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NCBI Reference Sequence: XM_054323845.1
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LOCUS XM_054323845 2568 bp mRNA linear PRI 26-AUG-2024 DEFINITION PREDICTED: Homo sapiens cadherin 22 (CDH22), transcript variant X4, mRNA. ACCESSION XM_054323845 VERSION XM_054323845.1 DBLINK BioProject: PRJNA807723 KEYWORDS RefSeq. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_060944) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Updated annotation Annotation Name :: GCF_009914755.1-RS_2024_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Best-placed RefSeq; Gnomon; RefSeqFE; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/23/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2568 /organism="Homo sapiens" /mol_type="mRNA" /isolate="CHM13" /db_xref="taxon:9606" /chromosome="20" /sex="female" /cell_line="CHM13htert" /tissue_type="hydatidiform mole" /note="haploid cell line" gene 1..2568 /gene="CDH22" /gene_synonym="C20orf25; dJ998H6.1" /note="cadherin 22; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, 3 long SRA reads, 1 Protein, and 95% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns" /db_xref="GeneID:64405" /db_xref="HGNC:HGNC:13251" /db_xref="MIM:609920" CDS 644..2143 /gene="CDH22" /gene_synonym="C20orf25; dJ998H6.1" /codon_start=1 /product="cadherin-22 isoform X4" /protein_id="XP_054179820.1" /db_xref="GeneID:64405" /db_xref="HGNC:HGNC:13251" /db_xref="MIM:609920" /translation="MRPRPEGRGLRAGVALSPALLLLLLLPPPPTLLGRLWAAGTPSP SAPGARQDGALGAGRVKRGWVWNQFFVVEEYTGTEPLYVGKIHSDSDEGDGAIKYTIS GEGAGTIFLIDELTGDIHAMERLDREQKTFYTLRAQARDRATNRLLEPESEFIIKVQD INDSEPRFLHGPYIGSVAELSPTGTSVMQVMASDADDPTYGSSARLVYSVLDGEHHFT VDPKTGVIRTAVPDLDRESQERYEVVIQATDMAGQLGGLSGSTTVTIVVTDVNDNPPR FPQKMYQFSIQESAPIGTAVGRVKAEDSDVGENTDMTYHLKDESSSGGDVFKVTTDSD TQEAIIVVQKRLDFESQPVHTVILEALNKFVDPRFADLGTFRDQAIVRVAVTDVDEPP EFRPPSGLLEVQEDAQVGSLVGVVTARDPDAANRPVRYAIDRESDLDQIFDIDADTGA IVTGKGLDRETAGWHNITVLAMEADEETEAQGRTGMAPRSQSKSWQGQA" polyA_site 2568 /gene="CDH22" /gene_synonym="C20orf25; dJ998H6.1" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 agacacgcac actccctcgc tcccgctcgc tcgctcactc cctcgctctc tcgctctctc 61 gctctctcgc tcacacacac gcgcgcacac gccgccgcgg ctccccctct cgctcccgct 121 ctccctccgg ctcctgcggg cggccgcggg gctccggact cgcccgctgc ccgcgccggg 181 gctcccgccc cacgcagcgt cccgaggcgg caggactagg gggagccccg ggccgctccc 241 cgaggctcct gatggaaagg gaaggcccct agtcctggca ggatctgccg gccccaaccc 301 gcatcctttc tgcgcaggaa ccatggcgct tccccgactc tggagctgtc caggtgctgc 361 ctggtgatcc gcacgcgacg cggcgagggg ggcgcgggcg ggcaccccgg gggctgtcca 421 tgccccggat gcggccgcgc cccctccccc tccagccggg tacccccgcg gctgggcggc 481 gttcagggcc gcgggcccgt ccgggtgccc cgtcgggggc gacatcccgg cggccgcgct 541 gaggccacca tgtgacacgg cgccgcatcg ttgtgcgacc aagcagcggc gccctggtgc 601 ctctcgtcca tgctcctggg ccccagcccc gcgcaggcca aggatgaggc cgaggcccga 661 aggtaggggg ctccgggcgg gagtcgcgct gtcccccgcg ctactgctgc tgctgctgct 721 gccgccgccg ccgacgctgc tggggcgcct gtgggcagcg ggcacaccct cgccgtcggc 781 gcccggagct cggcaggacg gcgcgctggg agccggccgc gtcaaacgcg gctgggtgtg 841 gaaccagttc ttcgtggtag aggagtacac gggcacggag cccctgtatg tgggcaagat 901 ccactccgac tcagacgagg gtgacggggc catcaagtac accatctcag gcgagggtgc 961 tgggaccatc ttcctgatcg acgagctgac aggcgacatt catgccatgg agcgcctgga 1021 ccgcgagcag aaaaccttct acacgctgcg ggcccaggct cgggatcgcg ccaccaaccg 1081 cctactggag cccgagtcgg agttcatcat caaggtgcag gacatcaatg acagtgagcc 1141 ccgcttcctg cacggcccct atattggcag cgtggccgag ctctcaccta caggcacgtc 1201 ggtgatgcag gtgatggcct cggatgcgga tgaccccacg tacggcagca gcgctcggct 1261 ggtgtacagc gtgctggacg gcgagcacca cttcaccgtg gaccccaaga ccggcgtaat 1321 ccggacggct gtgcctgacc ttgaccgcga gagccaggag cgctacgagg tggtgatcca 1381 ggccacagac atggcgggtc agctgggtgg cctctcgggc tccactaccg tcaccatcgt 1441 agtcaccgac gtcaatgaca acccgccccg tttcccgcag aagatgtacc agttcagcat 1501 ccaggagtca gcccccattg gaacggctgt gggacgtgtg aaggctgagg actcagacgt 1561 gggagagaac acagacatga cttaccacct taaggacgag agcagcagcg gcggcgatgt 1621 gttcaaggtc accacagaca gcgacactca ggaggccatc atcgtagtgc agaagcgcct 1681 ggacttcgaa tcccagcccg tgcacaccgt gatcctggag gccctcaaca agttcgtgga 1741 cccccgcttc gccgacctgg gcacgttccg cgaccaggcg atcgtgcgcg tggccgtgac 1801 cgacgtggac gagccccccg agttccggcc gccctccggc ctcctggagg tgcaggagga 1861 cgcgcaggtg ggctccctgg tcggcgtggt gacggcgcgg gaccccgacg ccgccaaccg 1921 gcccgtccgg tacgccattg accgcgaatc agatttggac cagatcttcg atatcgatgc 1981 ggacacaggc gccatcgtga ctggcaaggg gctggaccgc gagacggccg gctggcacaa 2041 catcacagtg ctggccatgg aggcggatga ggaaacagag gctcagggaa gaacagggat 2101 ggccccaaga tcacagagca agtcctggca ggggcaggct tgacccaaga cctccggctt 2161 cccaggagcc agccagagcc ccaggtgcat ggccatcggg tctgcccacc cagccccatg 2221 ccctcctgcc aaagcgtcca tttggcttcc tcaaaaacag aagggaaact cagagggtca 2281 tggtggcccc acctgctcct ggtcataata aacatgaggt gacaagaatc agaggggaaa 2341 tatttataca cagcggcggc gcttggtgag cacctcggag aatgttgcac tcagccagga 2401 gccaccgcct gtcatactgg attacctcaa agactcccga gccacttagt atgccggctc 2461 ccctctcccc gaacttctga gtcatccatt ctgcccatgc agacgctcct tccactgaca 2521 ttatctttaa cgttttgtaa tcatgaaata ttaatgactg atattgaa //
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