LOCUS NM_001014626 3149 bp mRNA linear INV 26-DEC-2023
DEFINITION Drosophila melanogaster gilgamesh (gish), transcript variant H,
mRNA.
ACCESSION NM_001014626
VERSION NM_001014626.4
DBLINK BioProject: PRJNA164
BioSample: SAMN02803731
KEYWORDS RefSeq.
SOURCE Drosophila melanogaster (fruit fly)
ORGANISM Drosophila melanogaster
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
REFERENCE 1 (bases 1 to 3149)
AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St
Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K.,
Strelets,V., Russo,S.M. and Gelbart,W.M.
CONSRTM FlyBase Consortium
TITLE Gene Model Annotations for Drosophila melanogaster: Impact of
High-Throughput Data
JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015)
PUBMED 26109357
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 3149)
AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St
Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B.,
Russo,S.M. and Gelbart,W.M.
CONSRTM FlyBase Consortium
TITLE Gene Model Annotations for Drosophila melanogaster: The
Rule-Benders
JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015)
PUBMED 26109356
REMARK Publication Status: Online-Only
REFERENCE 3 (bases 1 to 3149)
AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I.,
Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R.,
Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G.,
Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N.,
Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A.,
Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E.
TITLE The Release 6 reference sequence of the Drosophila melanogaster
genome
JOURNAL Genome Res 25 (3), 445-458 (2015)
PUBMED 25589440
REFERENCE 4 (bases 1 to 3149)
AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M.,
Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F.,
Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E.
TITLE Sequence finishing and mapping of Drosophila melanogaster
heterochromatin
JOURNAL Science 316 (5831), 1625-1628 (2007)
PUBMED 17569867
REFERENCE 5 (bases 1 to 3149)
AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H.
TITLE The Release 5.1 annotation of Drosophila melanogaster
heterochromatin
JOURNAL Science 316 (5831), 1586-1591 (2007)
PUBMED 17569856
REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325]
REFERENCE 6 (bases 1 to 3149)
AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D.,
Ashburner,M. and Anxolabehere,D.
TITLE Combined evidence annotation of transposable elements in genome
sequences
JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005)
PUBMED 16110336
REFERENCE 7 (bases 1 to 3149)
AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A.,
Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A.,
Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W.,
Celniker,S.E., Rubin,G.M. and Karpen,G.H.
TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun
assembly
JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002)
PUBMED 12537574
REFERENCE 8 (bases 1 to 3149)
AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J.,
Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E.,
Rubin,G.M., Ashburner,M. and Celniker,S.E.
TITLE The transposable elements of the Drosophila melanogaster
euchromatin: a genomics perspective
JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002)
PUBMED 12537573
REFERENCE 9 (bases 1 to 3149)
AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S.,
Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E.,
Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L.,
Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D.,
Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J.,
Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M.,
Rubin,G.M. and Lewis,S.E.
TITLE Annotation of the Drosophila melanogaster euchromatic genome: a
systematic review
JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002)
PUBMED 12537572
REFERENCE 10 (bases 1 to 3149)
AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W.,
Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E.,
Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M.,
Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S.,
Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M.,
Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W.,
Gibbs,R.A. and Rubin,G.M.
TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila
melanogaster euchromatic genome sequence
JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002)
PUBMED 12537568
REFERENCE 11 (bases 1 to 3149)
AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D.,
Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F.,
George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N.,
Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X.,
Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D.,
Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L.,
Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D.,
Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M.,
Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S.,
Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P.,
Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A.,
Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B.,
Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I.,
Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S.,
Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C.,
Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S.,
Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z.,
Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J.,
Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J.,
Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z.,
Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C.,
Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A.,
Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C.,
McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C.,
Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L.,
Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K.,
Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S.,
Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K.,
Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I.,
Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C.,
Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R.,
Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A.,
Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT,
Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F.,
Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H.,
Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O.,
Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C.
TITLE The genome sequence of Drosophila melanogaster
JOURNAL Science 287 (5461), 2185-2195 (2000)
PUBMED 10731132
REFERENCE 12 (bases 1 to 3149)
AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R.,
Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R.,
Smith,E., Yu,C. and Rubin,G.
CONSRTM Berkeley Drosophila Genome Project
TITLE Drosophila melanogaster release 4 sequence
JOURNAL Unpublished
REFERENCE 13 (bases 1 to 3149)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 14 (bases 1 to 3149)
CONSRTM FlyBase
TITLE Direct Submission
JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological
Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE 15 (bases 1 to 3149)
CONSRTM FlyBase
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological
Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE 16 (bases 1 to 3149)
CONSRTM FlyBase
TITLE Direct Submission
JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological
Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE 17 (bases 1 to 3149)
CONSRTM FlyBase
TITLE Direct Submission
JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological
Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE 18 (bases 1 to 3149)
CONSRTM FlyBase
TITLE Direct Submission
JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological
Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE 19 (bases 1 to 3149)
CONSRTM FlyBase
TITLE Direct Submission
JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological
Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE 20 (bases 1 to 3149)
CONSRTM FlyBase
TITLE Direct Submission
JOURNAL Submitted (07-OCT-2015) FlyBase, Harvard University, Biological
Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE 21 (bases 1 to 3149)
AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R.,
Park,S., Svirskas,R. and Karpen,G.
TITLE Direct Submission
JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project,
Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne
Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA
REMARK Direct Submission
REFERENCE 22 (bases 1 to 3149)
AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S.,
Svirskas,R. and Rubin,G.
TITLE Direct Submission
JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project,
Lawrence Berkeley National Laboratory, One Cyclotron Road, MS
64-121, Berkeley, CA 94720, USA
REMARK Direct Submission
REFERENCE 23 (bases 1 to 3149)
AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H.
CONSRTM Drosophila Heterochromatin Genome Project
TITLE Direct Submission
JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project,
Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron
Road, Mailstop 64-121, Berkeley, CA 94720, USA
REFERENCE 24 (bases 1 to 3149)
AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J.
TITLE Direct Submission
JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive,
Rockville, MD 20850, USA
COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This
record is derived from an annotated genomic sequence (NT_033777).
On Jan 16, 2013 this sequence version replaced NM_001014626.3.
##Genome-Annotation-Data-START##
Annotation Provider :: FlyBase
Annotation Status :: Full annotation
Annotation Version :: Release 6.54
URL :: http://flybase.org
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..3149
/organism="Drosophila melanogaster"
/mol_type="mRNA"
/db_xref="taxon:7227"
/chromosome="3R"
/genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2]
bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]"
gene 1..3149
/gene="gish"
/locus_tag="Dmel_CG6963"
/gene_synonym="anon-WO0118547.425; CG6963; CK1; CK1-gamma;
CK1gamma; CK1[[gamma]]; CKI-related; CKIgamma;
Dmel\CG6963; Gish; Hrr25; ms(3)89B; NEST:bs27c08; spider;
Spider"
/note="gilgamesh"
/map="89B9-89B12"
/db_xref="FLYBASE:FBgn0250823"
/db_xref="GeneID:49701"
CDS 1245..2651
/gene="gish"
/locus_tag="Dmel_CG6963"
/gene_synonym="anon-WO0118547.425; CG6963; CK1; CK1-gamma;
CK1gamma; CK1[[gamma]]; CKI-related; CKIgamma;
Dmel\CG6963; Gish; Hrr25; ms(3)89B; NEST:bs27c08; spider;
Spider"
/EC_number="2.7.11.1"
/note="CG6963 gene product from transcript CG6963-RH;
CG6963-PH; gish-PH; spider; gilgamesh; casein kinase
1gamma; CKIg-like; NEST:bs27c08"
/codon_start=1
/product="gilgamesh, isoform H"
/protein_id="NP_001014626.1"
/db_xref="FLYBASE:FBpp0099738"
/db_xref="GeneID:49701"
/db_xref="FLYBASE:FBgn0250823"
/translation="MQRRERQASGGGPQTTTAGPSAGNVANATTALAGGKSSSNNMYS
TRQSVSTTTGVLMVGPNFRVGKKIGCGNFGELRLGKNLYNNEHVAIKMEPMKSKAPQL
HLEYRFYKLLGSHADNAPDGIPRIYHLGTCGGRYNAMVLELLGLSLEDLFNICARKFS
LKTVLMIAKQLLHRIEYVHSRHLIYRDVKPENFLIGRTSTKREKIIHIIDFGLAKEYI
DLDTNRHIPYREHKSLTGTARYMSINTHMGREQSRRDDLEALGHMFMYFLRGSLPWQG
LKADTLKERYQKIGDTKRATPIEVLCDGHPEEFATYLRYVRRLDFFETPDYDFLRRLF
QDLFDRKGYTDEGEFDWTGKTMSTPVGSLQTGHEVIISPNKDRHNVTAKTNAKGGVAA
WPDVPKPGATLGNLTPADRHGSVQVVSSTNGELNPDDPTAGHSNTPITQQPEVEVVDE
TKCCCFFKRKKKKSTRQK"
ORIGIN
1 gtctctgtcc atgtataagc gtgtgtgtgt gtgtttgcag gcaggggaaa aaatcgcacc
61 atttttctcg tgctctcttg cgtgcgtttt ttggtctttc gaggattgtt tcgtagaaaa
121 tcagttaaac acaagcccag cttaatttat aaaaagtagt gaactaagtt gttatccaga
181 aatcgacgag cgcacagtag caaatcgagt tgcaaatttc aatattcggt ccgaacgtgt
241 gtaactgtgt ctgtgcgtgc gtgcgtgcgt gtgagagtgt atgggtgaaa aatgaggcgt
301 aatgaaaatg cgtgcaaaac tgtataaaag attgctttga tttccacgat cgtgagcatt
361 aaaagtttag gcgtgatact gaccggttaa atttccctta attgaaattt aactacatat
421 ttaaacagca acatagtccc ttttgcctaa aatgtcatca aaaactggga ggaaaaatat
481 catagcaaca atctgaatga attcggagat tcagatctgt tgtcacaaaa attgttggat
541 aaaatgtgcg aaagtgtgtt tgtcaaattg tttagccaaa attatttgtt tacatagttg
601 ttcagcgtag cacgaggctg ttttccttaa ttcttaacaa catagataca ctcgccttgg
661 ctaatttaca ccggaaccta aagccgatta acaataggaa aatagtccta cgacaaatag
721 cccgcctttt gacatatgaa cacataacta aactaccaca cagctcacca aaaacataaa
781 ataaattcgg aaagtatagc accaaagctg aaatttcaag gagatgctgc tcaaatttca
841 tacttgatgt caaacaacga cgaccccata gcaacaacaa caacaacagc agaaagagaa
901 ggaaaaggaa caactggaat aactgtaagc tagcgaacag agggagagag gcaatctctg
961 tacacacacc tgtcgtccag cgggggaaag agcaaaagag agcgacggat ctcccgtgtg
1021 tgttgttcgc atgcgcgaca tgcgcggacg ctaaatcctg cagatcctcc agtttgttcg
1081 tcaaacagag tcagcatttc ggatcaaacc agttgcctgt cagcaacatt aacagcctca
1141 acgttggaaa aaaaaaaaca aaagcagcag cggcagtcga taaaaaaatc attatcaaaa
1201 ttacggaaaa gcgatcaaaa ttcaagcgag attagctagg cgaaatgcag cgacgagaac
1261 ggcaagcaag tggcggtggc ccacaaacga caactgccgg tccatccgct ggtaatgtgg
1321 caaatgccac cacagcccta gccggtggta aaagctcaag caataacatg tattccaccc
1381 gccaatctgt aagcaccacg accggtgtac ttatggtcgg accaaatttt cgtgtcggta
1441 aaaaaattgg ctgtggtaat tttggcgaat tgcgtttagg caaaaacctt tacaacaatg
1501 aacatgtagc aataaaaatg gagcctatga agtcaaaggc tccgcaacta cacttagagt
1561 ataggtttta taaactatta ggatcacatg ccgataacgc cccagatggc ataccacgca
1621 tttatcattt gggcacttgc ggtggccgtt acaatgccat ggttttagag ttattgggat
1681 tatcattaga agatctcttc aatatttgcg cccgtaaatt ttcacttaag actgtattga
1741 tgatagcgaa acaacttctc caccggatcg aatatgttca tagtcggcac ttaatatata
1801 gggatgtgaa accagagaac tttctcattg gcagaacgtc aacaaaacgt gaaaaaatta
1861 tacatataat tgatttcggt ttggccaaag aatacattga tttagataca aataggcata
1921 taccatatcg ggagcataaa tccctaactg gaacggcacg ttatatgtca atcaacacgc
1981 acatggggcg tgagcagtcg cgacgcgatg atctggaggc attggggcat atgtttatgt
2041 atttcttaag gggttcactg ccgtggcaag gcctaaaggc tgatacactc aaggagagat
2101 atcaaaaaat cggtgatacg aaacgagcaa cgcccatcga ggtgctttgt gatggacatc
2161 cggaagagtt tgcgacatat ttgcgttatg tacggcggtt agattttttc gaaactcccg
2221 actatgattt tctgcgaaga ctgtttcaag acttattcga tcgtaaggga tacaccgacg
2281 agggcgagtt cgactggaca gggaagacaa tgtcaacgcc cgtcggatct ctgcaaactg
2341 gccatgaagt catcatttca ccaaataaag atcgtcataa tgttacggct aagacaaatg
2401 ccaaaggagg tgttgctgcg tggcctgatg tgccaaagcc gggggcaaca ctgggcaatc
2461 taacgccggc cgatcggcat ggttcagtac aggttgtgag ttcgacgaat ggcgaactaa
2521 atccggacga tcccacggcc ggacactcaa acacgcccat cacacagcag ccggaagtcg
2581 aagtggtcga tgaaacaaaa tgttgttgtt tctttaaacg aaagaagaag aaatcgacgc
2641 gccaaaaatg actagacggt gtacaatgta gtccagaacg cgaggcagtc accctgctgc
2701 gtgccacttc acattcaaac tcacgggata gcgtattgaa taatccgagt caggattata
2761 tccagcaggc aacgtcgcag catacgttgc gttatcctcc atccgcgtcg atgttgacgc
2821 caacaccaac tacaaacaca ccgacacttc cgttgtaatt tatataaata taaagccaga
2881 tgcaaaatgc agaaagcaac aaaaaaaata ttaaacgaaa cccaacaaaa caaaaacaaa
2941 acaaatgaac cccgtacaca ttaaatacac taaaaaacag taaaaacaaa caaaatgaaa
3001 ccaattttga ttaattattg taatgattgt attttattat tatttttatt atttaccaat
3061 tttgcgttta ttatataaat tattataatt attaattata ttattaatta atgctattat
3121 aaataaaaaa gaaaagaaaa ttcaaacgt
//