LOCUS NM_201968 1391 bp mRNA linear PLN 20-OCT-2022
DEFINITION Arabidopsis thaliana TGF-beta receptor interacting protein 1
(TRIP-1), mRNA.
ACCESSION NM_201968
VERSION NM_201968.1
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 1391)
AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
Venter,J.C.
TITLE Sequence and analysis of chromosome 2 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 761-768 (1999)
PUBMED 10617197
REFERENCE 2 (bases 1 to 1391)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 1391)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (bases 1 to 1391)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
This record is derived from an annotated genomic sequence
(NC_003071).
FEATURES Location/Qualifiers
source 1..1391
/organism="Arabidopsis thaliana"
/mol_type="mRNA"
/db_xref="taxon:3702"
/chromosome="2"
/ecotype="Columbia"
gene 1..1391
/gene="TRIP-1"
/locus_tag="AT2G46280"
/gene_synonym="T3F17.7; TGF-beta receptor interacting
protein 1; TIF3I1; TRIP1"
/note="Encodes a homolog of mammalian TGF-beta receptor
interacting protein. Co-immunoprecipitates with BRI1 and
can be phosphorylated in vitro by BRI1 at specific sites
(Thr-14, Thr-89, and either Thr-197 or Ser-198). May
therefore be a cytoplasmic BRI1 substrate and involved in
brassinosteroid regulated plant growth and development.The
encoded protein has two DWD motifs. It can bind to DDB1a
in Y2H assays, and DDB1b in co-IP assays, and may be
involved in the formation of a CUL4-based E3 ubiquitin
ligase"
/db_xref="Araport:AT2G46280"
/db_xref="GeneID:819236"
/db_xref="TAIR:AT2G46280"
CDS 113..877
/gene="TRIP-1"
/locus_tag="AT2G46280"
/gene_synonym="T3F17.7; TGF-beta receptor interacting
protein 1; TIF3I1; TRIP1"
/inference="Similar to RNA sequence,
EST:INSD:ES097048.1,INSD:BP608406.1,INSD:EG507970.1,
INSD:BP787122.1,INSD:T43639.1,INSD:ES072620.1,
INSD:ES103926.1,INSD:ES000930.1,INSD:BP816025.1,
INSD:EL967575.1,INSD:EL288818.1,INSD:ES213454.1,
INSD:ES104997.1,INSD:EG507968.1,INSD:BP836400.1,
INSD:AV519843.1,INSD:EG525460.1,INSD:EL200933.1,
INSD:BE528297.1,INSD:DR341733.1,INSD:DR338947.1,
INSD:Z29843.1,INSD:ES212676.1,INSD:Z27253.1,
INSD:ES085402.1,INSD:ES024276.1,INSD:EH862346.1,
INSD:BX839213.1,INSD:EG507980.1,INSD:ES114267.1,
INSD:ES213132.1,INSD:T75627.1,INSD:BU635558.1,
INSD:BP575591.1,INSD:EH970443.1,INSD:DR341727.1,
INSD:DR341730.1,INSD:N38091.1,INSD:DR338940.1,
INSD:EL991558.1,INSD:ES124998.1,INSD:EL292588.1,
INSD:ES092075.1,INSD:BP563630.1,INSD:BP635577.1,
INSD:EL968794.1,INSD:BP578632.1,INSD:ES068248.1,
INSD:ES125442.1,INSD:ES058310.1,INSD:ES166556.1,
INSD:ES009477.1,INSD:CB258224.1,INSD:ES199902.1,
INSD:ES197297.1,INSD:AV541154.1,INSD:ES046587.1,
INSD:EH818492.1,INSD:BP577453.1,INSD:BP824022.1,
INSD:T13850.1,INSD:DR338951.1,INSD:AV535977.1,
INSD:EH899824.1,INSD:ES104922.1,INSD:T46040.1,
INSD:H36544.1,INSD:DR341729.1,INSD:BP646863.1,
INSD:ES072383.1,INSD:EL063884.1,INSD:ES179895.1,
INSD:BP783282.1,INSD:BP821034.1,INSD:ES087895.1,
INSD:ES002318.1,INSD:BP840984.1,INSD:ES077078.1,
INSD:EH833723.1,INSD:EL991813.1,INSD:BP571398.1,
INSD:EL998518.1,INSD:BP625974.1,INSD:EG507981.1,
INSD:DR338934.1,INSD:BP581863.1,INSD:DR341735.1,
INSD:EL251806.1,INSD:ES203396.1,INSD:EL142644.1,
INSD:ES008089.1,INSD:EL994666.1,INSD:BP779814.1,
INSD:DR341734.1,INSD:ES145281.1,INSD:DR341732.1,
INSD:ES090367.1,INSD:ES055958.1,INSD:EL269432.1,
INSD:ES027604.1,INSD:ES148773.1,INSD:EH923267.1,
INSD:EL053500.1,INSD:ES079122.1,INSD:ES003433.1,
INSD:DR341731.1,INSD:EL181082.1,INSD:ES083019.1,
INSD:EH823509.1,INSD:BP662552.1,INSD:EL977379.1,
INSD:DR381529.1,INSD:EL112691.1,INSD:EH962264.1,
INSD:DR341736.1,INSD:AV825831.2,INSD:EG507969.1,
INSD:AV530377.1,INSD:EG507971.1"
/note="TGF-beta receptor interacting protein 1 (TRIP-1);
FUNCTIONS IN: protein binding, nucleotide binding;
INVOLVED IN: response to cadmium ion, response to salt
stress; LOCATED IN: CUL4 RING ubiquitin ligase complex;
EXPRESSED IN: male gametophyte, guard cell, root, cultured
cell, pollen tube; EXPRESSED DURING: L mature pollen
stage, M germinated pollen stage; CONTAINS InterPro
DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat,
conserved site (InterPro:IPR019775), WD40 repeat
(InterPro:IPR001680), G-protein beta WD-40 repeat, region
(InterPro:IPR020472), WD40 repeat-like-containing domain
(InterPro:IPR011046), WD40-repeat-containing domain
(InterPro:IPR017986), WD40/YVTN repeat-like-containing
domain (InterPro:IPR015943), WD40 repeat, subgroup
(InterPro:IPR019781); BEST Arabidopsis thaliana protein
match is: Transducin/WD40 repeat-like superfamily protein
(TAIR:AT2G46290.1); Has 35333 Blast hits to 34131 proteins
in 2444 species: Archae - 798; Bacteria - 22429; Metazoa -
974; Fungi - 991; Plants - 531; Viruses - 0; Other
Eukaryotes - 9610 (source: NCBI BLink)."
/codon_start=1
/product="TGF-beta receptor interacting protein 1"
/protein_id="NP_973697.1"
/db_xref="Araport:AT2G46280"
/db_xref="GeneID:819236"
/db_xref="TAIR:AT2G46280"
/translation="MRPILMKGHERPLTFLRYNREGDLLFSCAKDHTPTLWFADNGER
LGTYRGHNGAVWCCDVSRDSSRLITGSADQTAKLWDVKSGKELFTFKFNAPTRSVDFA
VGDRLAVITTDHFVDRTAAIHVKRIAEDPEEQDAESVLVLHCPDGKKRINRAVWGPLN
QTIVSGGEDKVIRIWDAETGKLLKQSDEEVGHKKDITSLCKAADDSHFLTGSLDKTAK
LWDMRTLTLLKTYTTVVPVNAVSLSPLLNHVCTNAS"
ORIGIN
1 gaagaagaaa gccgttttcc gtaatcgttt cttcaattat ttttcttgtc ttttgattga
61 ttcgatttcg tatctgtttc aaagattcgc atcaaaccct aagaaactga agatgaggcc
121 gatcctgatg aagggacatg aacgtccatt gacgtttctg aggtacaaca gagaaggaga
181 tctgcttttc tcctgcgcca aggaccacac acccaccctc tggtttgccg ataacggcga
241 gcgccttgga acttaccgtg gtcacaacgg tgctgtttgg tgctgtgatg tctcccgaga
301 ctcgtcaaga ttgatcactg gtagtgctga tcagactgca aagctgtggg atgtaaaatc
361 tggaaaagaa ttgttcactt tcaagtttaa tgcccctacg aggtctgtgg atttcgctgt
421 tggagatcgt cttgcagtga ttaccactga tcacttcgtg gaccgtaccg ctgctattca
481 tgtgaagcgt attgcggaag atcctgagga acaggatgct gagtctgtgc ttgtccttca
541 ttgtcctgat ggaaagaaga ggatcaatag agctgtttgg ggtcccctga accaaactat
601 tgttagtggt ggtgaagata aagttatcag aatctgggat gccgagacgg gaaaattgct
661 caagcaatca gatgaggaag tgggtcacaa gaaggacatt acatcgctct gcaaagcagc
721 tgatgactct cacttcctta caggttcact tgacaaaact gcaaagcttt gggacatgag
781 aacgctgact cttcttaaga cttacaccac tgtggtgccc gtaaatgctg tctccctgtc
841 tccacttctc aaccatgtat gcactaatgc ttcatgaaat tcaatttcga atcccagaat
901 cagcaaggca tgatgttatc tttgtgaatg tttctgctct ctcttttagg ttgtacttgg
961 aggtggtcaa gatgcatcag ctgtgactac cactgatcat cgtgctggaa agtttgaagc
1021 taagttttac gacaagattc tgcaagagga aattggtggt gtgaaaggtc attttggacc
1081 tataaatgct ttggcattca atcctgatgg gaagagtttc tctagtggag gtgaagacgg
1141 ttacgtgagg ctgcatcatt ttgactccga ctacttcaac atcaagattt agattccgac
1201 tacttgaacg tcaacctttt agaatctttg aaaaagtctc ccattccgga ttttgttttc
1261 tctctctttt aacattttca tgtttttatt tactaccaat acaaatacct tgatgataaa
1321 gcttttgaat tttgacagaa tctttagttt tcatttccag agttctcagt acaagttaat
1381 taacctgctc t
//