., Inoue,K., Togawa,Y., Izawa,M., Ohara,E., Watahiki,M.,
Yoneda,Y., Ishikawa,T., Ozawa,K., Tanaka,T., Matsuura,S., Kawai,J.,
Okazaki,Y., Muramatsu,M., Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system--384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10 (11), 1757-1771 (2000)
PUBMED 11076861
REFERENCE 4
AUTHORS Kawai,J., Shinagawa,A., Shibata,K., Yoshino,M., Itoh,M., Ishii,Y.,
Arakawa,T., Hara,A., Fukunishi,Y., Konno,H., Adachi,J., Fukuda,S.,
Aizawa,K., Izawa,M., Nishi,K., Kiyosawa,H., Kondo,S., Yamanaka,I.,
Saito,T., Okazaki,Y., Gojobori,T., Bono,H., Kasukawa,T., Saito,R.,
Kadota,K., Matsuda,H., Ashburner,M., Batalov,S., Casavant,T.,
Fleischmann,W., Gaasterland,T., Gissi,C., King,B., Kochiwa,H.,
Kuehl,P., Lewis,S., Matsuo,Y., Nikaido,I., Pesole,G.,
Quackenbush,J., Schriml,L.M., Staubli,F., Suzuki,R., Tomita,M.,
Wagner,L., Washio,T., Sakai,K., Okido,T., Furuno,M., Aono,H.,
Baldarelli,R., Barsh,G., Blake,J., Boffelli,D., Bojunga,N.,
Carninci,P., de Bonaldo,M.F., Brownstein,M.J., Bult,C.,
Fletcher,C., Fujita,M., Gariboldi,M., Gustincich,S., Hill,D.,
Hofmann,M., Hume,D.A., Kamiya,M., Lee,N.H., Lyons,P.,
Marchionni,L., Mashima,J., Mazzarelli,J., Mombaerts,P., Nordone,P.,
Ring,B., Ringwald,M., Rodriguez,I., Sakamoto,N., Sasaki,H.,
Sato,K., Schonbach,C., Seya,T., Shibata,Y., Storch,K.F., Suzuki,H.,
Toyo-oka,K., Wang,K.H., Weitz,C., Whittaker,C., Wilming,L.,
Wynshaw-Boris,A., Yoshida,K., Hasegawa,Y., Kawaji,H., Kohtsuki,S.
and Hayashizaki,Y.
CONSRTM RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409 (6821), 685-690 (2001)
PUBMED 11217851
REFERENCE 5
AUTHORS Okazaki,Y., Furuno,M., Kasukawa,T., Adachi,J., Bono,H., Kondo,S.,
Nikaido,I., Osato,N., Saito,R., Suzuki,H., Yamanaka,I.,
Kiyosawa,H., Yagi,K., Tomaru,Y., Hasegawa,Y., Nogami,A.,
Schonbach,C., Gojobori,T., Baldarelli,R., Hill,D.P., Bult,C.,
Hume,D.A., Quackenbush,J., Schriml,L.M., Kanapin,A., Matsuda,H.,
Batalov,S., Beisel,K.W., Blake,J.A., Bradt,D., Brusic,V.,
Chothia,C., Corbani,L.E., Cousins,S., Dalla,E., Dragani,T.A.,
Fletcher,C.F., Forrest,A., Frazer,K.S., Gaasterland,T.,
Gariboldi,M., Gissi,C., Godzik,A., Gough,J., Grimmond,S.,
Gustincich,S., Hirokawa,N., Jackson,I.J., Jarvis,E.D., Kanai,A.,
Kawaji,H., Kawasawa,Y., Kedzierski,R.M., King,B.L., Konagaya,A.,
Kurochkin,I.V., Lee,Y., Lenhard,B., Lyons,P.A., Maglott,D.R.,
Maltais,L., Marchionni,L., McKenzie,L., Miki,H., Nagashima,T.,
Numata,K., Okido,T., Pavan,W.J., Pertea,G., Pesole,G.,
Petrovsky,N., Pillai,R., Pontius,J.U., Qi,D., Ramachandran,S.,
Ravasi,T., Reed,J.C., Reed,D.J., Reid,J., Ring,B.Z., Ringwald,M.,
Sandelin,A., Schneider,C., Semple,C.A., Setou,M., Shimada,K.,
Sultana,R., Takenaka,Y., Taylor,M.S., Teasdale,R.D., Tomita,M.,
Verardo,R., Wagner,L., Wahlestedt,C., Wang,Y., Watanabe,Y.,
Wells,C., Wilming,L.G., Wynshaw-Boris,A., Yanagisawa,M., Yang,I.,
Yang,L., Yuan,Z., Zavolan,M., Zhu,Y., Zimmer,A., Carninci,P.,
Hayatsu,N., Hirozane-Kishikawa,T., Konno,H., Nakamura,M.,
Sakazume,N., Sato,K., Shiraki,T., Waki,K., Kawai,J., Aizawa,K.,
Arakawa,T., Fukuda,S., Hara,A., Hashizume,W., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Miyazaki,A., Sakai,K., Sasaki,D., Shibata,K.,
Shinagawa,A., Yasunishi,A., Yoshino,M., Waterston,R., Lander,E.S.,
Rogers,J., Birney,E. and Hayashizaki,Y.
CONSRTM FANTOM Consortium; RIKEN Genome Exploration Research Group Phase I
& II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420 (6915), 563-573 (2002)
PUBMED 12466851
REFERENCE 6
AUTHORS Carninci,P., Kasukawa,T., Katayama,S., Gough,J., Frith,M.C.,
Maeda,N., Oyama,R., Ravasi,T., Lenhard,B., Wells,C., Kodzius,R.,
Shimokawa,K., Bajic,V.B., Brenner,S.E., Batalov,S., Forrest,A.R.,
Zavolan,M., Davis,M.J., Wilming,L.G., Aidinis,V., Allen,J.E.,
Ambesi-Impiombato,A., Apweiler,R., Aturaliya,R.N., Bailey,T.L.,
Bansal,M., Baxter,L., Beisel,K.W., Bersano,T., Bono,H., Chalk,A.M.,
Chiu,K.P., Choudhary,V., Christoffels,A., Clutterbuck,D.R.,
Crowe,M.L., Dalla,E., Dalrymple,B.P., de Bono,B., Della Gatta,G.,
di Bernardo,D., Down,T., Engstrom,P., Fagiolini,M., Faulkner,G.,
Fletcher,C.F., Fukushima,T., Furuno,M., Futaki,S., Gariboldi,M.,
Georgii-Hemming,P., Gingeras,T.R., Gojobori,T., Green,R.E.,
Gustincich,S., Harbers,M., Hayashi,Y., Hensch,T.K., Hirokawa,N.,
Hill,D., Huminiecki,L., Iacono,M., Ikeo,K., Iwama,A., Ishikawa,T.,
Jakt,M., Kanapin,A., Katoh,M., Kawasawa,Y., Kelso,J., Kitamura,H.,
Kitano,H., Kollias,G., Krishnan,S.P., Kruger,A., Kummerfeld,S.K.,
Kurochkin,I.V., Lareau,L.F., Lazarevic,D., Lipovich,L., Liu,J.,
Liuni,S., McWilliam,S., Madan Babu,M., Madera,M., Marchionni,L.,
Matsuda,H., Matsuzawa,S., Miki,H., Mignone,F., Miyake,S.,
Morris,K., Mottagui-Tabar,S., Mulder,N., Nakano,N., Nakauchi,H.,
Ng,P., Nilsson,R., Nishiguchi,S., Nishikawa,S., Nori,F., Ohara,O.,
Okazaki,Y., Orlando,V., Pang,K.C., Pavan,W.J., Pavesi,G.,
Pesole,G., Petrovsky,N., Piazza,S., Reed,J., Reid,J.F., Ring,B.Z.,
Ringwald,M., Rost,B., Ruan,Y., Salzberg,S.L., Sandelin,A.,
Schneider,C., Schonbach,C., Sekiguchi,K., Semple,C.A., Seno,S.,
Sessa,L., Sheng,Y., Shibata,Y., Shimada,H., Shimada,K., Silva,D.,
Sinclair,B., Sperling,S., Stupka,E., Sugiura,K., Sultana,R.,
Takenaka,Y., Taki,K., Tammoja,K., Tan,S.L., Tang,S., Taylor,M.S.,
Tegner,J., Teichmann,S.A., Ueda,H.R., van Nimwegen,E., Verardo,R.,
Wei,C.L., Yagi,K., Yamanishi,H., Zabarovsky,E., Zhu,S., Zimmer,A.,
Hide,W., Bult,C., Grimmond,S.M., Teasdale,R.D., Liu,E.T.,
Brusic,V., Quackenbush,J., Wahlestedt,C., Mattick,J.S., Hume,D.A.,
Kai,C., Sasaki,D., Tomaru,Y., Fukuda,S., Kanamori-Katayama,M.,
Suzuki,M., Aoki,J., Arakawa,T., Iida,J., Imamura,K., Itoh,M.,
Kato,T., Kawaji,H., Kawagashira,N., Kawashima,T., Kojima,M.,
Kondo,S., Konno,H., Nakano,K., Ninomiya,N., Nishio,T., Okada,M.,
Plessy,C., Shibata,K., Shiraki,T., Suzuki,S., Tagami,M., Waki,K.,
Watahiki,A., Okamura-Oho,Y., Suzuki,H., Kawai,J. and Hayashizaki,Y.
CONSRTM FANTOM Consortium; RIKEN Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The transcriptional landscape of the mammalian genome
JOURNAL Science 309 (5740), 1559-1563 (2005)
PUBMED 16141072
REFERENCE 7
AUTHORS Katayama,S., Tomaru,Y., Kasukawa,T., Waki,K., Nakanishi,M.,
Nakamura,M., Nishida,H., Yap,C.C., Suzuki,M., Kawai,J., Suzuki,H.,
Carninci,P., Hayashizaki,Y., Wells,C., Frith,M., Ravasi,T.,
Pang,K.C., Hallinan,J., Mattick,J., Hume,D.A., Lipovich,L.,
Batalov,S., Engstrom,P.G., Mizuno,Y., Faghihi,M.A., Sandelin,A.,
Chalk,A.M., Mottagui-Tabar,S., Liang,Z., Lenhard,B. and
Wahlestedt,C.
CONSRTM RIKEN Genome Exploration Research Group; Genome Science Group
(Genome Network Project Core Group); FANTOM Consortium
TITLE Antisense transcription in the mammalian transcriptome
JOURNAL Science 309 (5740), 1564-1566 (2005)
PUBMED 16141073
REFERENCE 8 (bases 1 to 3731)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H., Carninci,P.,
Fukuda,S., Furuno,M., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hirozane,T.,
Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kasukawa,T.,
Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M., Ohsato,N.,
Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N.,
Sano,H., Sasaki,D., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Takeda,Y., Tanaka,T., Tomaru,A., Toya,T., Yasunishi,A.,
Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (16-JUL-2001) Contact:Yoshihide Hayashizaki The Institute
of Physical and Chemical Research (RIKEN), Omics Science Center,
RIKEN Yokohama Institute; 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama,
Kanagawa 230-0045, Japan URL :http://www.osc.riken.jp/
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=A830089E20.
FEATURES Location/Qualifiers
source 1..3731
/organism="Mus musculus"
/mol_type="mRNA"
/strain="C57BL/6J"
/db_xref="FANTOM_DB:A830089E20"
/db_xref="MGI:MGI:2409385"
/db_xref="taxon:10090"
/clone="A830089E20"
/tissue_type="cortex"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/dev_stage="10 days neonate"
misc_feature 1..3731
/note="putative;
unclassifiable"
ORIGIN
1 tttttttttt tttttttttt ttataaggac aacatttaat cggggctggc ttacaggttc
61 agagtttcag tcaaatatca ttaaggaggg agcatggcag tgtccaggcc agcatggccc
121 aggaggatct gagagttcga catcttgatc tgaaggcaaa cagaagactg tctcatgggc
181 agtaggagaa gggtctcaaa gtccacaccc acagtgagac acatacgtca acatctatgc
241 cacatctcca aataatgcca cttcctgggc caagcatatt caaaccactg aaaatggcat
301 tcctatacag atgcaaagca catctggggg gtggtgctcc ctgatggggc tgaaagctga
361 gaaggaaagt gatgttcctt gatatacttg tcctcaaata gcttcatctg tgcagtgcac
421 tgcagcatca cttttttgag cttcatctgt gcagtgcact gcagcatcac tggattgagc
481 ttcatctatg cagtgcactg catcatcact ggattgagct tcatctgtgc agtgcactgc
541 agcatcactg gattgagctt catctgtgca gtacactgca gcatcactgg attgagcttc
601 atctgtgcag tgcactgcag tatcactgga ttgagcttca tttatgcaat gcatggcagc
661 ttcactggaa ctcttgagta ctactgtacc ctcggtgggt atgaacagca cattgcgaag
721 tggcctcagt gggtcatacc caataggtct gtgcttcagt ctgaatgcaa ctcatgatat
781 gcttgtaacc aagagagtat gttacaagtg atcagttgtt actctcctga tctggttaca
841 tgctaagtta ctctcggggt tacattgtat tttgctcttt agacttttca ctaggagact
901 gaagagattg ctcagtggtt gagagcacca gttgctcttg aagagtacct aggtttggtt
961 cctagcactt gggagaactt tcatgtgtga tatctgatta atttatctct gacagcaaaa
1021 taaaacatag tgatcgatgt ttccaattga tcttggttcc tgctgggtgg cgttagtgca
1081 cactaatcag agctgatttt aacctctgat aactctatga agcacagttt taataactgc
1141 tttatttgga taagtgtctt ttctgattga tttgcagtca gactgcaaag atgcacaagt
1201 aggacagaaa gagacattag ggaaaaacca cttatagcat ggatcataag aggacatagt
1261 gggtcatctc cacattctcg cttgatgatg cctcttttgg gtgtgcatac ttgatagcac
1321 caacaacacc tctccctctc ttctttcaca gtaaagagta aaggatggat tagaatatag
1381 aatgaagttt tagatgacac aagagtacta atcatatttt atttaatatg ccatgatacc
1441 cattagacac cacagataaa caaacctcta agtagagccc accagctact ttaatcgcca
1501 tacttttgct tgctatgttt tactgagaca gattctcaca ctctaggcca gcttggcctg
1561 gacctaactg ggtatactaa gctaatcctt tggcttgcca agcgctggta agaataacta
1621 tgcatattgt catatgttat aatgaaaaac atttatagtt atgcgttcaa tccttatatt
1681 ttgattaaga gtcatcttca tataaaacat tgagcccttg aagttgacta tgtgcccaaa
1741 taacaaaata gccaacttag ttggcatagg tctactgtat aatattcgaa taacaaaaaa
1801 aaaaaatcca acaacatatt tctcagagta tgtccctgct ttttttttct tggaatctaa
1861 acaccttatc attacagtga gatatttagt gccacacctg gacatccatg ttttccaagc
1921 cacaaatgca ttggcttatt tgttccacat tatgctaaca ttcatcagaa agaaattttg
1981 gatagagatc agttgaatct tatgtggtag gcatcatcaa gaagccagca tacatgtccc
2041 tacaagaatg atgctacagt tgggcaggtc aggcttttgg gggcttttag agcactgttc
2101 ttcttcttct tttaagagtt aaatacatac ataaaccaca gtaaatgcct ttcagcgata
2161 aaaggcagcc tccttgacgt agggaatgct aattaaaata gcatcatcaa gaatagacag
2221 ttgagtcctg gtgtatagcc attgtctgta agagaacagt gaatacaaac tgaaacacag
2281 gtgagtcttg tttctgagac agtgatagaa ttttgccagt gtttaaacat aatcatatgc
2341 ccagttatat aaacctacgt ataaaaccat ttaataggtt tgagaagaca acccccatat
2401 taacgggaag taaaacattg ctaattaact ccaatcttga gaaagggaga agagtgaaag
2461 catgtataca actggaattg ttgctttaaa aatgatcgta cccacttcat gacaagtcag
2521 ttttacttaa atcaggactg tccaacaaaa acattgttag ccattcatga tctgaatttg
2581 ttgtatgaat taattatggt atacattaaa agccatggga catttatttt gtaataaata
2641 aggcagtgga cttacacact agtagccttt ttaagataag ctataaggcc tgccttttct
2701 cccttcttga ttccagagaa gatcattttt gttccagggg tgtacttttt gggattctcc
2761 aaatactcta tcagggtatc ctctctccag gtgatgcctt ttttcttgtt ggcatctgtg
2821 taagagaatc tagcagccta acctgtcttc tatacaaaca gaccctggag atttagtcca
2881 gtcttatgct tgcctccatt ttccacagtg tagcactggg catacttctg aacaaaaatc
2941 ttcttgcctt tttcaacatc atccatttgt aattagctct gggctggtca acaccacaaa
3001 tgttcagact cgaagacaga tatccagctc tctccaatgt tcttataaga aaaacttctg
3061 agccaggcac ggtggcacat gcctctgcct cccaagtgcc gggattaaag gcgtgtgcca
3121 ccaccgccgg gcgtacccag ctgttttatg tgggtgctgg ggagctgaac tcaggtcctc
3181 aagatcccat aggaagtgtt cttattcact gagctatctc tccaccacca aattagattt
3241 ttttttttcc attttacttt ttatgtgtgt gggtgttcgg cctatctatg cctgtgacca
3301 gttttgccgt acctgtagag gcaagaagag ggcatcagat ttcttccccc tggagcagaa
3361 gttacaaggg gttgcaagct gctttgtatg gactaaactt gggtcctctg taagagcaac
3421 aagtgctttt aaccactaag ctatctcttc ctgcctaaag gcctgtattt cccactaacc
3481 ctcaccacta agtacccata gtcaacatca ggaaaatagg actaaatata ctttgacttg
3541 actaagttaa aacaattcct tgacaatgaa tcactggtac aaaacagggg ttataactta
3601 tgcttagtta acagcagtag gtaatactgg ctgtgtttta ctttgcaaat actccccagg
3661 ctctcacacg ctttatccta atgtatgtaa gactcttaga caacctcgtc ataggaaagg
3721 atatgatttt t
//