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Arabidopsis thaliana PapD-like superfamily protein (AT4G21450), mRNA

NCBI Reference Sequence: NM_202855.1

FASTA Graphics 

LOCUS       NM_202855               1480 bp    mRNA    linear   PLN 20-OCT-2022
DEFINITION  Arabidopsis thaliana PapD-like superfamily protein (AT4G21450),
            mRNA.
ACCESSION   NM_202855
VERSION     NM_202855.1
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (bases 1 to 1480)
  AUTHORS   Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G.,
            Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N.,
            Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M.,
            Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R.,
            Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M.,
            Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M.,
            Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W.,
            Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L.,
            Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J.,
            Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I.,
            Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U.,
            Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van
            Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M.,
            Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M.,
            Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C.,
            Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J.,
            Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S.,
            Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A.,
            Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D.,
            Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de
            Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M.,
            Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S.,
            Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O.,
            Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S.,
            Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F.,
            Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T.,
            Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A.,
            Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D.,
            Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P.,
            Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W.,
            Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M.,
            Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E.,
            Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M.,
            Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G.,
            Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A.,
            Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N.,
            Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M.,
            Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S.,
            Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K.,
            Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C.,
            Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D.,
            Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A.,
            Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N.,
            Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M.,
            Martienssen,R. and McCombie,W.R.
  TITLE     Sequence and analysis of chromosome 4 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 402 (6763), 769-777 (1999)
   PUBMED   10617198
REFERENCE   2  (bases 1 to 1480)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 1480)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (bases 1 to 1480)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            This record is derived from an annotated genomic sequence
            (NC_003075).
FEATURES             Location/Qualifiers
     source          1..1480
                     /organism="Arabidopsis thaliana"
                     /mol_type="mRNA"
                     /db_xref="taxon:3702"
                     /chromosome="4"
                     /ecotype="Columbia"
     gene            1..1480
                     /locus_tag="AT4G21450"
                     /gene_synonym="F18E5.70; F18E5_70"
                     /db_xref="Araport:AT4G21450"
                     /db_xref="GeneID:826300"
                     /db_xref="TAIR:AT4G21450"
     CDS             114..752
                     /locus_tag="AT4G21450"
                     /gene_synonym="F18E5.70; F18E5_70"
                     /inference="Similar to RNA sequence,
                     EST:INSD:ES004635.1,INSD:ES204740.1,INSD:DR327785.1,
                     INSD:DR327794.1,INSD:DR327784.1,INSD:DR327781.1,
                     INSD:EG440689.1,INSD:EL239901.1,INSD:EL059034.1,
                     INSD:EH827409.1,INSD:EL308947.1,INSD:DR327790.1,
                     INSD:EL226258.1,INSD:EL291948.1,INSD:EL216514.1,
                     INSD:ES151928.1,INSD:EL260150.1,INSD:DR327795.1,
                     INSD:EL046774.1,INSD:EL331872.1,INSD:DR327780.1,
                     INSD:DR327783.1,INSD:AV812411.1,INSD:ES189071.1,
                     INSD:DR327782.1,INSD:EG499324.1,INSD:ES055398.1,
                     INSD:ES037576.1,INSD:ES155089.1,INSD:DR327788.1,
                     INSD:EL108874.1,INSD:EL972800.1,INSD:DR327798.1,
                     INSD:EH824813.1,INSD:ES192567.1,INSD:EL158704.1,
                     INSD:ES205513.1,INSD:EL097675.1,INSD:DR327793.1,
                     INSD:EL088674.1,INSD:DR327787.1,INSD:EL975846.1,
                     INSD:T04787.1,INSD:EL081420.1,INSD:ES034719.1,
                     INSD:ES191855.1,INSD:BE845002.1,INSD:EL093269.1,
                     INSD:ES130876.1,INSD:ES005966.1,INSD:DR327779.1,
                     INSD:ES053252.1,INSD:DR327791.1,INSD:DR327789.1,
                     INSD:ES138232.1,INSD:ES198482.1,INSD:EG499325.1,
                     INSD:EH867054.1,INSD:ES080299.1,INSD:EL213337.1,
                     INSD:DR327777.1,INSD:EL971098.1,INSD:ES128716.1,
                     INSD:EG464126.1,INSD:DR327778.1,INSD:ES113135.1,
                     INSD:EL072465.1,INSD:EL316797.1,INSD:EH981298.1,
                     INSD:DR327792.1,INSD:ES152693.1,INSD:ES176749.1,
                     INSD:EL034693.1,INSD:EL011234.1,INSD:DR327797.1,
                     INSD:EL151098.1,INSD:DR327786.1,INSD:EL031739.1,
                     INSD:EL279644.1,INSD:EL312570.1,INSD:ES203047.1,
                     INSD:AA651401.1,INSD:ES119643.1,INSD:ES030895.1,
                     INSD:ES216102.1,INSD:ES107833.1,INSD:ES091339.1,
                     INSD:EL042658.1,INSD:EL326704.1,INSD:ES161243.1,
                     INSD:BP625137.1,INSD:EL981761.1,INSD:EL263836.1,
                     INSD:H37091.1"
                     /note="PapD-like superfamily protein; FUNCTIONS IN:
                     structural molecule activity; INVOLVED IN:
                     biological_process unknown; LOCATED IN: plasma membrane;
                     EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13
                     growth stages; CONTAINS InterPro DOMAIN/s: PapD-like
                     (InterPro:IPR008962), Major sperm protein
                     (InterPro:IPR000535); BEST Arabidopsis thaliana protein
                     match is: PapD-like superfamily protein
                     (TAIR:AT4G05060.1); Has 35333 Blast hits to 34131 proteins
                     in 2444 species: Archae - 798; Bacteria - 22429; Metazoa -
                     974; Fungi - 991; Plants - 531; Viruses - 0; Other
                     Eukaryotes - 9610 (source: NCBI BLink)."
                     /codon_start=1
                     /product="PapD-like superfamily protein"
                     /protein_id="NP_974584.1"
                     /db_xref="GeneID:826300"
                     /db_xref="TAIR:AT4G21450"
                     /db_xref="Araport:AT4G21450"
                     /translation="MTMTEEKPTSDGKGGWGFFKIPFRNSSGHRNAASSAATSPFPSG
                     ASSSSTSSHLHNHHQHHHQHHHQHHHQLGYNGPHGDGSGQNQHPTPSPSVSSVAKSFL
                     PTKRRLKLDPSEKLYFPYEPGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAI
                     LAPGETIIATVFKFVEPPENNEKPMDQRSRVKFKIMSLKVKGPMDYVPELVC"
ORIGIN      
        1 taaatccact tctctctcac catctcacgt ccgatctctc ctctctgagc tctcatcacg
       61 agtcaacccc tttctccgtc gaaattcgca tgcttaaact ctgagagaag aagatgacta
      121 tgacggagga gaaaccaact tccgacggca aaggaggttg gggtttcttc aagattccat
      181 ttcgtaactc aagcggtcac agaaacgccg cttcaagtgc tgctacttct ccgtttccat
      241 ctggagcttc ttcttcttct acttcttctc atctacataa ccatcatcaa catcatcatc
      301 aacatcacca tcagcaccat catcagcttg gttataacgg tcctcacggt gatggatcgg
      361 gtcaaaatca acatccgact ccttctcctt cagtttcatc tgttgctaag tcttttcttc
      421 ctactaaacg aagattgaag cttgatcctt ctgagaaact ctattttcct tatgagcctg
      481 ggaagcaagt taggagtgct attaagatta aaaatacaag caaatcacat gtagccttca
      541 agtttcaaac aactgcgccg aagagttgct ttatgcgtcc acctggtgct attcttgctc
      601 ctggagagac tattattgct actgtgttta aatttgttga gcctcctgag aataatgaga
      661 agccaatgga tcaaaggagc agagtgaagt ttaaaatcat gagcctgaag gtgaaaggtc
      721 caatggacta tgtgcctgag ctggtatgtt gatcttctga tcttatctat tagctgatct
      781 ttgaacatga aaacagtagt aacatatccg aatccagata gaacataaga tattgaccca
      841 tctctaaaac ataagatatc aatgactaga ctaagaatgt gttttggtct gagtagaggt
      901 ttccagttac cttttaaggc acaaacatat aaccaagcat tccactgaat gctgtttcca
      961 tctaaaagac atatcgattg cttttgtttt tgtttttttc tcagttcgat gagcaaaagg
     1021 atgatgtctc taaggagcaa atattgcgtg tgattttctt ggatcctgag cgctccaacc
     1081 ctgcattgga aaaactgaag cgtcaattag cagaagcgga tgcagcggtg gaggcacgaa
     1141 agaaacctcc agaggaaaca ggtccaaaga tgattggaga agggcttgtg atcgatgaat
     1201 ggaaggagcg tagagagaga tatcttgcac agcaacaagg cgaaggagct gactctgtct
     1261 gagagactaa aagagttttc tcaggacaaa aacaagtgcg cttgtgaaga tgaagaagaa
     1321 gggaccgcta tattgaattt atatgctaac ttctagattc atgatgcaat atataaggat
     1381 catgctggta aaaaaaaaag acaatgaagg aaactttttt catgtaaaaa agaaatgtaa
     1441 acttgggttt gatgataatg aattgttcat gttaaggact
//
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