U.S. flag

An official website of the United States government

PREDICTED: Rattus norvegicus uroporphyrinogen decarboxylase (Urod), transcript variant X1, mRNA

NCBI Reference Sequence: XM_039109371.2

FASTA Graphics 

LOCUS       XM_039109371             973 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus uroporphyrinogen decarboxylase (Urod),
            transcript variant X1, mRNA.
ACCESSION   XM_039109371
VERSION     XM_039109371.2
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086023) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Feb 22, 2024 this sequence version replaced XM_039109371.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..973
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..973
                     /gene="Urod"
                     /gene_synonym="porphyrinogen carboxy-lyase"
                     /note="uroporphyrinogen decarboxylase; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 37 ESTs, 83 long SRA reads, 1 Protein"
                     /db_xref="GeneID:29421"
                     /db_xref="RGD:3946"
     CDS             83..901
                     /gene="Urod"
                     /gene_synonym="porphyrinogen carboxy-lyase"
                     /codon_start=1
                     /product="uroporphyrinogen decarboxylase isoform X1"
                     /protein_id="XP_038965299.1"
                     /db_xref="GeneID:29421"
                     /db_xref="RGD:3946"
                     /translation="MEVTMVPGKGPSFPEPLREERDLERLRDPAAVASELGYVFQAIT
                     LTRQQLAGRVPLIGFAGAPWTLMTYMVEGGSSSTMAQAKRWLYQKPLASHKLLGILTD
                     ALVPYLIGQVAAGAQALQLFESHAGHLGSELFSKFALPYIRDVAKRVKAGLQKAGLAP
                     VPMIIFAKDGHFALEELAQAGYEVVGLDWTVAPKKARERVGKTVTLQGNLDPCALYAS
                     EEEIGRLVQQMLNDFGPQRYIANLGHGLYPDMDPEHVGAFVDAVHKHSRLLRQN"
     polyA_site      973
                     /gene="Urod"
                     /gene_synonym="porphyrinogen carboxy-lyase"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 atgctgctat aattttctct gacatccttg ttgtacccca ggttgtgtac ccagatattt
       61 tatccccctt aaggcactgg gcatggaggt gaccatggta cctggcaaag gacccagctt
      121 tccagagcca ttaagagaag agcgggactt agagcgtcta cgggatccag cagcagtggc
      181 ttcagagtta ggctatgtgt tccaagccat cacccttacc cgacaacagc tggctggacg
      241 tgtgccactg attggctttg ctggtgctcc gtggaccctg atgacgtaca tggttgaagg
      301 cggcagttca agtaccatgg ctcaggccaa gcgatggctc tatcagaagc cactggccag
      361 tcacaagctg cttggcatac tcactgatgc tctggtccca tatctaatag gacaagtagc
      421 tgctggtgct caggcattgc agctctttga gtcccacgca ggacatcttg gctccgagct
      481 cttcagcaag tttgcactgc cttacatccg tgatgtggcc aagcgagtga aggctgggtt
      541 gcagaaggcg ggcctggcac cagtgcccat gatcatcttt gccaaggatg gacattttgc
      601 cctggaagag ctggcccagg ctggctatga ggtagttgga cttgactgga cagtggctcc
      661 aaagaaagcc cgggaacgtg ttggaaagac agtgactctg caggggaacc tggatccctg
      721 tgccctgtat gcatctgagg aagagattgg tcgactggtg cagcagatgc tgaatgactt
      781 tgggccacag cgctacattg ctaacctagg gcatgggctt taccctgaca tggacccaga
      841 acacgtagga gcctttgtgg atgcagtaca caaacactca cgcctgcttc gacagaattg
      901 agtatgtgct tttctgctca agtaccaccg acacagattg tttccaggag aataaaactt
      961 ccagaaactt cca
//
Feature
Display: FASTA GenBank Help
Details

Supplemental Content

Change region shown

Customize view

Reference sequence information

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
External link. Please review our privacy policy.