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Arabidopsis thaliana TGF-beta receptor interacting protein 1 (TRIP-1), mRNA

NCBI Reference Sequence: NM_201968.1

FASTA Graphics 

LOCUS       NM_201968               1391 bp    mRNA    linear   PLN 20-OCT-2022
DEFINITION  Arabidopsis thaliana TGF-beta receptor interacting protein 1
            (TRIP-1), mRNA.
ACCESSION   NM_201968
VERSION     NM_201968.1
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (bases 1 to 1391)
  AUTHORS   Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
            Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
            Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
            Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
            Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
            Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
            Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
            Venter,J.C.
  TITLE     Sequence and analysis of chromosome 2 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 402 (6763), 761-768 (1999)
   PUBMED   10617197
REFERENCE   2  (bases 1 to 1391)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 1391)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (bases 1 to 1391)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            This record is derived from an annotated genomic sequence
            (NC_003071).
FEATURES             Location/Qualifiers
     source          1..1391
                     /organism="Arabidopsis thaliana"
                     /mol_type="mRNA"
                     /db_xref="taxon:3702"
                     /chromosome="2"
                     /ecotype="Columbia"
     gene            1..1391
                     /gene="TRIP-1"
                     /locus_tag="AT2G46280"
                     /gene_synonym="T3F17.7; TGF-beta receptor interacting
                     protein 1; TIF3I1; TRIP1"
                     /note="Encodes a homolog of mammalian TGF-beta receptor
                     interacting protein. Co-immunoprecipitates with BRI1 and
                     can be phosphorylated in vitro by BRI1 at specific sites
                     (Thr-14, Thr-89, and either Thr-197 or Ser-198). May
                     therefore be a cytoplasmic BRI1 substrate and involved in
                     brassinosteroid regulated plant growth and development.The
                     encoded protein has two DWD motifs. It can bind to DDB1a
                     in Y2H assays, and DDB1b in co-IP assays, and may be
                     involved in the formation of a CUL4-based E3 ubiquitin
                     ligase"
                     /db_xref="Araport:AT2G46280"
                     /db_xref="GeneID:819236"
                     /db_xref="TAIR:AT2G46280"
     CDS             113..877
                     /gene="TRIP-1"
                     /locus_tag="AT2G46280"
                     /gene_synonym="T3F17.7; TGF-beta receptor interacting
                     protein 1; TIF3I1; TRIP1"
                     /inference="Similar to RNA sequence,
                     EST:INSD:ES097048.1,INSD:BP608406.1,INSD:EG507970.1,
                     INSD:BP787122.1,INSD:T43639.1,INSD:ES072620.1,
                     INSD:ES103926.1,INSD:ES000930.1,INSD:BP816025.1,
                     INSD:EL967575.1,INSD:EL288818.1,INSD:ES213454.1,
                     INSD:ES104997.1,INSD:EG507968.1,INSD:BP836400.1,
                     INSD:AV519843.1,INSD:EG525460.1,INSD:EL200933.1,
                     INSD:BE528297.1,INSD:DR341733.1,INSD:DR338947.1,
                     INSD:Z29843.1,INSD:ES212676.1,INSD:Z27253.1,
                     INSD:ES085402.1,INSD:ES024276.1,INSD:EH862346.1,
                     INSD:BX839213.1,INSD:EG507980.1,INSD:ES114267.1,
                     INSD:ES213132.1,INSD:T75627.1,INSD:BU635558.1,
                     INSD:BP575591.1,INSD:EH970443.1,INSD:DR341727.1,
                     INSD:DR341730.1,INSD:N38091.1,INSD:DR338940.1,
                     INSD:EL991558.1,INSD:ES124998.1,INSD:EL292588.1,
                     INSD:ES092075.1,INSD:BP563630.1,INSD:BP635577.1,
                     INSD:EL968794.1,INSD:BP578632.1,INSD:ES068248.1,
                     INSD:ES125442.1,INSD:ES058310.1,INSD:ES166556.1,
                     INSD:ES009477.1,INSD:CB258224.1,INSD:ES199902.1,
                     INSD:ES197297.1,INSD:AV541154.1,INSD:ES046587.1,
                     INSD:EH818492.1,INSD:BP577453.1,INSD:BP824022.1,
                     INSD:T13850.1,INSD:DR338951.1,INSD:AV535977.1,
                     INSD:EH899824.1,INSD:ES104922.1,INSD:T46040.1,
                     INSD:H36544.1,INSD:DR341729.1,INSD:BP646863.1,
                     INSD:ES072383.1,INSD:EL063884.1,INSD:ES179895.1,
                     INSD:BP783282.1,INSD:BP821034.1,INSD:ES087895.1,
                     INSD:ES002318.1,INSD:BP840984.1,INSD:ES077078.1,
                     INSD:EH833723.1,INSD:EL991813.1,INSD:BP571398.1,
                     INSD:EL998518.1,INSD:BP625974.1,INSD:EG507981.1,
                     INSD:DR338934.1,INSD:BP581863.1,INSD:DR341735.1,
                     INSD:EL251806.1,INSD:ES203396.1,INSD:EL142644.1,
                     INSD:ES008089.1,INSD:EL994666.1,INSD:BP779814.1,
                     INSD:DR341734.1,INSD:ES145281.1,INSD:DR341732.1,
                     INSD:ES090367.1,INSD:ES055958.1,INSD:EL269432.1,
                     INSD:ES027604.1,INSD:ES148773.1,INSD:EH923267.1,
                     INSD:EL053500.1,INSD:ES079122.1,INSD:ES003433.1,
                     INSD:DR341731.1,INSD:EL181082.1,INSD:ES083019.1,
                     INSD:EH823509.1,INSD:BP662552.1,INSD:EL977379.1,
                     INSD:DR381529.1,INSD:EL112691.1,INSD:EH962264.1,
                     INSD:DR341736.1,INSD:AV825831.2,INSD:EG507969.1,
                     INSD:AV530377.1,INSD:EG507971.1"
                     /note="TGF-beta receptor interacting protein 1 (TRIP-1);
                     FUNCTIONS IN: protein binding, nucleotide binding;
                     INVOLVED IN: response to cadmium ion, response to salt
                     stress; LOCATED IN: CUL4 RING ubiquitin ligase complex;
                     EXPRESSED IN: male gametophyte, guard cell, root, cultured
                     cell, pollen tube; EXPRESSED DURING: L mature pollen
                     stage, M germinated pollen stage; CONTAINS InterPro
                     DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat,
                     conserved site (InterPro:IPR019775), WD40 repeat
                     (InterPro:IPR001680), G-protein beta WD-40 repeat, region
                     (InterPro:IPR020472), WD40 repeat-like-containing domain
                     (InterPro:IPR011046), WD40-repeat-containing domain
                     (InterPro:IPR017986), WD40/YVTN repeat-like-containing
                     domain (InterPro:IPR015943), WD40 repeat, subgroup
                     (InterPro:IPR019781); BEST Arabidopsis thaliana protein
                     match is: Transducin/WD40 repeat-like superfamily protein
                     (TAIR:AT2G46290.1); Has 35333 Blast hits to 34131 proteins
                     in 2444 species: Archae - 798; Bacteria - 22429; Metazoa -
                     974; Fungi - 991; Plants - 531; Viruses - 0; Other
                     Eukaryotes - 9610 (source: NCBI BLink)."
                     /codon_start=1
                     /product="TGF-beta receptor interacting protein 1"
                     /protein_id="NP_973697.1"
                     /db_xref="Araport:AT2G46280"
                     /db_xref="GeneID:819236"
                     /db_xref="TAIR:AT2G46280"
                     /translation="MRPILMKGHERPLTFLRYNREGDLLFSCAKDHTPTLWFADNGER
                     LGTYRGHNGAVWCCDVSRDSSRLITGSADQTAKLWDVKSGKELFTFKFNAPTRSVDFA
                     VGDRLAVITTDHFVDRTAAIHVKRIAEDPEEQDAESVLVLHCPDGKKRINRAVWGPLN
                     QTIVSGGEDKVIRIWDAETGKLLKQSDEEVGHKKDITSLCKAADDSHFLTGSLDKTAK
                     LWDMRTLTLLKTYTTVVPVNAVSLSPLLNHVCTNAS"
ORIGIN      
        1 gaagaagaaa gccgttttcc gtaatcgttt cttcaattat ttttcttgtc ttttgattga
       61 ttcgatttcg tatctgtttc aaagattcgc atcaaaccct aagaaactga agatgaggcc
      121 gatcctgatg aagggacatg aacgtccatt gacgtttctg aggtacaaca gagaaggaga
      181 tctgcttttc tcctgcgcca aggaccacac acccaccctc tggtttgccg ataacggcga
      241 gcgccttgga acttaccgtg gtcacaacgg tgctgtttgg tgctgtgatg tctcccgaga
      301 ctcgtcaaga ttgatcactg gtagtgctga tcagactgca aagctgtggg atgtaaaatc
      361 tggaaaagaa ttgttcactt tcaagtttaa tgcccctacg aggtctgtgg atttcgctgt
      421 tggagatcgt cttgcagtga ttaccactga tcacttcgtg gaccgtaccg ctgctattca
      481 tgtgaagcgt attgcggaag atcctgagga acaggatgct gagtctgtgc ttgtccttca
      541 ttgtcctgat ggaaagaaga ggatcaatag agctgtttgg ggtcccctga accaaactat
      601 tgttagtggt ggtgaagata aagttatcag aatctgggat gccgagacgg gaaaattgct
      661 caagcaatca gatgaggaag tgggtcacaa gaaggacatt acatcgctct gcaaagcagc
      721 tgatgactct cacttcctta caggttcact tgacaaaact gcaaagcttt gggacatgag
      781 aacgctgact cttcttaaga cttacaccac tgtggtgccc gtaaatgctg tctccctgtc
      841 tccacttctc aaccatgtat gcactaatgc ttcatgaaat tcaatttcga atcccagaat
      901 cagcaaggca tgatgttatc tttgtgaatg tttctgctct ctcttttagg ttgtacttgg
      961 aggtggtcaa gatgcatcag ctgtgactac cactgatcat cgtgctggaa agtttgaagc
     1021 taagttttac gacaagattc tgcaagagga aattggtggt gtgaaaggtc attttggacc
     1081 tataaatgct ttggcattca atcctgatgg gaagagtttc tctagtggag gtgaagacgg
     1141 ttacgtgagg ctgcatcatt ttgactccga ctacttcaac atcaagattt agattccgac
     1201 tacttgaacg tcaacctttt agaatctttg aaaaagtctc ccattccgga ttttgttttc
     1261 tctctctttt aacattttca tgtttttatt tactaccaat acaaatacct tgatgataaa
     1321 gcttttgaat tttgacagaa tctttagttt tcatttccag agttctcagt acaagttaat
     1381 taacctgctc t
//
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