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PREDICTED: Homo sapiens cadherin 22 (CDH22), transcript variant X4, mRNA

NCBI Reference Sequence: XM_054323845.1

FASTA Graphics 

LOCUS       XM_054323845            2568 bp    mRNA    linear   PRI 26-AUG-2024
DEFINITION  PREDICTED: Homo sapiens cadherin 22 (CDH22), transcript variant X4,
            mRNA.
ACCESSION   XM_054323845
VERSION     XM_054323845.1
DBLINK      BioProject: PRJNA807723
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_060944) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_009914755.1-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/23/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2568
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /isolate="CHM13"
                     /db_xref="taxon:9606"
                     /chromosome="20"
                     /sex="female"
                     /cell_line="CHM13htert"
                     /tissue_type="hydatidiform mole"
                     /note="haploid cell line"
     gene            1..2568
                     /gene="CDH22"
                     /gene_synonym="C20orf25; dJ998H6.1"
                     /note="cadherin 22; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 2 ESTs, 3 long SRA reads,
                     1 Protein, and 95% coverage of the annotated genomic
                     feature by RNAseq alignments, including 1 sample with
                     support for all annotated introns"
                     /db_xref="GeneID:64405"
                     /db_xref="HGNC:HGNC:13251"
                     /db_xref="MIM:609920"
     CDS             644..2143
                     /gene="CDH22"
                     /gene_synonym="C20orf25; dJ998H6.1"
                     /codon_start=1
                     /product="cadherin-22 isoform X4"
                     /protein_id="XP_054179820.1"
                     /db_xref="GeneID:64405"
                     /db_xref="HGNC:HGNC:13251"
                     /db_xref="MIM:609920"
                     /translation="MRPRPEGRGLRAGVALSPALLLLLLLPPPPTLLGRLWAAGTPSP
                     SAPGARQDGALGAGRVKRGWVWNQFFVVEEYTGTEPLYVGKIHSDSDEGDGAIKYTIS
                     GEGAGTIFLIDELTGDIHAMERLDREQKTFYTLRAQARDRATNRLLEPESEFIIKVQD
                     INDSEPRFLHGPYIGSVAELSPTGTSVMQVMASDADDPTYGSSARLVYSVLDGEHHFT
                     VDPKTGVIRTAVPDLDRESQERYEVVIQATDMAGQLGGLSGSTTVTIVVTDVNDNPPR
                     FPQKMYQFSIQESAPIGTAVGRVKAEDSDVGENTDMTYHLKDESSSGGDVFKVTTDSD
                     TQEAIIVVQKRLDFESQPVHTVILEALNKFVDPRFADLGTFRDQAIVRVAVTDVDEPP
                     EFRPPSGLLEVQEDAQVGSLVGVVTARDPDAANRPVRYAIDRESDLDQIFDIDADTGA
                     IVTGKGLDRETAGWHNITVLAMEADEETEAQGRTGMAPRSQSKSWQGQA"
     polyA_site      2568
                     /gene="CDH22"
                     /gene_synonym="C20orf25; dJ998H6.1"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 agacacgcac actccctcgc tcccgctcgc tcgctcactc cctcgctctc tcgctctctc
       61 gctctctcgc tcacacacac gcgcgcacac gccgccgcgg ctccccctct cgctcccgct
      121 ctccctccgg ctcctgcggg cggccgcggg gctccggact cgcccgctgc ccgcgccggg
      181 gctcccgccc cacgcagcgt cccgaggcgg caggactagg gggagccccg ggccgctccc
      241 cgaggctcct gatggaaagg gaaggcccct agtcctggca ggatctgccg gccccaaccc
      301 gcatcctttc tgcgcaggaa ccatggcgct tccccgactc tggagctgtc caggtgctgc
      361 ctggtgatcc gcacgcgacg cggcgagggg ggcgcgggcg ggcaccccgg gggctgtcca
      421 tgccccggat gcggccgcgc cccctccccc tccagccggg tacccccgcg gctgggcggc
      481 gttcagggcc gcgggcccgt ccgggtgccc cgtcgggggc gacatcccgg cggccgcgct
      541 gaggccacca tgtgacacgg cgccgcatcg ttgtgcgacc aagcagcggc gccctggtgc
      601 ctctcgtcca tgctcctggg ccccagcccc gcgcaggcca aggatgaggc cgaggcccga
      661 aggtaggggg ctccgggcgg gagtcgcgct gtcccccgcg ctactgctgc tgctgctgct
      721 gccgccgccg ccgacgctgc tggggcgcct gtgggcagcg ggcacaccct cgccgtcggc
      781 gcccggagct cggcaggacg gcgcgctggg agccggccgc gtcaaacgcg gctgggtgtg
      841 gaaccagttc ttcgtggtag aggagtacac gggcacggag cccctgtatg tgggcaagat
      901 ccactccgac tcagacgagg gtgacggggc catcaagtac accatctcag gcgagggtgc
      961 tgggaccatc ttcctgatcg acgagctgac aggcgacatt catgccatgg agcgcctgga
     1021 ccgcgagcag aaaaccttct acacgctgcg ggcccaggct cgggatcgcg ccaccaaccg
     1081 cctactggag cccgagtcgg agttcatcat caaggtgcag gacatcaatg acagtgagcc
     1141 ccgcttcctg cacggcccct atattggcag cgtggccgag ctctcaccta caggcacgtc
     1201 ggtgatgcag gtgatggcct cggatgcgga tgaccccacg tacggcagca gcgctcggct
     1261 ggtgtacagc gtgctggacg gcgagcacca cttcaccgtg gaccccaaga ccggcgtaat
     1321 ccggacggct gtgcctgacc ttgaccgcga gagccaggag cgctacgagg tggtgatcca
     1381 ggccacagac atggcgggtc agctgggtgg cctctcgggc tccactaccg tcaccatcgt
     1441 agtcaccgac gtcaatgaca acccgccccg tttcccgcag aagatgtacc agttcagcat
     1501 ccaggagtca gcccccattg gaacggctgt gggacgtgtg aaggctgagg actcagacgt
     1561 gggagagaac acagacatga cttaccacct taaggacgag agcagcagcg gcggcgatgt
     1621 gttcaaggtc accacagaca gcgacactca ggaggccatc atcgtagtgc agaagcgcct
     1681 ggacttcgaa tcccagcccg tgcacaccgt gatcctggag gccctcaaca agttcgtgga
     1741 cccccgcttc gccgacctgg gcacgttccg cgaccaggcg atcgtgcgcg tggccgtgac
     1801 cgacgtggac gagccccccg agttccggcc gccctccggc ctcctggagg tgcaggagga
     1861 cgcgcaggtg ggctccctgg tcggcgtggt gacggcgcgg gaccccgacg ccgccaaccg
     1921 gcccgtccgg tacgccattg accgcgaatc agatttggac cagatcttcg atatcgatgc
     1981 ggacacaggc gccatcgtga ctggcaaggg gctggaccgc gagacggccg gctggcacaa
     2041 catcacagtg ctggccatgg aggcggatga ggaaacagag gctcagggaa gaacagggat
     2101 ggccccaaga tcacagagca agtcctggca ggggcaggct tgacccaaga cctccggctt
     2161 cccaggagcc agccagagcc ccaggtgcat ggccatcggg tctgcccacc cagccccatg
     2221 ccctcctgcc aaagcgtcca tttggcttcc tcaaaaacag aagggaaact cagagggtca
     2281 tggtggcccc acctgctcct ggtcataata aacatgaggt gacaagaatc agaggggaaa
     2341 tatttataca cagcggcggc gcttggtgag cacctcggag aatgttgcac tcagccagga
     2401 gccaccgcct gtcatactgg attacctcaa agactcccga gccacttagt atgccggctc
     2461 ccctctcccc gaacttctga gtcatccatt ctgcccatgc agacgctcct tccactgaca
     2521 ttatctttaa cgttttgtaa tcatgaaata ttaatgactg atattgaa
//
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