LOCUS NM_202855 1480 bp mRNA linear PLN 20-OCT-2022
DEFINITION Arabidopsis thaliana PapD-like superfamily protein (AT4G21450),
mRNA.
ACCESSION NM_202855
VERSION NM_202855.1
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 1480)
AUTHORS Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G.,
Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N.,
Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M.,
Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R.,
Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M.,
Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M.,
Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W.,
Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L.,
Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J.,
Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I.,
Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U.,
Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van
Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M.,
Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M.,
Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C.,
Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J.,
Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S.,
Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A.,
Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D.,
Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de
Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M.,
Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S.,
Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O.,
Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S.,
Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F.,
Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T.,
Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A.,
Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D.,
Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P.,
Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W.,
Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M.,
Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E.,
Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M.,
Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G.,
Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A.,
Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N.,
Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M.,
Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S.,
Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K.,
Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C.,
Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D.,
Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A.,
Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N.,
Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M.,
Martienssen,R. and McCombie,W.R.
TITLE Sequence and analysis of chromosome 4 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 769-777 (1999)
PUBMED 10617198
REFERENCE 2 (bases 1 to 1480)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 1480)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (bases 1 to 1480)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
This record is derived from an annotated genomic sequence
(NC_003075).
FEATURES Location/Qualifiers
source 1..1480
/organism="Arabidopsis thaliana"
/mol_type="mRNA"
/db_xref="taxon:3702"
/chromosome="4"
/ecotype="Columbia"
gene 1..1480
/locus_tag="AT4G21450"
/gene_synonym="F18E5.70; F18E5_70"
/db_xref="Araport:AT4G21450"
/db_xref="GeneID:826300"
/db_xref="TAIR:AT4G21450"
CDS 114..752
/locus_tag="AT4G21450"
/gene_synonym="F18E5.70; F18E5_70"
/inference="Similar to RNA sequence,
EST:INSD:ES004635.1,INSD:ES204740.1,INSD:DR327785.1,
INSD:DR327794.1,INSD:DR327784.1,INSD:DR327781.1,
INSD:EG440689.1,INSD:EL239901.1,INSD:EL059034.1,
INSD:EH827409.1,INSD:EL308947.1,INSD:DR327790.1,
INSD:EL226258.1,INSD:EL291948.1,INSD:EL216514.1,
INSD:ES151928.1,INSD:EL260150.1,INSD:DR327795.1,
INSD:EL046774.1,INSD:EL331872.1,INSD:DR327780.1,
INSD:DR327783.1,INSD:AV812411.1,INSD:ES189071.1,
INSD:DR327782.1,INSD:EG499324.1,INSD:ES055398.1,
INSD:ES037576.1,INSD:ES155089.1,INSD:DR327788.1,
INSD:EL108874.1,INSD:EL972800.1,INSD:DR327798.1,
INSD:EH824813.1,INSD:ES192567.1,INSD:EL158704.1,
INSD:ES205513.1,INSD:EL097675.1,INSD:DR327793.1,
INSD:EL088674.1,INSD:DR327787.1,INSD:EL975846.1,
INSD:T04787.1,INSD:EL081420.1,INSD:ES034719.1,
INSD:ES191855.1,INSD:BE845002.1,INSD:EL093269.1,
INSD:ES130876.1,INSD:ES005966.1,INSD:DR327779.1,
INSD:ES053252.1,INSD:DR327791.1,INSD:DR327789.1,
INSD:ES138232.1,INSD:ES198482.1,INSD:EG499325.1,
INSD:EH867054.1,INSD:ES080299.1,INSD:EL213337.1,
INSD:DR327777.1,INSD:EL971098.1,INSD:ES128716.1,
INSD:EG464126.1,INSD:DR327778.1,INSD:ES113135.1,
INSD:EL072465.1,INSD:EL316797.1,INSD:EH981298.1,
INSD:DR327792.1,INSD:ES152693.1,INSD:ES176749.1,
INSD:EL034693.1,INSD:EL011234.1,INSD:DR327797.1,
INSD:EL151098.1,INSD:DR327786.1,INSD:EL031739.1,
INSD:EL279644.1,INSD:EL312570.1,INSD:ES203047.1,
INSD:AA651401.1,INSD:ES119643.1,INSD:ES030895.1,
INSD:ES216102.1,INSD:ES107833.1,INSD:ES091339.1,
INSD:EL042658.1,INSD:EL326704.1,INSD:ES161243.1,
INSD:BP625137.1,INSD:EL981761.1,INSD:EL263836.1,
INSD:H37091.1"
/note="PapD-like superfamily protein; FUNCTIONS IN:
structural molecule activity; INVOLVED IN:
biological_process unknown; LOCATED IN: plasma membrane;
EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13
growth stages; CONTAINS InterPro DOMAIN/s: PapD-like
(InterPro:IPR008962), Major sperm protein
(InterPro:IPR000535); BEST Arabidopsis thaliana protein
match is: PapD-like superfamily protein
(TAIR:AT4G05060.1); Has 35333 Blast hits to 34131 proteins
in 2444 species: Archae - 798; Bacteria - 22429; Metazoa -
974; Fungi - 991; Plants - 531; Viruses - 0; Other
Eukaryotes - 9610 (source: NCBI BLink)."
/codon_start=1
/product="PapD-like superfamily protein"
/protein_id="NP_974584.1"
/db_xref="GeneID:826300"
/db_xref="TAIR:AT4G21450"
/db_xref="Araport:AT4G21450"
/translation="MTMTEEKPTSDGKGGWGFFKIPFRNSSGHRNAASSAATSPFPSG
ASSSSTSSHLHNHHQHHHQHHHQHHHQLGYNGPHGDGSGQNQHPTPSPSVSSVAKSFL
PTKRRLKLDPSEKLYFPYEPGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAI
LAPGETIIATVFKFVEPPENNEKPMDQRSRVKFKIMSLKVKGPMDYVPELVC"
ORIGIN
1 taaatccact tctctctcac catctcacgt ccgatctctc ctctctgagc tctcatcacg
61 agtcaacccc tttctccgtc gaaattcgca tgcttaaact ctgagagaag aagatgacta
121 tgacggagga gaaaccaact tccgacggca aaggaggttg gggtttcttc aagattccat
181 ttcgtaactc aagcggtcac agaaacgccg cttcaagtgc tgctacttct ccgtttccat
241 ctggagcttc ttcttcttct acttcttctc atctacataa ccatcatcaa catcatcatc
301 aacatcacca tcagcaccat catcagcttg gttataacgg tcctcacggt gatggatcgg
361 gtcaaaatca acatccgact ccttctcctt cagtttcatc tgttgctaag tcttttcttc
421 ctactaaacg aagattgaag cttgatcctt ctgagaaact ctattttcct tatgagcctg
481 ggaagcaagt taggagtgct attaagatta aaaatacaag caaatcacat gtagccttca
541 agtttcaaac aactgcgccg aagagttgct ttatgcgtcc acctggtgct attcttgctc
601 ctggagagac tattattgct actgtgttta aatttgttga gcctcctgag aataatgaga
661 agccaatgga tcaaaggagc agagtgaagt ttaaaatcat gagcctgaag gtgaaaggtc
721 caatggacta tgtgcctgag ctggtatgtt gatcttctga tcttatctat tagctgatct
781 ttgaacatga aaacagtagt aacatatccg aatccagata gaacataaga tattgaccca
841 tctctaaaac ataagatatc aatgactaga ctaagaatgt gttttggtct gagtagaggt
901 ttccagttac cttttaaggc acaaacatat aaccaagcat tccactgaat gctgtttcca
961 tctaaaagac atatcgattg cttttgtttt tgtttttttc tcagttcgat gagcaaaagg
1021 atgatgtctc taaggagcaa atattgcgtg tgattttctt ggatcctgag cgctccaacc
1081 ctgcattgga aaaactgaag cgtcaattag cagaagcgga tgcagcggtg gaggcacgaa
1141 agaaacctcc agaggaaaca ggtccaaaga tgattggaga agggcttgtg atcgatgaat
1201 ggaaggagcg tagagagaga tatcttgcac agcaacaagg cgaaggagct gactctgtct
1261 gagagactaa aagagttttc tcaggacaaa aacaagtgcg cttgtgaaga tgaagaagaa
1321 gggaccgcta tattgaattt atatgctaac ttctagattc atgatgcaat atataaggat
1381 catgctggta aaaaaaaaag acaatgaagg aaactttttt catgtaaaaa agaaatgtaa
1441 acttgggttt gatgataatg aattgttcat gttaaggact
//