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PREDICTED: Rattus norvegicus cilia and flagella associated protein 126 (Cfap126), transcript variant X2, mRNA

NCBI Reference Sequence: XM_008769752.4

FASTA Graphics 

LOCUS       XM_008769752            1712 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus cilia and flagella associated protein
            126 (Cfap126), transcript variant X2, mRNA.
ACCESSION   XM_008769752
VERSION     XM_008769752.4
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086031) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Feb 22, 2024 this sequence version replaced XM_008769752.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1712
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="13"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..1712
                     /gene="Cfap126"
                     /gene_synonym="RGD1562658"
                     /note="cilia and flagella associated protein 126; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 136 long SRA reads"
                     /db_xref="GeneID:498278"
                     /db_xref="RGD:1562658"
     CDS             1045..1521
                     /gene="Cfap126"
                     /gene_synonym="RGD1562658"
                     /codon_start=1
                     /product="protein Flattop isoform X2"
                     /protein_id="XP_008767974.1"
                     /db_xref="GeneID:498278"
                     /db_xref="RGD:1562658"
                     /translation="MATNYSANQYERAYLPRYLQNWSPAKPTKEASPWGSYIGTWQMP
                     LKIPPAKANLTARTTAAADSLTEWIHKNPDLLNACNGLRPEIIGKPRDLNSQKKQKKS
                     VTKTVQQALNPTIIPSSPVIQGDNPDEPQSSHPSAGHTPGPQTPLNSPKNPPPSPS"
     polyA_site      1712
                     /gene="Cfap126"
                     /gene_synonym="RGD1562658"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 tcttttcttt tcttttcttt tctttttttt tttttttttt ttgagacagg gtcctactat
       61 gtacccaagg ctgaccttga acttgagatc ctcctgcctc cacttgctga atactggggt
      121 gattacaggt gtgcacagcc acctctggct cagaagtatc ttgggacaac tttgtttctt
      181 tttaaaactt gagactgtat aactgacaag ccctctagtt ctaacaccct aactgacgaa
      241 tagatggact taacaaaaat gtagatgagt ccctcagggt ttcttggttt tatagctaat
      301 aggcttgggc cctggtacca tcagttgatc ctcccaaacc tagtgttttc atctcggact
      361 ttctcttgct ctcccttctt agttccccat cccggtcccg atgtgccata tcctaaccaa
      421 caccaggaag ctgtatctgt agactgtaga gcgatggagg aggcaggagg caccaaggat
      481 aagcatttac agcgtctaga cctctccttc gctttatcct tccgtgtaca aagcaggcca
      541 tcactacaat atgtgatgag agggatttag tggagaaagc caggggctta gttcattata
      601 ccacagtgcc tcacaaactc agctgggggg ggggggtcac aaagtttgtt taaacagttg
      661 aagatgtcat ccaaagacaa cctggaaatt ctgaagcagg gttaacttat gttggagaaa
      721 gagctcttta catgaaagtt atctctactt tgttttggaa aaattcaaaa tctagtaact
      781 gaggcaggca tagccgtcct ccccagtggt cccgggactt tagaagcaga ggcaggcagg
      841 aagatccatg gctacttctc agttcatttt ctcacgtttg tttgggcctc gatagtctaa
      901 aatgaaaatg gacctaagtt tcagagagaa aggaaggggg cagtgtgaac cctagaaggt
      961 agccaacccc tgctgactgg gagttactcc cagaaggctg tcctcctgca gttgctaggc
     1021 aacgagtgta aacagcactg gatcatggcc actaactaca gtgccaacca gtatgaaagg
     1081 gcttacttac ccaggtacct gcagaactgg tctcctgcca agccaacaaa agaggcaagt
     1141 ccttggggtt cctacatagg cacctggcaa atgcccctga agataccacc tgctaaggcg
     1201 aacttgaccg cccgtacaac ggctgctgcc gactccctca ccgaatggat acacaagaat
     1261 cctgacctac tcaatgcctg taatgggctg cgtcctgaaa tcatcggcaa gccccgtgat
     1321 ctcaacagtc agaagaaaca gaagaaatct gtcacaaaga ctgtacaaca agcactaaat
     1381 ccaaccataa tccccagctc cccggtgatc caaggagaca acccggatga acctcagagc
     1441 tcacacccct ctgcgggtca cactccaggt ccccagacac cactcaactc tcccaagaat
     1501 ccacctccga gcccaagtta gagcaccaag cggggcttag tctagctgag atccagatga
     1561 gcaaagctgt gcggggtaaa ggccatgcta gggtgacatt ttagatactg attgaaataa
     1621 acaagaccct gtattcagaa gtgtggaata gggaaatggt gggccaggag taaaggtaaa
     1681 tttgggaaaa taaacattgt ttgcttgtta aa
//
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