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PREDICTED: Rattus norvegicus FHF complex subunit HOOK interacting protein 2B (Fhip2b), transcript variant X3, mRNA

NCBI Reference Sequence: XM_039093354.2

FASTA Graphics 

LOCUS       XM_039093354            3810 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus FHF complex subunit HOOK interacting
            protein 2B (Fhip2b), transcript variant X3, mRNA.
ACCESSION   XM_039093354
VERSION     XM_039093354.2
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086033) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Feb 22, 2024 this sequence version replaced XM_039093354.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3810
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="15"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..3810
                     /gene="Fhip2b"
                     /gene_synonym="Fam160b2; Rai16"
                     /note="FHF complex subunit HOOK interacting protein 2B;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 9 ESTs, 102 long SRA reads, 3 Proteins"
                     /db_xref="GeneID:306015"
                     /db_xref="RGD:1308870"
     CDS             209..2269
                     /gene="Fhip2b"
                     /gene_synonym="Fam160b2; Rai16"
                     /codon_start=1
                     /product="FHF complex subunit HOOK-interacting protein 2B
                     isoform X2"
                     /protein_id="XP_038949282.1"
                     /db_xref="GeneID:306015"
                     /db_xref="RGD:1308870"
                     /translation="MLDILVYEEKQQASSGEAGPCLEYLLQHKILETLCTLGKAEYPP
                     GMRQQVFQFFSKVLAQVQHPLLHYLSVHRPVQKLLRLGGTAPGSLTEKEEVQFTSVLC
                     SKIQQDPELLAYILEGKKMIGKKKTARGSAAPPKDIAGYRDKDCPHSDAPSGDPGLDK
                     EYHGVPALSVHLPAVTEGPESGPGESNLITSLLGLCKSKKSRLALKAQENILLLVSLA
                     SPAAATYLTQSTSCCTAIAEHLCQLYRSMPACLDPADIATLEGISWRLPSAPSDETAF
                     PGKEALAAFLGWFDYCDHLITEAHTVVADALARAVAEKLFVETLQPQLLHVSEQSILT
                     STALLTVLLRQLRSPALLQEAMTFLLGTDQQPASKEDSSHTLGTHLIMHCDHLSDEIS
                     IATLRLFEELLQKPHERAIRSLVLQNLEGRLYVARGSPEPESYEDNLDLEEDPYFTDG
                     FLDSGLQPSTKPPPAPATSSDGKTAVTEIVNSFLCLVPEEAKTSAFLEENGYDTYVHD
                     AYGLFQECSSRVAHWGWPLGPAPLDSHEPERPFFEGRFLQVLFDRIARILDQPYSLNL
                     QVTSVLSRLALFPHPHIHEYLLDPYISLAPGCRSLFSVLVRVIGDLMQRIQRVPQFSG
                     KLLLVRKQLMGQIPGEHLDHQTLLQGVVVLEEFCKELAAIAFVKFPPHGPYLNFSPPP
                     EGQV"
     polyA_site      3810
                     /gene="Fhip2b"
                     /gene_synonym="Fam160b2; Rai16"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 ctgggagcag gagttcccgc actgagttcc ctcttagcat gggagttgcg gtcctgagtg
       61 acataagtcc tcaggaaagc gggagcccag cattgacctg ctgcaggcct tcgtagagca
      121 ttggaaaggc atcacacact actatatcga gagcacagat gaaaacaccc cagccaagaa
      181 aacagatatc ccctggcgac tgaagcagat gttggacatc ctggtgtatg aggagaagca
      241 gcaggcatcc tctggtgagg ctggaccctg tctggaatac ttgctacaac acaagatcct
      301 ggagaccctg tgcactctgg gcaaagcgga gtatccccca ggcatgcggc agcaggtatt
      361 ccagttcttc agcaaggtcc tggcccaggt gcagcacccc ctgctacact acctgagtgt
      421 ccacagaccc gtgcagaaac ttctccgact tggaggaaca gcccctggat ccctcaccga
      481 aaaggaagaa gttcagttca ccagtgtcct ttgctctaag atacagcagg atccagagct
      541 gctggcctac attctggaag gtaaaaagat gataggtaag aagaagacag ccagagggtc
      601 tgcagctcca cctaaagaca tagccggcta cagggacaag gactgtcccc acagcgatgc
      661 tcccagtggg gatcctggac tagataagga ataccatggt gtcccagcct tgagcgtcca
      721 cctgcctgct gtgactgagg ggccagaaag tgggcccggg gagagcaatc tcatcacctc
      781 cctgcttggg ctgtgcaaga gcaagaagag tcgactggcc ctgaaggcac aggagaacat
      841 attgctgctg gtaagcctgg cctcaccagc agctgccacc tacctgacac aaagtacctc
      901 ctgttgtacg gcgatagctg agcacctttg ccaactgtac cggtccatgc cagcctgcct
      961 tgacccagca gacattgcca ctttagaggg catcagttgg aggttaccaa gtgccccatc
     1021 tgatgaaacc gctttccctg gcaaggaggc tctggctgcc ttcctgggct ggtttgatta
     1081 ctgcgaccac cttatcacag aggcacacac ggtggttgca gatgccttgg caagggccgt
     1141 ggctgagaag ctgtttgtag agaccctgca gccccagctc ctgcacgtgt ctgagcagag
     1201 catcttaacc tccactgccc tgttgacagt cctgctccgt cagctgcgct cccctgctct
     1261 gctgcaggag gccatgacct tcctcttagg cactgaccag cagcctgcat ccaaggagga
     1321 cagttcccat actctgggca cacacctcat catgcactgt gaccatctct ctgacgagat
     1381 cagcattgcc actctgaggc tgtttgagga gctgctgcag aaaccccatg agcgagccat
     1441 ccgcagtttg gttctgcaga accttgaggg ccgcctgtat gtggcccggg gctcgccaga
     1501 gccagagagc tatgaggata acctggatct ggaggaagac ccctacttca ccgatggctt
     1561 ccttgattct ggccttcaac cctccacaaa gcctccccca gctcctgcca ccagttcaga
     1621 tggcaaaaca gcagtgacgg agattgttaa cagcttcctt tgcctggtcc ctgaggaagc
     1681 caagacatca gccttcctgg aggagaatgg atatgacaca tatgtccacg atgcctacgg
     1741 cctgttccag gaatgcagct cccgtgtggc ccactggggt tggcccctgg gtccagcacc
     1801 cttggactct catgagcctg aaaggccctt ctttgagggc cgcttcctcc aagtgctctt
     1861 cgatcgaatt gcccggattt tggaccagcc ttacagcctg aacctacaag tgacctcagt
     1921 cctgtcccgg ctcgccctgt tcccccaccc ccatatccat gagtacctcc tggatcccta
     1981 catcagcctg gcccctggct gcaggagcct gttctctgtg cttgtcaggg tgatcggtga
     2041 cttaatgcaa agaattcaga gggtacccca gttttcaggc aaactgctcc tggtgcgcaa
     2101 gcaactgatg ggccagattc ccggagagca tctggaccat cagaccctac tccagggcgt
     2161 ggtagttctt gaggaattct gcaaggagct ggctgccatt gcgtttgtca agtttccccc
     2221 acatggtcct tacctgaact tctctccacc tccagaaggg caagtctgag ccaggagcat
     2281 gatgggtggg ggaagactcc tgcctgtact tctgcccacg ggcagtctcc tgcctggcca
     2341 tgctgtcact cagtcctcca tgtggggact tcggccacag acctcacctg ttgacatgag
     2401 ctgaagtttc agggaggttc tggcttctaa ggcactggtg ttcttagagc cttctgagag
     2461 tagctggagg acggccagtg agcgcctaga tgttgccctg catgtgtttc gtgactatct
     2521 ctgctatact gtgaccaggg ccacaacaca agatagctcc aggggcaagg gaaatgaact
     2581 gctgcttttg aggctggcta aaactccagt ccggagagat aggtggccaa gaaccctgtc
     2641 tgttacgtta ggtatcatgg aagctgctga gactgggcag gtttctccat ggcttcatca
     2701 acagtagtga aggagacaga gaagggaact gagggggagc cccctcttcc tgctctaccc
     2761 tcctggagac tgttgcaaaa tttccaactg cctcatggca gatgcccaaa gtattctctg
     2821 tgcccaggcg ggggcagctg ctaaccagag ctttggcgca gctgcagcca gggcaggcga
     2881 gagcctggga gctgggagct gggtgccagg ttccagctcc agctggttcc tctctggcgc
     2941 cttctgaacc cgtctcggca agtcggaaac acctgggcag agaggtcatt gaccaggggt
     3001 ggtgggcctt gccctcagaa tcttgcccaa cccccaggga tcctagtgga attcgatcct
     3061 ggggagcata ggaactcaag gtacagatgg gaacgggcac cccaacccca gactcctgaa
     3121 gctagtaagg ataggctgag acacaagcag atagatagct ctggtattgt tcttcctatg
     3181 tcctccatgg ctggggctgc taccccaccc ggcctgaatc tgtctcgacc tgcaagaaca
     3241 cttgggcggc gccaggcatt acctcacaac aggcctgcag ttgttggctt cgcttctggg
     3301 caaggaggag caggccagag ccccttttgc ttccttttcc tgcccatgct gcctctcgaa
     3361 gctgggcaca ggttgccagg aggtgacatg aaagaggagg aaactccatg acctctacct
     3421 ctcccgcatt cctcccagcg ggggaggact tctctgctgc tccaaagaac atcacgcact
     3481 cctgtgtgtg tgagagctat gaatttgact ctgtgtgtgt gtgtgtgtgt gtgtgtgtgt
     3541 gtgtgtgtgt gtgtgtgtgt gtgtgtgtga gagagagaga gagagagaga gagagagaga
     3601 gagagagcgc gagagcgcgc gagcgtgctg ggtgtgtgtg agctgcgagt gcacatgggt
     3661 gctgatgtgg gacaggagca gaccttggtg gagtgggtct agactcttgg gattcttaca
     3721 catttgaggg gctgggcaat actcaatgca ctttggcatt tgcatggtgt tttcacaaca
     3781 gcacagcaat aaacattgtg attgtgtgga
//
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