LOCUS AK038364 4233 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus 16 days neonate thymus cDNA, RIKEN full-length
enriched library, clone:A130098P13 product:CDNA FLJ10678 FIS, CLONE
NT2RP2006472 homolog [Homo sapiens], full insert sequence.
ACCESSION AK038364
VERSION AK038364.1
KEYWORDS HTC; HTC_FLI; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
PUBMED 10349636
REFERENCE 2
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10 (10), 1617-1630 (2000)
PUBMED 11042159
REFERENCE 3
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N., Carninci,P.,
Konno,H., Akiyama,J., Nishi,K., Kitsunai,T., Tashiro,H., Itoh,M.,
Sumi,N., Ishii,Y., Nakamura,S., Hazama,M., Nishine,T., Harada,A.,
Yamamoto,R., Matsumoto,H., Sakaguchi,S., Ikegami,T., Kashiwagi,K.,
Fujiwake,S., Inoue,K., Togawa,Y., Izawa,M., Ohara,E., Watahiki,M.,
Yoneda,Y., Ishikawa,T., Ozawa,K., Tanaka,T., Matsuura,S., Kawai,J.,
Okazaki,Y., Muramatsu,M., Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system--384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10 (11), 1757-1771 (2000)
PUBMED 11076861
REFERENCE 4
AUTHORS Kawai,J., Shinagawa,A., Shibata,K., Yoshino,M., Itoh,M., Ishii,Y.,
Arakawa,T., Hara,A., Fukunishi,Y., Konno,H., Adachi,J., Fukuda,S.,
Aizawa,K., Izawa,M., Nishi,K., Kiyosawa,H., Kondo,S., Yamanaka,I.,
Saito,T., Okazaki,Y., Gojobori,T., Bono,H., Kasukawa,T., Saito,R.,
Kadota,K., Matsuda,H., Ashburner,M., Batalov,S., Casavant,T.,
Fleischmann,W., Gaasterland,T., Gissi,C., King,B., Kochiwa,H.,
Kuehl,P., Lewis,S., Matsuo,Y., Nikaido,I., Pesole,G.,
Quackenbush,J., Schriml,L.M., Staubli,F., Suzuki,R., Tomita,M.,
Wagner,L., Washio,T., Sakai,K., Okido,T., Furuno,M., Aono,H.,
Baldarelli,R., Barsh,G., Blake,J., Boffelli,D., Bojunga,N.,
Carninci,P., de Bonaldo,M.F., Brownstein,M.J., Bult,C.,
Fletcher,C., Fujita,M., Gariboldi,M., Gustincich,S., Hill,D.,
Hofmann,M., Hume,D.A., Kamiya,M., Lee,N.H., Lyons,P.,
Marchionni,L., Mashima,J., Mazzarelli,J., Mombaerts,P., Nordone,P.,
Ring,B., Ringwald,M., Rodriguez,I., Sakamoto,N., Sasaki,H.,
Sato,K., Schonbach,C., Seya,T., Shibata,Y., Storch,K.F., Suzuki,H.,
Toyo-oka,K., Wang,K.H., Weitz,C., Whittaker,C., Wilming,L.,
Wynshaw-Boris,A., Yoshida,K., Hasegawa,Y., Kawaji,H., Kohtsuki,S.
and Hayashizaki,Y.
CONSRTM RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409 (6821), 685-690 (2001)
PUBMED 11217851
REFERENCE 5
AUTHORS Okazaki,Y., Furuno,M., Kasukawa,T., Adachi,J., Bono,H., Kondo,S.,
Nikaido,I., Osato,N., Saito,R., Suzuki,H., Yamanaka,I.,
Kiyosawa,H., Yagi,K., Tomaru,Y., Hasegawa,Y., Nogami,A.,
Schonbach,C., Gojobori,T., Baldarelli,R., Hill,D.P., Bult,C.,
Hume,D.A., Quackenbush,J., Schriml,L.M., Kanapin,A., Matsuda,H.,
Batalov,S., Beisel,K.W., Blake,J.A., Bradt,D., Brusic,V.,
Chothia,C., Corbani,L.E., Cousins,S., Dalla,E., Dragani,T.A.,
Fletcher,C.F., Forrest,A., Frazer,K.S., Gaasterland,T.,
Gariboldi,M., Gissi,C., Godzik,A., Gough,J., Grimmond,S.,
Gustincich,S., Hirokawa,N., Jackson,I.J., Jarvis,E.D., Kanai,A.,
Kawaji,H., Kawasawa,Y., Kedzierski,R.M., King,B.L., Konagaya,A.,
Kurochkin,I.V., Lee,Y., Lenhard,B., Lyons,P.A., Maglott,D.R.,
Maltais,L., Marchionni,L., McKenzie,L., Miki,H., Nagashima,T.,
Numata,K., Okido,T., Pavan,W.J., Pertea,G., Pesole,G.,
Petrovsky,N., Pillai,R., Pontius,J.U., Qi,D., Ramachandran,S.,
Ravasi,T., Reed,J.C., Reed,D.J., Reid,J., Ring,B.Z., Ringwald,M.,
Sandelin,A., Schneider,C., Semple,C.A., Setou,M., Shimada,K.,
Sultana,R., Takenaka,Y., Taylor,M.S., Teasdale,R.D., Tomita,M.,
Verardo,R., Wagner,L., Wahlestedt,C., Wang,Y., Watanabe,Y.,
Wells,C., Wilming,L.G., Wynshaw-Boris,A., Yanagisawa,M., Yang,I.,
Yang,L., Yuan,Z., Zavolan,M., Zhu,Y., Zimmer,A., Carninci,P.,
Hayatsu,N., Hirozane-Kishikawa,T., Konno,H., Nakamura,M.,
Sakazume,N., Sato,K., Shiraki,T., Waki,K., Kawai,J., Aizawa,K.,
Arakawa,T., Fukuda,S., Hara,A., Hashizume,W., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Miyazaki,A., Sakai,K., Sasaki,D., Shibata,K.,
Shinagawa,A., Yasunishi,A., Yoshino,M., Waterston,R., Lander,E.S.,
Rogers,J., Birney,E. and Hayashizaki,Y.
CONSRTM FANTOM Consortium; RIKEN Genome Exploration Research Group Phase I
& II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420 (6915), 563-573 (2002)
PUBMED 12466851
REFERENCE 6
AUTHORS Carninci,P., Kasukawa,T., Katayama,S., Gough,J., Frith,M.C.,
Maeda,N., Oyama,R., Ravasi,T., Lenhard,B., Wells,C., Kodzius,R.,
Shimokawa,K., Bajic,V.B., Brenner,S.E., Batalov,S., Forrest,A.R.,
Zavolan,M., Davis,M.J., Wilming,L.G., Aidinis,V., Allen,J.E.,
Ambesi-Impiombato,A., Apweiler,R., Aturaliya,R.N., Bailey,T.L.,
Bansal,M., Baxter,L., Beisel,K.W., Bersano,T., Bono,H., Chalk,A.M.,
Chiu,K.P., Choudhary,V., Christoffels,A., Clutterbuck,D.R.,
Crowe,M.L., Dalla,E., Dalrymple,B.P., de Bono,B., Della Gatta,G.,
di Bernardo,D., Down,T., Engstrom,P., Fagiolini,M., Faulkner,G.,
Fletcher,C.F., Fukushima,T., Furuno,M., Futaki,S., Gariboldi,M.,
Georgii-Hemming,P., Gingeras,T.R., Gojobori,T., Green,R.E.,
Gustincich,S., Harbers,M., Hayashi,Y., Hensch,T.K., Hirokawa,N.,
Hill,D., Huminiecki,L., Iacono,M., Ikeo,K., Iwama,A., Ishikawa,T.,
Jakt,M., Kanapin,A., Katoh,M., Kawasawa,Y., Kelso,J., Kitamura,H.,
Kitano,H., Kollias,G., Krishnan,S.P., Kruger,A., Kummerfeld,S.K.,
Kurochkin,I.V., Lareau,L.F., Lazarevic,D., Lipovich,L., Liu,J.,
Liuni,S., McWilliam,S., Madan Babu,M., Madera,M., Marchionni,L.,
Matsuda,H., Matsuzawa,S., Miki,H., Mignone,F., Miyake,S.,
Morris,K., Mottagui-Tabar,S., Mulder,N., Nakano,N., Nakauchi,H.,
Ng,P., Nilsson,R., Nishiguchi,S., Nishikawa,S., Nori,F., Ohara,O.,
Okazaki,Y., Orlando,V., Pang,K.C., Pavan,W.J., Pavesi,G.,
Pesole,G., Petrovsky,N., Piazza,S., Reed,J., Reid,J.F., Ring,B.Z.,
Ringwald,M., Rost,B., Ruan,Y., Salzberg,S.L., Sandelin,A.,
Schneider,C., Schonbach,C., Sekiguchi,K., Semple,C.A., Seno,S.,
Sessa,L., Sheng,Y., Shibata,Y., Shimada,H., Shimada,K., Silva,D.,
Sinclair,B., Sperling,S., Stupka,E., Sugiura,K., Sultana,R.,
Takenaka,Y., Taki,K., Tammoja,K., Tan,S.L., Tang,S., Taylor,M.S.,
Tegner,J., Teichmann,S.A., Ueda,H.R., van Nimwegen,E., Verardo,R.,
Wei,C.L., Yagi,K., Yamanishi,H., Zabarovsky,E., Zhu,S., Zimmer,A.,
Hide,W., Bult,C., Grimmond,S.M., Teasdale,R.D., Liu,E.T.,
Brusic,V., Quackenbush,J., Wahlestedt,C., Mattick,J.S., Hume,D.A.,
Kai,C., Sasaki,D., Tomaru,Y., Fukuda,S., Kanamori-Katayama,M.,
Suzuki,M., Aoki,J., Arakawa,T., Iida,J., Imamura,K., Itoh,M.,
Kato,T., Kawaji,H., Kawagashira,N., Kawashima,T., Kojima,M.,
Kondo,S., Konno,H., Nakano,K., Ninomiya,N., Nishio,T., Okada,M.,
Plessy,C., Shibata,K., Shiraki,T., Suzuki,S., Tagami,M., Waki,K.,
Watahiki,A., Okamura-Oho,Y., Suzuki,H., Kawai,J. and Hayashizaki,Y.
CONSRTM FANTOM Consortium; RIKEN Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The transcriptional landscape of the mammalian genome
JOURNAL Science 309 (5740), 1559-1563 (2005)
PUBMED 16141072
REFERENCE 7
AUTHORS Katayama,S., Tomaru,Y., Kasukawa,T., Waki,K., Nakanishi,M.,
Nakamura,M., Nishida,H., Yap,C.C., Suzuki,M., Kawai,J., Suzuki,H.,
Carninci,P., Hayashizaki,Y., Wells,C., Frith,M., Ravasi,T.,
Pang,K.C., Hallinan,J., Mattick,J., Hume,D.A., Lipovich,L.,
Batalov,S., Engstrom,P.G., Mizuno,Y., Faghihi,M.A., Sandelin,A.,
Chalk,A.M., Mottagui-Tabar,S., Liang,Z., Lenhard,B. and
Wahlestedt,C.
CONSRTM RIKEN Genome Exploration Research Group; Genome Science Group
(Genome Network Project Core Group); FANTOM Consortium
TITLE Antisense transcription in the mammalian transcriptome
JOURNAL Science 309 (5740), 1564-1566 (2005)
PUBMED 16141073
REFERENCE 8 (bases 1 to 4233)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H., Carninci,P.,
Fukuda,S., Furuno,M., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hirozane,T.,
Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kasukawa,T.,
Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M., Ohsato,N.,
Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N.,
Sano,H., Sasaki,D., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Takeda,Y., Tanaka,T., Tomaru,A., Toya,T., Yasunishi,A.,
Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (16-JUL-2001) Contact:Yoshihide Hayashizaki The Institute
of Physical and Chemical Research (RIKEN), Omics Science Center,
RIKEN Yokohama Institute; 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama,
Kanagawa 230-0045, Japan URL :http://www.osc.riken.jp/
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=A130098P13.
FEATURES Location/Qualifiers
source 1..4233
/organism="Mus musculus"
/mol_type="mRNA"
/strain="C57BL/6J"
/db_xref="FANTOM_DB:A130098P13"
/db_xref="MGI:MGI:2402780"
/db_xref="taxon:10090"
/clone="A130098P13"
/tissue_type="thymus"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/dev_stage="16 days neonate"
misc_feature 1..4233
/note="CDNA FLJ10678 FIS, CLONE NT2RP2006472 homolog [Homo
sapiens] (SPTR|Q9NVK3, evidence: FASTY, 92.1%ID,
23.3%length, match=495);
putative"
ORIGIN
1 tttattttca attgagtcat tatttctttt gatattttca gattttactt tcccgtatta
61 aaaactatac tgtcccagaa gaagaaattg ggtctttctt gtttcatgct attaacaagc
121 caaatgctcc tgtctggctc attctgaatg aagcaggcct gtactggaga gcagtaggaa
181 acagcacctt tgctatcgcc tgcctccaga gggctttgaa tttagctcca gttcaatacc
241 aggacattcc tcttgtcaac ctggccaacc ttttgattca ttacggcctt catcttgatg
301 ctacaaagtt gctgctgcaa gccgtggctg tcaacagctc tgagcccctg acctttttga
361 gcctgggaaa tgcttacctt gctctgaaga atgtcagcgg ggcacttgaa gccttcagac
421 aggccttgaa gctaagcacc aaatgcccag agtgtgagag cagcctgaag ctgatccgct
481 gcatgcagtt ctacccgttc ctgtacaacg ccacctcttc tgtctgtggc ggtaagcacc
541 taataaacgc cacaagctca cccggctttg ctgccgtaac ccaagcaaca cagagatggt
601 ttggggaact tcctccaggg ttttaaaaag ctaaccctag ctgtatagca gagaaatcca
661 ttcattaatt actggaatta gtagttaacg ttgatttcca gaccttagct aagaaatact
721 gactaatgta tacagtgaaa ttgtattttc cagagtttgt catgggagta ttttctctcc
781 cataaatttg tttaaccctg actaataatc acggtaaagg aaattcatga agccgtatgt
841 gtcatgagca cagccctaca tacttacccc tgaaaacagc tccctgcctt tcagaggagt
901 gatttcccct tcctgcacct tgtccatagt gatggtatat cacaggggtc ctttctcttt
961 gtgtgcagct gccttggcag aactggtatg aagcttaaaa gtcacatgaa ccctaatagc
1021 ctttgcttta aggaaaagat tgtctgtttc acattctgcc tttgatcagc agcctctgga
1081 gaggtggggg aaggcgcaga tcttctgcac tagccagcgt taggtggagc aacagttttc
1141 actccactga ttgtccagat tatagtataa ggcattctag ttccttcaat agtgatatca
1201 aaaactgagc atatctcata cccagttgac atggcttgac ttagataatt tataatagac
1261 ttaagaccag aaactggttt cctggttcac tttaccagac tgcctcaggg ttttgatgga
1321 attgggaata agtgtacttg caccaaagcc tgtcagaacc atcatatagg tcagatgcct
1381 gtcaacattg ggcatgatac aaattagagt tctcatgaat accaaaggcc tggatagtgt
1441 tttagcaagg ggtagtcaag tggccagcac aagaattaca cagattcttg cctgaccatg
1501 ctctgccata ctttctgatc ccagaaaagt agcatcattg cctataccat gaacaacaat
1561 aaaaaccatt gcatacttgc cgaggaaacc aagtgaggta tttatcatag agtgggtaac
1621 tggataaagg taagacttca gagattgata gtagggccag tgacatggct cagcagggaa
1681 acgcatgtgc tgccaagccg aaagccatga cgtcaatcct ctgaacccat atagtagaag
1741 agaaccagct cccacaaatt gccctgtaac ctccacatgt gtaacttggc gtgcgcatgc
1801 acacattaaa tgaaaatgaa actttaaaga catttattgt aaatgcaaag tattcagagt
1861 tttcaaagca caagtgttgt tcttactctt acttcaacct agaaaatgtg gtctttggat
1921 attgctggtt atccaagagg tcacatagca gtgaccttct tctaaatact atttttcttg
1981 tattaacatt gcatatttgt gctcagtgtt gttgttttga tttgtttcgt ttcttgcact
2041 ttcttaattc ctatgtcact cgtgtcagca gaaagaatct agttgtgatg acttgcccct
2101 gagacctaac ttgtacaaga acaaataaca tgagatagat cttcatcaga tgtggagcat
2161 ctgctggtct agattatctc agtgacatct ttgggtgcac tataactagg aaagaaagca
2221 atttagctta gaagatggac taccattgtt ctttcagaga gaacttatcc gcaaaacttg
2281 gacaagattc catttttacc cataagtaac tagctgcata aaccatgaag cctctgcgct
2341 gcttggcttc catcacagga acaggctctc ctaccagtcc tctaagatgg tgatgtgaat
2401 gtgacagtgt ctacccagga gcacctccac agtgctccta ggtatgaagc ccagccatct
2461 catgaagtga ctattactaa tttttcctta gtttaacaaa cccatttcaa gtattttatg
2521 aaggaagact taaaaggttg aatttttaca cgtttcttat tatttcttta agaattctgt
2581 aaaatgtatg cttctattca cccatctctt ctcagagcca ctctcccttc cccttcccct
2641 tcttcccctt ccccttcccc ttccccttcc caacaacttt gtgccctctt ccacatcaag
2701 gctgcccaca tattctcaga tgtgtcacgt cttccactag agcatggtca gcgtttgaga
2761 ggccgcactc ttagagctga tgctctctct ctaagcagtt ctctgtatag gaggtggaat
2821 ttcatgccca cttcccctct tcatgctggg atttggtctg ctttaggctg gcacaaccac
2881 tgggagttcc gatgtatagc tgcctgctgg gtccagaaga cactgttttc ttgtagtcta
2941 ctatctctga ctcttactct ctccactccc cttccacaat gatccctgag tctttgaaga
3001 gggcaataca ttatatgtat ccacttagga ctgacattgt cgagtctttt attctttgtt
3061 ccttggccag ttgaaggtct ctgtgttggt cattacccat tgtaaacaga agcttctcaa
3121 atgagggttg agagatgcct tgattgatgt ccacaatgat aaatcattag gagatgattt
3181 aatatttgca tttaacagga aaatagtaac agattctttt ccagggccta tgacctatct
3241 aatcatgcgg gttggctttt tgtttttgtt tgtttgtttg tttgtgccca ataatggtgc
3301 caggaatggg tttcatcttg gggttcaggc cttaaattca atcagaaagg ggtttgttat
3361 tcccaccaca ttcattgcac tgttgcatca atggtcatgc ctgacagctt agtaaggttg
3421 atggctgctt ttctcctctc gacacatgca tagccccttc cagcaccact caagccagcc
3481 agtatggacg atgcttccag gtcagtactg ttctgtgacc agagtgtgta gtgtctgcag
3541 caatgcaggt gtacaatcaa tgcaccaaga tacatggtta cctaaaaata ttacaccaga
3601 ttgtagaagt taggagtaaa tagtctagag tcataaacaa atatcagtgt atcttagaat
3661 tttagaccag tttctatgta atgtgtgttt ggtagccttt gcaatgattt ccaaatcatg
3721 ttaatgaact ctggatgctc gagatgtaca gatgaatgac cttgtattct tcttatagca
3781 tttctgtatc tcaccattta caggaatatc tcttttctaa tgcttcattc tctgaggctt
3841 tagtctgctt tctgcatcag gaatttctgt agatttatgg cttgctgcac acattgttct
3901 ataatttaga ttttcagaag gagatgttgc atgttgctgc ctcctgcaga ctctgcagca
3961 tataccacct gcagctgtac ttcactttcc tcacaagaat tgctggggaa gggagtattt
4021 gtttttaaga tttttataga tccaatttgg ggagaacttc aatatgtaat tatgccatct
4081 ctgtttattt ccccaaaata atttagaact ttttaaggac tatagttatg gttaccagat
4141 aatttatttg acatgtatct gtgtgataaa ggaagaataa gaaaaaggtt gtgagcttat
4201 gtctagaaac aaagattatg atttgcccaa gtc
//