LOCUS PTLP01000000 10 rc DNA linear BCT 07-AUG-2020
DEFINITION Escherichia albertii strain MBT-EA1, whole genome shotgun
sequencing project.
ACCESSION PTLP00000000
VERSION PTLP00000000.1
DBLINK BioProject: PRJNA433818
BioSample: SAMN08518099
KEYWORDS WGS.
SOURCE Escherichia albertii
ORGANISM Escherichia albertii
Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
Enterobacterales; Enterobacteriaceae; Escherichia.
REFERENCE 1 (bases 1 to 10)
AUTHORS Fiedler,G., Brinks,E., Boehnlein,C., Cho,G.-S., Koberg,S.,
Kabisch,J. and Franz,C.M.A.P.
TITLE Draft Genome Sequence of the Intimin-Positive Enteropathogenic
Escherichia albertii Strain MBT-EA1, Isolated from Lettuce
JOURNAL Genome Announc 6 (15), e00255-18 (2018)
REMARK DOI: 10.1128/genomea.00255-18
REFERENCE 2 (bases 1 to 10)
AUTHORS Fiedler,G., Kabisch,J., Brinks,E., Cho,G.-S., Koberg,S.,
Boehnlein,C. and Franz,C.M.
TITLE Direct Submission
JOURNAL Submitted (12-FEB-2018) Microbiology and Biotechnology, Max
Rubner-Institut, Hermann-Weigmann-Str. 1, Kiel 24103, Germany
COMMENT The Escherichia albertii whole genome shotgun (WGS) project has the
project accession PTLP00000000. This version of the project (01)
has the accession number PTLP01000000, and consists of sequences
PTLP01000001-PTLP01000010.
Annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (released 2013). Information about the Pipeline can be
found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
##Genome-Assembly-Data-START##
Assembly Date :: 17-NOV-2017
Assembly Method :: SPAdes v. 3.09.01
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 30.0x
Sequencing Technology :: Illumina MiSeq
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 02/16/2018 18:46:58
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline
Annotation Method :: Best-placed reference protein
set; GeneMarkS+
Annotation Software revision :: 4.4
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes (total) :: 4,859
CDS (total) :: 4,763
Genes (coding) :: 4,520
CDS (coding) :: 4,520
Genes (RNA) :: 96
rRNAs :: 6, 1, 3 (5S, 16S, 23S)
complete rRNAs :: 6, 1, 2 (5S, 16S, 23S)
partial rRNAs :: 1 (23S)
tRNAs :: 80
ncRNAs :: 6
Pseudo Genes (total) :: 243
Pseudo Genes (ambiguous residues) :: 0 of 243
Pseudo Genes (frameshifted) :: 119 of 243
Pseudo Genes (incomplete) :: 94 of 243
Pseudo Genes (internal stop) :: 87 of 243
Pseudo Genes (multiple problems) :: 51 of 243
CRISPR Arrays :: 2
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..10
/organism="Escherichia albertii"
/mol_type="genomic DNA"
/strain="MBT-EA1"
/isolation_source="fresh produce (lettuce, lollo bionda)"
/db_xref="taxon:208962"
/geo_loc_name="Germany"
/lat_lon="51.0948 N 10.2652 E"
/collection_date="10-May-2017"
/collected_by="G. Fiedler, J. Kabisch"
WGS PTLP01000001-PTLP01000010
WGS_SCAFLD CM009573
//