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Escherichia albertii strain MBT-EA1, whole genome shotgun sequencing project

GenBank: PTLP00000000.1

  • This entry is the master record for a whole genome shotgun sequencing project and contains no sequence data.

LOCUS       PTLP01000000              10 rc    DNA     linear   BCT 07-AUG-2020
DEFINITION  Escherichia albertii strain MBT-EA1, whole genome shotgun
            sequencing project.
ACCESSION   PTLP00000000
VERSION     PTLP00000000.1
DBLINK      BioProject: PRJNA433818
            BioSample: SAMN08518099
KEYWORDS    WGS.
SOURCE      Escherichia albertii
  ORGANISM  Escherichia albertii
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Escherichia.
REFERENCE   1  (bases 1 to 10)
  AUTHORS   Fiedler,G., Brinks,E., Boehnlein,C., Cho,G.-S., Koberg,S.,
            Kabisch,J. and Franz,C.M.A.P.
  TITLE     Draft Genome Sequence of the Intimin-Positive Enteropathogenic
            Escherichia albertii Strain MBT-EA1, Isolated from Lettuce
  JOURNAL   Genome Announc 6 (15), e00255-18 (2018)
  REMARK    DOI: 10.1128/genomea.00255-18
REFERENCE   2  (bases 1 to 10)
  AUTHORS   Fiedler,G., Kabisch,J., Brinks,E., Cho,G.-S., Koberg,S.,
            Boehnlein,C. and Franz,C.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-FEB-2018) Microbiology and Biotechnology, Max
            Rubner-Institut, Hermann-Weigmann-Str. 1, Kiel 24103, Germany
COMMENT     The Escherichia albertii whole genome shotgun (WGS) project has the
            project accession PTLP00000000.  This version of the project (01)
            has the accession number PTLP01000000, and consists of sequences
            PTLP01000001-PTLP01000010.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 17-NOV-2017
            Assembly Method        :: SPAdes v. 3.09.01
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 30.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 02/16/2018 18:46:58
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.4
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 4,859
            CDS (total)                       :: 4,763
            Genes (coding)                    :: 4,520
            CDS (coding)                      :: 4,520
            Genes (RNA)                       :: 96
            rRNAs                             :: 6, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 1, 2 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 80
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 243
            Pseudo Genes (ambiguous residues) :: 0 of 243
            Pseudo Genes (frameshifted)       :: 119 of 243
            Pseudo Genes (incomplete)         :: 94 of 243
            Pseudo Genes (internal stop)      :: 87 of 243
            Pseudo Genes (multiple problems)  :: 51 of 243
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10
                     /organism="Escherichia albertii"
                     /mol_type="genomic DNA"
                     /strain="MBT-EA1"
                     /isolation_source="fresh produce (lettuce, lollo bionda)"
                     /db_xref="taxon:208962"
                     /geo_loc_name="Germany"
                     /lat_lon="51.0948 N 10.2652 E"
                     /collection_date="10-May-2017"
                     /collected_by="G. Fiedler, J. Kabisch"
WGS         PTLP01000001-PTLP01000010
WGS_SCAFLD  CM009573
//
Feature
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