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NCBI Reference Sequence: XM_039093354.2
FASTA Graphics
LOCUS XM_039093354 3810 bp mRNA linear ROD 22-FEB-2024 DEFINITION PREDICTED: Rattus norvegicus FHF complex subunit HOOK interacting protein 2B (Fhip2b), transcript variant X3, mRNA. ACCESSION XM_039093354 VERSION XM_039093354.2 DBLINK BioProject: PRJNA1074393 KEYWORDS RefSeq. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_086033) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Feb 22, 2024 this sequence version replaced XM_039093354.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_036323735.1-RS_2024_02 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.2 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 02/09/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3810 /organism="Rattus norvegicus" /mol_type="mRNA" /strain="BN/NHsdMcwi" /bio_material="RGD 61498" /db_xref="taxon:10116" /chromosome="15" /sex="male" /tissue_type="kidney, spleen, liver" /geo_loc_name="USA: Wisconsin, Milwaukee" /lat_lon="43.05 N 88.04 W" /collected_by="Rebecca Schilling, Melinda Dwinell" gene 1..3810 /gene="Fhip2b" /gene_synonym="Fam160b2; Rai16" /note="FHF complex subunit HOOK interacting protein 2B; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 ESTs, 102 long SRA reads, 3 Proteins" /db_xref="GeneID:306015" /db_xref="RGD:1308870" CDS 209..2269 /gene="Fhip2b" /gene_synonym="Fam160b2; Rai16" /codon_start=1 /product="FHF complex subunit HOOK-interacting protein 2B isoform X2" /protein_id="XP_038949282.1" /db_xref="GeneID:306015" /db_xref="RGD:1308870" /translation="MLDILVYEEKQQASSGEAGPCLEYLLQHKILETLCTLGKAEYPP GMRQQVFQFFSKVLAQVQHPLLHYLSVHRPVQKLLRLGGTAPGSLTEKEEVQFTSVLC SKIQQDPELLAYILEGKKMIGKKKTARGSAAPPKDIAGYRDKDCPHSDAPSGDPGLDK EYHGVPALSVHLPAVTEGPESGPGESNLITSLLGLCKSKKSRLALKAQENILLLVSLA SPAAATYLTQSTSCCTAIAEHLCQLYRSMPACLDPADIATLEGISWRLPSAPSDETAF PGKEALAAFLGWFDYCDHLITEAHTVVADALARAVAEKLFVETLQPQLLHVSEQSILT STALLTVLLRQLRSPALLQEAMTFLLGTDQQPASKEDSSHTLGTHLIMHCDHLSDEIS IATLRLFEELLQKPHERAIRSLVLQNLEGRLYVARGSPEPESYEDNLDLEEDPYFTDG FLDSGLQPSTKPPPAPATSSDGKTAVTEIVNSFLCLVPEEAKTSAFLEENGYDTYVHD AYGLFQECSSRVAHWGWPLGPAPLDSHEPERPFFEGRFLQVLFDRIARILDQPYSLNL QVTSVLSRLALFPHPHIHEYLLDPYISLAPGCRSLFSVLVRVIGDLMQRIQRVPQFSG KLLLVRKQLMGQIPGEHLDHQTLLQGVVVLEEFCKELAAIAFVKFPPHGPYLNFSPPP EGQV" polyA_site 3810 /gene="Fhip2b" /gene_synonym="Fam160b2; Rai16" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 ctgggagcag gagttcccgc actgagttcc ctcttagcat gggagttgcg gtcctgagtg 61 acataagtcc tcaggaaagc gggagcccag cattgacctg ctgcaggcct tcgtagagca 121 ttggaaaggc atcacacact actatatcga gagcacagat gaaaacaccc cagccaagaa 181 aacagatatc ccctggcgac tgaagcagat gttggacatc ctggtgtatg aggagaagca 241 gcaggcatcc tctggtgagg ctggaccctg tctggaatac ttgctacaac acaagatcct 301 ggagaccctg tgcactctgg gcaaagcgga gtatccccca ggcatgcggc agcaggtatt 361 ccagttcttc agcaaggtcc tggcccaggt gcagcacccc ctgctacact acctgagtgt 421 ccacagaccc gtgcagaaac ttctccgact tggaggaaca gcccctggat ccctcaccga 481 aaaggaagaa gttcagttca ccagtgtcct ttgctctaag atacagcagg atccagagct 541 gctggcctac attctggaag gtaaaaagat gataggtaag aagaagacag ccagagggtc 601 tgcagctcca cctaaagaca tagccggcta cagggacaag gactgtcccc acagcgatgc 661 tcccagtggg gatcctggac tagataagga ataccatggt gtcccagcct tgagcgtcca 721 cctgcctgct gtgactgagg ggccagaaag tgggcccggg gagagcaatc tcatcacctc 781 cctgcttggg ctgtgcaaga gcaagaagag tcgactggcc ctgaaggcac aggagaacat 841 attgctgctg gtaagcctgg cctcaccagc agctgccacc tacctgacac aaagtacctc 901 ctgttgtacg gcgatagctg agcacctttg ccaactgtac cggtccatgc cagcctgcct 961 tgacccagca gacattgcca ctttagaggg catcagttgg aggttaccaa gtgccccatc 1021 tgatgaaacc gctttccctg gcaaggaggc tctggctgcc ttcctgggct ggtttgatta 1081 ctgcgaccac cttatcacag aggcacacac ggtggttgca gatgccttgg caagggccgt 1141 ggctgagaag ctgtttgtag agaccctgca gccccagctc ctgcacgtgt ctgagcagag 1201 catcttaacc tccactgccc tgttgacagt cctgctccgt cagctgcgct cccctgctct 1261 gctgcaggag gccatgacct tcctcttagg cactgaccag cagcctgcat ccaaggagga 1321 cagttcccat actctgggca cacacctcat catgcactgt gaccatctct ctgacgagat 1381 cagcattgcc actctgaggc tgtttgagga gctgctgcag aaaccccatg agcgagccat 1441 ccgcagtttg gttctgcaga accttgaggg ccgcctgtat gtggcccggg gctcgccaga 1501 gccagagagc tatgaggata acctggatct ggaggaagac ccctacttca ccgatggctt 1561 ccttgattct ggccttcaac cctccacaaa gcctccccca gctcctgcca ccagttcaga 1621 tggcaaaaca gcagtgacgg agattgttaa cagcttcctt tgcctggtcc ctgaggaagc 1681 caagacatca gccttcctgg aggagaatgg atatgacaca tatgtccacg atgcctacgg 1741 cctgttccag gaatgcagct cccgtgtggc ccactggggt tggcccctgg gtccagcacc 1801 cttggactct catgagcctg aaaggccctt ctttgagggc cgcttcctcc aagtgctctt 1861 cgatcgaatt gcccggattt tggaccagcc ttacagcctg aacctacaag tgacctcagt 1921 cctgtcccgg ctcgccctgt tcccccaccc ccatatccat gagtacctcc tggatcccta 1981 catcagcctg gcccctggct gcaggagcct gttctctgtg cttgtcaggg tgatcggtga 2041 cttaatgcaa agaattcaga gggtacccca gttttcaggc aaactgctcc tggtgcgcaa 2101 gcaactgatg ggccagattc ccggagagca tctggaccat cagaccctac tccagggcgt 2161 ggtagttctt gaggaattct gcaaggagct ggctgccatt gcgtttgtca agtttccccc 2221 acatggtcct tacctgaact tctctccacc tccagaaggg caagtctgag ccaggagcat 2281 gatgggtggg ggaagactcc tgcctgtact tctgcccacg ggcagtctcc tgcctggcca 2341 tgctgtcact cagtcctcca tgtggggact tcggccacag acctcacctg ttgacatgag 2401 ctgaagtttc agggaggttc tggcttctaa ggcactggtg ttcttagagc cttctgagag 2461 tagctggagg acggccagtg agcgcctaga tgttgccctg catgtgtttc gtgactatct 2521 ctgctatact gtgaccaggg ccacaacaca agatagctcc aggggcaagg gaaatgaact 2581 gctgcttttg aggctggcta aaactccagt ccggagagat aggtggccaa gaaccctgtc 2641 tgttacgtta ggtatcatgg aagctgctga gactgggcag gtttctccat ggcttcatca 2701 acagtagtga aggagacaga gaagggaact gagggggagc cccctcttcc tgctctaccc 2761 tcctggagac tgttgcaaaa tttccaactg cctcatggca gatgcccaaa gtattctctg 2821 tgcccaggcg ggggcagctg ctaaccagag ctttggcgca gctgcagcca gggcaggcga 2881 gagcctggga gctgggagct gggtgccagg ttccagctcc agctggttcc tctctggcgc 2941 cttctgaacc cgtctcggca agtcggaaac acctgggcag agaggtcatt gaccaggggt 3001 ggtgggcctt gccctcagaa tcttgcccaa cccccaggga tcctagtgga attcgatcct 3061 ggggagcata ggaactcaag gtacagatgg gaacgggcac cccaacccca gactcctgaa 3121 gctagtaagg ataggctgag acacaagcag atagatagct ctggtattgt tcttcctatg 3181 tcctccatgg ctggggctgc taccccaccc ggcctgaatc tgtctcgacc tgcaagaaca 3241 cttgggcggc gccaggcatt acctcacaac aggcctgcag ttgttggctt cgcttctggg 3301 caaggaggag caggccagag ccccttttgc ttccttttcc tgcccatgct gcctctcgaa 3361 gctgggcaca ggttgccagg aggtgacatg aaagaggagg aaactccatg acctctacct 3421 ctcccgcatt cctcccagcg ggggaggact tctctgctgc tccaaagaac atcacgcact 3481 cctgtgtgtg tgagagctat gaatttgact ctgtgtgtgt gtgtgtgtgt gtgtgtgtgt 3541 gtgtgtgtgt gtgtgtgtgt gtgtgtgtga gagagagaga gagagagaga gagagagaga 3601 gagagagcgc gagagcgcgc gagcgtgctg ggtgtgtgtg agctgcgagt gcacatgggt 3661 gctgatgtgg gacaggagca gaccttggtg gagtgggtct agactcttgg gattcttaca 3721 catttgaggg gctgggcaat actcaatgca ctttggcatt tgcatggtgt tttcacaaca 3781 gcacagcaat aaacattgtg attgtgtgga //
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