U.S. flag

An official website of the United States government

Mus musculus 16 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A130098P13 product:CDNA FLJ10678 FIS, CLONE NT2RP2006472 homolog [Homo sapiens], full insert sequence

GenBank: AK038364.1

FASTA Graphics 

LOCUS       AK038364                4233 bp    mRNA    linear   HTC 06-OCT-2010
DEFINITION  Mus musculus 16 days neonate thymus cDNA, RIKEN full-length
            enriched library, clone:A130098P13 product:CDNA FLJ10678 FIS, CLONE
            NT2RP2006472 homolog [Homo sapiens], full insert sequence.
ACCESSION   AK038364
VERSION     AK038364.1
KEYWORDS    HTC; HTC_FLI; CAP trapper.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1
  AUTHORS   Carninci,P. and Hayashizaki,Y.
  TITLE     High-efficiency full-length cDNA cloning
  JOURNAL   Meth. Enzymol. 303, 19-44 (1999)
   PUBMED   10349636
REFERENCE   2
  AUTHORS   Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
            Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
  TITLE     Normalization and subtraction of cap-trapper-selected cDNAs to
            prepare full-length cDNA libraries for rapid discovery of new genes
  JOURNAL   Genome Res. 10 (10), 1617-1630 (2000)
   PUBMED   11042159
REFERENCE   3
  AUTHORS   Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N., Carninci,P.,
            Konno,H., Akiyama,J., Nishi,K., Kitsunai,T., Tashiro,H., Itoh,M.,
            Sumi,N., Ishii,Y., Nakamura,S., Hazama,M., Nishine,T., Harada,A.,
            Yamamoto,R., Matsumoto,H., Sakaguchi,S., Ikegami,T., Kashiwagi,K.,
            Fujiwake,S., Inoue,K., Togawa,Y., Izawa,M., Ohara,E., Watahiki,M.,
            Yoneda,Y., Ishikawa,T., Ozawa,K., Tanaka,T., Matsuura,S., Kawai,J.,
            Okazaki,Y., Muramatsu,M., Inoue,Y., Kira,A. and Hayashizaki,Y.
  TITLE     RIKEN integrated sequence analysis (RISA) system--384-format
            sequencing pipeline with 384 multicapillary sequencer
  JOURNAL   Genome Res. 10 (11), 1757-1771 (2000)
   PUBMED   11076861
REFERENCE   4
  AUTHORS   Kawai,J., Shinagawa,A., Shibata,K., Yoshino,M., Itoh,M., Ishii,Y.,
            Arakawa,T., Hara,A., Fukunishi,Y., Konno,H., Adachi,J., Fukuda,S.,
            Aizawa,K., Izawa,M., Nishi,K., Kiyosawa,H., Kondo,S., Yamanaka,I.,
            Saito,T., Okazaki,Y., Gojobori,T., Bono,H., Kasukawa,T., Saito,R.,
            Kadota,K., Matsuda,H., Ashburner,M., Batalov,S., Casavant,T.,
            Fleischmann,W., Gaasterland,T., Gissi,C., King,B., Kochiwa,H.,
            Kuehl,P., Lewis,S., Matsuo,Y., Nikaido,I., Pesole,G.,
            Quackenbush,J., Schriml,L.M., Staubli,F., Suzuki,R., Tomita,M.,
            Wagner,L., Washio,T., Sakai,K., Okido,T., Furuno,M., Aono,H.,
            Baldarelli,R., Barsh,G., Blake,J., Boffelli,D., Bojunga,N.,
            Carninci,P., de Bonaldo,M.F., Brownstein,M.J., Bult,C.,
            Fletcher,C., Fujita,M., Gariboldi,M., Gustincich,S., Hill,D.,
            Hofmann,M., Hume,D.A., Kamiya,M., Lee,N.H., Lyons,P.,
            Marchionni,L., Mashima,J., Mazzarelli,J., Mombaerts,P., Nordone,P.,
            Ring,B., Ringwald,M., Rodriguez,I., Sakamoto,N., Sasaki,H.,
            Sato,K., Schonbach,C., Seya,T., Shibata,Y., Storch,K.F., Suzuki,H.,
            Toyo-oka,K., Wang,K.H., Weitz,C., Whittaker,C., Wilming,L.,
            Wynshaw-Boris,A., Yoshida,K., Hasegawa,Y., Kawaji,H., Kohtsuki,S.
            and Hayashizaki,Y.
  CONSRTM   RIKEN Genome Exploration Research Group Phase II Team and the
            FANTOM Consortium
  TITLE     Functional annotation of a full-length mouse cDNA collection
  JOURNAL   Nature 409 (6821), 685-690 (2001)
   PUBMED   11217851
REFERENCE   5
  AUTHORS   Okazaki,Y., Furuno,M., Kasukawa,T., Adachi,J., Bono,H., Kondo,S.,
            Nikaido,I., Osato,N., Saito,R., Suzuki,H., Yamanaka,I.,
            Kiyosawa,H., Yagi,K., Tomaru,Y., Hasegawa,Y., Nogami,A.,
            Schonbach,C., Gojobori,T., Baldarelli,R., Hill,D.P., Bult,C.,
            Hume,D.A., Quackenbush,J., Schriml,L.M., Kanapin,A., Matsuda,H.,
            Batalov,S., Beisel,K.W., Blake,J.A., Bradt,D., Brusic,V.,
            Chothia,C., Corbani,L.E., Cousins,S., Dalla,E., Dragani,T.A.,
            Fletcher,C.F., Forrest,A., Frazer,K.S., Gaasterland,T.,
            Gariboldi,M., Gissi,C., Godzik,A., Gough,J., Grimmond,S.,
            Gustincich,S., Hirokawa,N., Jackson,I.J., Jarvis,E.D., Kanai,A.,
            Kawaji,H., Kawasawa,Y., Kedzierski,R.M., King,B.L., Konagaya,A.,
            Kurochkin,I.V., Lee,Y., Lenhard,B., Lyons,P.A., Maglott,D.R.,
            Maltais,L., Marchionni,L., McKenzie,L., Miki,H., Nagashima,T.,
            Numata,K., Okido,T., Pavan,W.J., Pertea,G., Pesole,G.,
            Petrovsky,N., Pillai,R., Pontius,J.U., Qi,D., Ramachandran,S.,
            Ravasi,T., Reed,J.C., Reed,D.J., Reid,J., Ring,B.Z., Ringwald,M.,
            Sandelin,A., Schneider,C., Semple,C.A., Setou,M., Shimada,K.,
            Sultana,R., Takenaka,Y., Taylor,M.S., Teasdale,R.D., Tomita,M.,
            Verardo,R., Wagner,L., Wahlestedt,C., Wang,Y., Watanabe,Y.,
            Wells,C., Wilming,L.G., Wynshaw-Boris,A., Yanagisawa,M., Yang,I.,
            Yang,L., Yuan,Z., Zavolan,M., Zhu,Y., Zimmer,A., Carninci,P.,
            Hayatsu,N., Hirozane-Kishikawa,T., Konno,H., Nakamura,M.,
            Sakazume,N., Sato,K., Shiraki,T., Waki,K., Kawai,J., Aizawa,K.,
            Arakawa,T., Fukuda,S., Hara,A., Hashizume,W., Imotani,K., Ishii,Y.,
            Itoh,M., Kagawa,I., Miyazaki,A., Sakai,K., Sasaki,D., Shibata,K.,
            Shinagawa,A., Yasunishi,A., Yoshino,M., Waterston,R., Lander,E.S.,
            Rogers,J., Birney,E. and Hayashizaki,Y.
  CONSRTM   FANTOM Consortium; RIKEN Genome Exploration Research Group Phase I
            & II Team
  TITLE     Analysis of the mouse transcriptome based on functional annotation
            of 60,770 full-length cDNAs
  JOURNAL   Nature 420 (6915), 563-573 (2002)
   PUBMED   12466851
REFERENCE   6
  AUTHORS   Carninci,P., Kasukawa,T., Katayama,S., Gough,J., Frith,M.C.,
            Maeda,N., Oyama,R., Ravasi,T., Lenhard,B., Wells,C., Kodzius,R.,
            Shimokawa,K., Bajic,V.B., Brenner,S.E., Batalov,S., Forrest,A.R.,
            Zavolan,M., Davis,M.J., Wilming,L.G., Aidinis,V., Allen,J.E.,
            Ambesi-Impiombato,A., Apweiler,R., Aturaliya,R.N., Bailey,T.L.,
            Bansal,M., Baxter,L., Beisel,K.W., Bersano,T., Bono,H., Chalk,A.M.,
            Chiu,K.P., Choudhary,V., Christoffels,A., Clutterbuck,D.R.,
            Crowe,M.L., Dalla,E., Dalrymple,B.P., de Bono,B., Della Gatta,G.,
            di Bernardo,D., Down,T., Engstrom,P., Fagiolini,M., Faulkner,G.,
            Fletcher,C.F., Fukushima,T., Furuno,M., Futaki,S., Gariboldi,M.,
            Georgii-Hemming,P., Gingeras,T.R., Gojobori,T., Green,R.E.,
            Gustincich,S., Harbers,M., Hayashi,Y., Hensch,T.K., Hirokawa,N.,
            Hill,D., Huminiecki,L., Iacono,M., Ikeo,K., Iwama,A., Ishikawa,T.,
            Jakt,M., Kanapin,A., Katoh,M., Kawasawa,Y., Kelso,J., Kitamura,H.,
            Kitano,H., Kollias,G., Krishnan,S.P., Kruger,A., Kummerfeld,S.K.,
            Kurochkin,I.V., Lareau,L.F., Lazarevic,D., Lipovich,L., Liu,J.,
            Liuni,S., McWilliam,S., Madan Babu,M., Madera,M., Marchionni,L.,
            Matsuda,H., Matsuzawa,S., Miki,H., Mignone,F., Miyake,S.,
            Morris,K., Mottagui-Tabar,S., Mulder,N., Nakano,N., Nakauchi,H.,
            Ng,P., Nilsson,R., Nishiguchi,S., Nishikawa,S., Nori,F., Ohara,O.,
            Okazaki,Y., Orlando,V., Pang,K.C., Pavan,W.J., Pavesi,G.,
            Pesole,G., Petrovsky,N., Piazza,S., Reed,J., Reid,J.F., Ring,B.Z.,
            Ringwald,M., Rost,B., Ruan,Y., Salzberg,S.L., Sandelin,A.,
            Schneider,C., Schonbach,C., Sekiguchi,K., Semple,C.A., Seno,S.,
            Sessa,L., Sheng,Y., Shibata,Y., Shimada,H., Shimada,K., Silva,D.,
            Sinclair,B., Sperling,S., Stupka,E., Sugiura,K., Sultana,R.,
            Takenaka,Y., Taki,K., Tammoja,K., Tan,S.L., Tang,S., Taylor,M.S.,
            Tegner,J., Teichmann,S.A., Ueda,H.R., van Nimwegen,E., Verardo,R.,
            Wei,C.L., Yagi,K., Yamanishi,H., Zabarovsky,E., Zhu,S., Zimmer,A.,
            Hide,W., Bult,C., Grimmond,S.M., Teasdale,R.D., Liu,E.T.,
            Brusic,V., Quackenbush,J., Wahlestedt,C., Mattick,J.S., Hume,D.A.,
            Kai,C., Sasaki,D., Tomaru,Y., Fukuda,S., Kanamori-Katayama,M.,
            Suzuki,M., Aoki,J., Arakawa,T., Iida,J., Imamura,K., Itoh,M.,
            Kato,T., Kawaji,H., Kawagashira,N., Kawashima,T., Kojima,M.,
            Kondo,S., Konno,H., Nakano,K., Ninomiya,N., Nishio,T., Okada,M.,
            Plessy,C., Shibata,K., Shiraki,T., Suzuki,S., Tagami,M., Waki,K.,
            Watahiki,A., Okamura-Oho,Y., Suzuki,H., Kawai,J. and Hayashizaki,Y.
  CONSRTM   FANTOM Consortium; RIKEN Genome Exploration Research Group and
            Genome Science Group (Genome Network Project Core Group)
  TITLE     The transcriptional landscape of the mammalian genome
  JOURNAL   Science 309 (5740), 1559-1563 (2005)
   PUBMED   16141072
REFERENCE   7
  AUTHORS   Katayama,S., Tomaru,Y., Kasukawa,T., Waki,K., Nakanishi,M.,
            Nakamura,M., Nishida,H., Yap,C.C., Suzuki,M., Kawai,J., Suzuki,H.,
            Carninci,P., Hayashizaki,Y., Wells,C., Frith,M., Ravasi,T.,
            Pang,K.C., Hallinan,J., Mattick,J., Hume,D.A., Lipovich,L.,
            Batalov,S., Engstrom,P.G., Mizuno,Y., Faghihi,M.A., Sandelin,A.,
            Chalk,A.M., Mottagui-Tabar,S., Liang,Z., Lenhard,B. and
            Wahlestedt,C.
  CONSRTM   RIKEN Genome Exploration Research Group; Genome Science Group
            (Genome Network Project Core Group); FANTOM Consortium
  TITLE     Antisense transcription in the mammalian transcriptome
  JOURNAL   Science 309 (5740), 1564-1566 (2005)
   PUBMED   16141073
REFERENCE   8  (bases 1 to 4233)
  AUTHORS   Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H., Carninci,P.,
            Fukuda,S., Furuno,M., Hanagaki,T., Hara,A., Hashizume,W.,
            Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hirozane,T.,
            Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kasukawa,T.,
            Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
            Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
            Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M., Ohsato,N.,
            Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N.,
            Sano,H., Sasaki,D., Shibata,K., Shinagawa,A., Shiraki,T.,
            Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
            Takeda,Y., Tanaka,T., Tomaru,A., Toya,T., Yasunishi,A.,
            Muramatsu,M. and Hayashizaki,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-JUL-2001) Contact:Yoshihide Hayashizaki The Institute
            of Physical and Chemical Research (RIKEN), Omics Science Center,
            RIKEN Yokohama Institute; 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama,
            Kanagawa 230-0045, Japan URL :http://www.osc.riken.jp/
COMMENT     cDNA library was prepared and sequenced in Mouse Genome
            Encyclopedia Project of Genome Exploration Research Group in Riken
            Genomic Sciences Center and Genome Science Laboratory in RIKEN.
            Division of Experimental Animal Research in Riken contributed to
            prepare mouse tissues.
            
            Please visit our web site for further details.
            URL:http://www.osc.riken.jp/
            URL:http://fantom.gsc.riken.jp/
            
            clone information is available at:
            http://fantom.gsc.riken.jp/3/db/annotate/
            main.cgi?masterid=A130098P13.
FEATURES             Location/Qualifiers
     source          1..4233
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="FANTOM_DB:A130098P13"
                     /db_xref="MGI:MGI:2402780"
                     /db_xref="taxon:10090"
                     /clone="A130098P13"
                     /tissue_type="thymus"
                     /clone_lib="RIKEN full-length enriched mouse cDNA library"
                     /dev_stage="16 days neonate"
     misc_feature    1..4233
                     /note="CDNA FLJ10678 FIS, CLONE NT2RP2006472 homolog [Homo
                     sapiens] (SPTR|Q9NVK3, evidence: FASTY, 92.1%ID,
                     23.3%length, match=495);
                     putative"
ORIGIN      
        1 tttattttca attgagtcat tatttctttt gatattttca gattttactt tcccgtatta
       61 aaaactatac tgtcccagaa gaagaaattg ggtctttctt gtttcatgct attaacaagc
      121 caaatgctcc tgtctggctc attctgaatg aagcaggcct gtactggaga gcagtaggaa
      181 acagcacctt tgctatcgcc tgcctccaga gggctttgaa tttagctcca gttcaatacc
      241 aggacattcc tcttgtcaac ctggccaacc ttttgattca ttacggcctt catcttgatg
      301 ctacaaagtt gctgctgcaa gccgtggctg tcaacagctc tgagcccctg acctttttga
      361 gcctgggaaa tgcttacctt gctctgaaga atgtcagcgg ggcacttgaa gccttcagac
      421 aggccttgaa gctaagcacc aaatgcccag agtgtgagag cagcctgaag ctgatccgct
      481 gcatgcagtt ctacccgttc ctgtacaacg ccacctcttc tgtctgtggc ggtaagcacc
      541 taataaacgc cacaagctca cccggctttg ctgccgtaac ccaagcaaca cagagatggt
      601 ttggggaact tcctccaggg ttttaaaaag ctaaccctag ctgtatagca gagaaatcca
      661 ttcattaatt actggaatta gtagttaacg ttgatttcca gaccttagct aagaaatact
      721 gactaatgta tacagtgaaa ttgtattttc cagagtttgt catgggagta ttttctctcc
      781 cataaatttg tttaaccctg actaataatc acggtaaagg aaattcatga agccgtatgt
      841 gtcatgagca cagccctaca tacttacccc tgaaaacagc tccctgcctt tcagaggagt
      901 gatttcccct tcctgcacct tgtccatagt gatggtatat cacaggggtc ctttctcttt
      961 gtgtgcagct gccttggcag aactggtatg aagcttaaaa gtcacatgaa ccctaatagc
     1021 ctttgcttta aggaaaagat tgtctgtttc acattctgcc tttgatcagc agcctctgga
     1081 gaggtggggg aaggcgcaga tcttctgcac tagccagcgt taggtggagc aacagttttc
     1141 actccactga ttgtccagat tatagtataa ggcattctag ttccttcaat agtgatatca
     1201 aaaactgagc atatctcata cccagttgac atggcttgac ttagataatt tataatagac
     1261 ttaagaccag aaactggttt cctggttcac tttaccagac tgcctcaggg ttttgatgga
     1321 attgggaata agtgtacttg caccaaagcc tgtcagaacc atcatatagg tcagatgcct
     1381 gtcaacattg ggcatgatac aaattagagt tctcatgaat accaaaggcc tggatagtgt
     1441 tttagcaagg ggtagtcaag tggccagcac aagaattaca cagattcttg cctgaccatg
     1501 ctctgccata ctttctgatc ccagaaaagt agcatcattg cctataccat gaacaacaat
     1561 aaaaaccatt gcatacttgc cgaggaaacc aagtgaggta tttatcatag agtgggtaac
     1621 tggataaagg taagacttca gagattgata gtagggccag tgacatggct cagcagggaa
     1681 acgcatgtgc tgccaagccg aaagccatga cgtcaatcct ctgaacccat atagtagaag
     1741 agaaccagct cccacaaatt gccctgtaac ctccacatgt gtaacttggc gtgcgcatgc
     1801 acacattaaa tgaaaatgaa actttaaaga catttattgt aaatgcaaag tattcagagt
     1861 tttcaaagca caagtgttgt tcttactctt acttcaacct agaaaatgtg gtctttggat
     1921 attgctggtt atccaagagg tcacatagca gtgaccttct tctaaatact atttttcttg
     1981 tattaacatt gcatatttgt gctcagtgtt gttgttttga tttgtttcgt ttcttgcact
     2041 ttcttaattc ctatgtcact cgtgtcagca gaaagaatct agttgtgatg acttgcccct
     2101 gagacctaac ttgtacaaga acaaataaca tgagatagat cttcatcaga tgtggagcat
     2161 ctgctggtct agattatctc agtgacatct ttgggtgcac tataactagg aaagaaagca
     2221 atttagctta gaagatggac taccattgtt ctttcagaga gaacttatcc gcaaaacttg
     2281 gacaagattc catttttacc cataagtaac tagctgcata aaccatgaag cctctgcgct
     2341 gcttggcttc catcacagga acaggctctc ctaccagtcc tctaagatgg tgatgtgaat
     2401 gtgacagtgt ctacccagga gcacctccac agtgctccta ggtatgaagc ccagccatct
     2461 catgaagtga ctattactaa tttttcctta gtttaacaaa cccatttcaa gtattttatg
     2521 aaggaagact taaaaggttg aatttttaca cgtttcttat tatttcttta agaattctgt
     2581 aaaatgtatg cttctattca cccatctctt ctcagagcca ctctcccttc cccttcccct
     2641 tcttcccctt ccccttcccc ttccccttcc caacaacttt gtgccctctt ccacatcaag
     2701 gctgcccaca tattctcaga tgtgtcacgt cttccactag agcatggtca gcgtttgaga
     2761 ggccgcactc ttagagctga tgctctctct ctaagcagtt ctctgtatag gaggtggaat
     2821 ttcatgccca cttcccctct tcatgctggg atttggtctg ctttaggctg gcacaaccac
     2881 tgggagttcc gatgtatagc tgcctgctgg gtccagaaga cactgttttc ttgtagtcta
     2941 ctatctctga ctcttactct ctccactccc cttccacaat gatccctgag tctttgaaga
     3001 gggcaataca ttatatgtat ccacttagga ctgacattgt cgagtctttt attctttgtt
     3061 ccttggccag ttgaaggtct ctgtgttggt cattacccat tgtaaacaga agcttctcaa
     3121 atgagggttg agagatgcct tgattgatgt ccacaatgat aaatcattag gagatgattt
     3181 aatatttgca tttaacagga aaatagtaac agattctttt ccagggccta tgacctatct
     3241 aatcatgcgg gttggctttt tgtttttgtt tgtttgtttg tttgtgccca ataatggtgc
     3301 caggaatggg tttcatcttg gggttcaggc cttaaattca atcagaaagg ggtttgttat
     3361 tcccaccaca ttcattgcac tgttgcatca atggtcatgc ctgacagctt agtaaggttg
     3421 atggctgctt ttctcctctc gacacatgca tagccccttc cagcaccact caagccagcc
     3481 agtatggacg atgcttccag gtcagtactg ttctgtgacc agagtgtgta gtgtctgcag
     3541 caatgcaggt gtacaatcaa tgcaccaaga tacatggtta cctaaaaata ttacaccaga
     3601 ttgtagaagt taggagtaaa tagtctagag tcataaacaa atatcagtgt atcttagaat
     3661 tttagaccag tttctatgta atgtgtgttt ggtagccttt gcaatgattt ccaaatcatg
     3721 ttaatgaact ctggatgctc gagatgtaca gatgaatgac cttgtattct tcttatagca
     3781 tttctgtatc tcaccattta caggaatatc tcttttctaa tgcttcattc tctgaggctt
     3841 tagtctgctt tctgcatcag gaatttctgt agatttatgg cttgctgcac acattgttct
     3901 ataatttaga ttttcagaag gagatgttgc atgttgctgc ctcctgcaga ctctgcagca
     3961 tataccacct gcagctgtac ttcactttcc tcacaagaat tgctggggaa gggagtattt
     4021 gtttttaaga tttttataga tccaatttgg ggagaacttc aatatgtaat tatgccatct
     4081 ctgtttattt ccccaaaata atttagaact ttttaaggac tatagttatg gttaccagat
     4141 aatttatttg acatgtatct gtgtgataaa ggaagaataa gaaaaaggtt gtgagcttat
     4201 gtctagaaac aaagattatg atttgcccaa gtc
//
Feature
Display: FASTA GenBank Help
Details

Supplemental Content

Change region shown

Customize view

Reference sequence information

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
External link. Please review our privacy policy.