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NCBI Reference Sequence: XM_008769752.4
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LOCUS XM_008769752 1712 bp mRNA linear ROD 22-FEB-2024 DEFINITION PREDICTED: Rattus norvegicus cilia and flagella associated protein 126 (Cfap126), transcript variant X2, mRNA. ACCESSION XM_008769752 VERSION XM_008769752.4 DBLINK BioProject: PRJNA1074393 KEYWORDS RefSeq. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_086031) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Feb 22, 2024 this sequence version replaced XM_008769752.3. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_036323735.1-RS_2024_02 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.2 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 02/09/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1712 /organism="Rattus norvegicus" /mol_type="mRNA" /strain="BN/NHsdMcwi" /bio_material="RGD 61498" /db_xref="taxon:10116" /chromosome="13" /sex="male" /tissue_type="kidney, spleen, liver" /geo_loc_name="USA: Wisconsin, Milwaukee" /lat_lon="43.05 N 88.04 W" /collected_by="Rebecca Schilling, Melinda Dwinell" gene 1..1712 /gene="Cfap126" /gene_synonym="RGD1562658" /note="cilia and flagella associated protein 126; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 136 long SRA reads" /db_xref="GeneID:498278" /db_xref="RGD:1562658" CDS 1045..1521 /gene="Cfap126" /gene_synonym="RGD1562658" /codon_start=1 /product="protein Flattop isoform X2" /protein_id="XP_008767974.1" /db_xref="GeneID:498278" /db_xref="RGD:1562658" /translation="MATNYSANQYERAYLPRYLQNWSPAKPTKEASPWGSYIGTWQMP LKIPPAKANLTARTTAAADSLTEWIHKNPDLLNACNGLRPEIIGKPRDLNSQKKQKKS VTKTVQQALNPTIIPSSPVIQGDNPDEPQSSHPSAGHTPGPQTPLNSPKNPPPSPS" polyA_site 1712 /gene="Cfap126" /gene_synonym="RGD1562658" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tcttttcttt tcttttcttt tctttttttt tttttttttt ttgagacagg gtcctactat 61 gtacccaagg ctgaccttga acttgagatc ctcctgcctc cacttgctga atactggggt 121 gattacaggt gtgcacagcc acctctggct cagaagtatc ttgggacaac tttgtttctt 181 tttaaaactt gagactgtat aactgacaag ccctctagtt ctaacaccct aactgacgaa 241 tagatggact taacaaaaat gtagatgagt ccctcagggt ttcttggttt tatagctaat 301 aggcttgggc cctggtacca tcagttgatc ctcccaaacc tagtgttttc atctcggact 361 ttctcttgct ctcccttctt agttccccat cccggtcccg atgtgccata tcctaaccaa 421 caccaggaag ctgtatctgt agactgtaga gcgatggagg aggcaggagg caccaaggat 481 aagcatttac agcgtctaga cctctccttc gctttatcct tccgtgtaca aagcaggcca 541 tcactacaat atgtgatgag agggatttag tggagaaagc caggggctta gttcattata 601 ccacagtgcc tcacaaactc agctgggggg ggggggtcac aaagtttgtt taaacagttg 661 aagatgtcat ccaaagacaa cctggaaatt ctgaagcagg gttaacttat gttggagaaa 721 gagctcttta catgaaagtt atctctactt tgttttggaa aaattcaaaa tctagtaact 781 gaggcaggca tagccgtcct ccccagtggt cccgggactt tagaagcaga ggcaggcagg 841 aagatccatg gctacttctc agttcatttt ctcacgtttg tttgggcctc gatagtctaa 901 aatgaaaatg gacctaagtt tcagagagaa aggaaggggg cagtgtgaac cctagaaggt 961 agccaacccc tgctgactgg gagttactcc cagaaggctg tcctcctgca gttgctaggc 1021 aacgagtgta aacagcactg gatcatggcc actaactaca gtgccaacca gtatgaaagg 1081 gcttacttac ccaggtacct gcagaactgg tctcctgcca agccaacaaa agaggcaagt 1141 ccttggggtt cctacatagg cacctggcaa atgcccctga agataccacc tgctaaggcg 1201 aacttgaccg cccgtacaac ggctgctgcc gactccctca ccgaatggat acacaagaat 1261 cctgacctac tcaatgcctg taatgggctg cgtcctgaaa tcatcggcaa gccccgtgat 1321 ctcaacagtc agaagaaaca gaagaaatct gtcacaaaga ctgtacaaca agcactaaat 1381 ccaaccataa tccccagctc cccggtgatc caaggagaca acccggatga acctcagagc 1441 tcacacccct ctgcgggtca cactccaggt ccccagacac cactcaactc tcccaagaat 1501 ccacctccga gcccaagtta gagcaccaag cggggcttag tctagctgag atccagatga 1561 gcaaagctgt gcggggtaaa ggccatgcta gggtgacatt ttagatactg attgaaataa 1621 acaagaccct gtattcagaa gtgtggaata gggaaatggt gggccaggag taaaggtaaa 1681 tttgggaaaa taaacattgt ttgcttgtta aa //
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