U.S. flag

An official website of the United States government

PREDICTED: Mus musculus sex comb on midleg homolog 1 (Scmh1), transcript variant X1, mRNA

NCBI Reference Sequence: XM_017320253.2

FASTA Graphics 

LOCUS       XM_017320253            8469 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus sex comb on midleg homolog 1 (Scmh1),
            transcript variant X1, mRNA.
ACCESSION   XM_017320253
VERSION     XM_017320253.2
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000070.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_017320253.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8469
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="4"
     gene            1..8469
                     /gene="Scmh1"
                     /gene_synonym="Scml1; Scml3"
                     /note="sex comb on midleg homolog 1; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 6
                     mRNAs, 20 ESTs, 559 long SRA reads, 13 Proteins, and 99%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 52 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:29871"
                     /db_xref="MGI:MGI:1352762"
     CDS             5547..7541
                     /gene="Scmh1"
                     /gene_synonym="Scml1; Scml3"
                     /codon_start=1
                     /product="polycomb protein SCMH1 isoform X1"
                     /protein_id="XP_017175742.1"
                     /db_xref="GeneID:29871"
                     /db_xref="MGI:MGI:1352762"
                     /translation="MLVCYSVLACESLWDLPCSIMGSPLGHFTWDKYLKETCSVPAPV
                     HCFKQSYTPPSNEFKISMKLEAQDPRNTTSTCIATVVGLTGARLRLRLDGSDNKNDFW
                     RLVDSSEIQPIGNCEKNGGMLQPPLGFRLNASSWPMFLLKTLNGAEMAPIKIFHKEPP
                     SPSHNFFKMGMKLEAVDRKNPHFICPATIGEVRGAEVLVTFDGWRGAFDYWCRFDSRD
                     IFPVGWCSLTGDNLQPPGTKVVIPKNPSPSSDVSTEKPSIHSTKTVLEHQPGQRGRKP
                     GKKRGRTPKILIPHPTSTPSKSAEPLKFPKKRGPKPGSKRKPRTLLSPPPTSPTTSTP
                     EPDTSTVPQDAATVPSSAMQAPTVCIYLNKSGSTGPHLDKKKIQQLPDHFGPARASVV
                     LQQAVQACIDCAYHQKTVFSFLKQGHGGEVISAVFDREQHTLNLPAVNSITYVLRFLE
                     KLCHNLRSDNLFGNQPFTQTHLSLTATEYNHNHDRYLPGETFVLGNSLARSLETHSDL
                     MDSALKPANLVSTSQNLRTPGYRPLLPSCGLPLSTVSAVRRLCSKGVLKGKKERRDVE
                     SFWKLNHSPGSDRHLESRDPPRLSGRDPSSWTVEDVMQFVREADPQLGSHADLFRKHE
                     IDGKALLLLRSDMMMKYMGLKLGPALKLSFHIDRLKQGKF"
ORIGIN      
        1 ttaccttgtc taatgttaat ggattgtttc ttccgttgat tcacacgtga catactttca
       61 gatctctaac acaaagtcac catttttatt cttgtgtact atctttttct ctctgagtca
      121 ggccaaactt aatgcccaca tgtgatgtta ctagtccagg acagaagtag gactggtgtg
      181 cttctttctt gctttcattt atccaaaagt tttgactagg ctgcactaaa cttcaaggca
      241 ctatgcttaa caatgagggt tgaataaaca gccttcatcc atcgacttta atcacagtga
      301 tatgacagga tgagtgtgaa aagagcataa aggagttaag gaaaatcaga aggctttgca
      361 gatgaaatcg tggttgtgtt gagtgacttc atatatagtg gtggtatggt acaaggtagt
      421 tagagtgcgg tgctacggta ggaggccaag ccaagtatcc aaaaatttgt ttgaggaaac
      481 tcttaagctt ccatctagaa taagtttaat gattctgagc ctgtgaagcc tcttgaaccc
      541 agaccttttc caccccagat tccttgcctg aactctacag aaagcaaagc ctcttctctt
      601 cattacctga aaagaacagt aacattgctc tagatatttc tattacaaca ccacctcaag
      661 tgacctttct ttttctttct tttttcctca gtgaagaaac tacatgaaaa tgtttttcag
      721 tgtcacagct gaaacttttt tactttgttt tgttttggtg tagttgggtt ggttttgttt
      781 tgtgaggttt ttgttgttct tgttttgggt tttgtttaaa tgtttggtct ttgttttacc
      841 caaccttctg ctctagtctt gaggcatttg atgaaagact atacatacta actcactcgt
      901 acttctctgt gcatgaattt tttaaaaccc caaaccagat ggttggaatg tatatgaatg
      961 aactcttgat gcattgattc tgggagctga gctgccactt gaaacttcct ttttagccag
     1021 ggtatttgat aagcactttg ctgttagcta agaggttttg tggtatattt gagaaacatt
     1081 aataatgcaa ataagttatt ttcagaagtt atattttggt ttgatgtttt atttttatct
     1141 gatccattat aattttaaag ggttctagat gatggggtgt ttttttgttt tttttttttg
     1201 ttttttgttt tttttttggt ttttttgaga cagggtttct ctgtagccct ggctgtcctg
     1261 gaactcactc tgtagaacag gctggcctca aactcagaaa tccacctgcc tctgcctcct
     1321 gagtgctggg attaaaggcg tgcaccacca ctgcccggcc ctggatgatg ttttgtgagt
     1381 actgtttaac attagacatt ttaggacaac tggattttat tagaactata tatgccatca
     1441 tttaataacc atctgaaaaa tgccaagaac acatagtatg taaagtatga attattaaaa
     1501 gaacccagtc aagcaaatta tttaaattga ttatgaaatt acttgaagca atgtttctga
     1561 tgctgagata gacagatgaa tgagaagaac agaatagtat ccagaaatag atctaagaat
     1621 atataaaaaa ttaatacaaa agcggggatt tcaaatccat ggagaaaaaa tggtttattc
     1681 agtagatgat attggagcac atttattaga gaaaaaagta aatgaggaaa gccagatgct
     1741 tgtctcattt attttataat ctaaattaca aaaagattag tgcttacata taaaaaaaca
     1801 aaactggaga tattcttgaa gaaaaaaata acttcatatt ttttataata taaacatata
     1861 atataatatg tggtatgaaa aacaagaagc cataaaaggg atggtggaga aacataaggg
     1921 caaaccctac tgaatgagac agcattttaa tgatatagag gaagggctaa tgtttgcaaa
     1981 gaccttagac tctgtaagaa atggaagctt gttagcagaa agattgcaaa aaataaaaac
     2041 taagtttcca aagatcttca accttattag taatcaaaga actgtccaaa aagtatatta
     2101 gcatatcatt ttgttttgtt tggtttggtt tttactgttg agatttatca aatttcctag
     2161 cacatgagaa gctaaggcag tagcattatt aggttgaggt cagcctagga taaataccaa
     2221 gttccaggtc agactgggat atagaagtga gaccctatct taaaaaaaaa tcaaaagcta
     2281 caaactgtca aaacataatt ttagcaaagg catgaataca tacttatata ctttatttat
     2341 ctattctttg agaattttat acatgtatac aatgtatata caatctactc tctcttcatt
     2401 catgtacttg tgatagtagt agaaattgga ctactctttg tagaggatat ttcagcaata
     2461 tatattgtgt caaaacctaa aatatccagt ttgtctatta attctcctct ttggtatttt
     2521 ccctaggaag accatcttag tcagactttc atcactaact aaaaccttag agtaggatga
     2581 aacaagagag ggtgtggtat gaatatgacc aaaatgctcc tctggcttat tacataccaa
     2641 gtaatcaacc tcttaattag attccatctt ctaccatttg accacttccc aggaatctac
     2701 tgatagtctc aatctatcaa tagattaagt cattgattag gtcagagccc tcatgatgta
     2761 ttcatctgtg ggaacacctt cctagaggcc caggaagatg ctttaataag ctcctaggtg
     2821 tctctcagtc caaacaagtt aataattaag attaaccatc ccaaagatca ttttaaaagt
     2881 acagatgggt acacaaagat aagcactaag acatcaggtg gtacttaaat gaccatcaca
     2941 agttgttagg atatattaag ttacagggca tatgcacaat gaaacagtgt tttgacagta
     3001 atcttggagt agaacttcta atctaaagac attgatcact attatttctc ttaaggactt
     3061 ttcacatcta agtagaatga agtagagttc ttaaagggaa cataaccaga atagtagcca
     3121 gttaaaatag ctgatgcaaa aatcaataat tttgcttcct tgttttttac atcatttttc
     3181 acaccacttt atttcttcct ttcaaatgtt tatcacatct tttatttgtg tgctaggtgt
     3241 gtcttatcat acaccagaat gcaaggtaaa ttccataagg aagggatttc tgttaaagta
     3301 cctactctga aagatgctca ataaacgtgt gttggataaa taattgaaaa ctcaaattat
     3361 aatatttgaa tgttttaaat aacatgtgaa cacttttaaa cacttgtttt atatgtgttt
     3421 aaattataaa atactatatg tctgttaata atattagtca agtgattgca gaccccaagt
     3481 atgaactaaa tttcccttta ctggccttgg agaggtggct taacaattta gagcacttga
     3541 tgctcctgaa gaggacctca gtttggttcc cagcacccag gtcaggtggc tcatctgtaa
     3601 ctctaactct aaggagattg gtggcccttt tttttggact ctgtggacac ccatacacat
     3661 gtgtgcatac tcaaacactg acataacaca cataattaaa ataacaaaaa tgaaatatta
     3721 aaattttcct atactacatt ctcatagtga tccgttccac cttgttaaac ttaattacaa
     3781 tattacataa gcaagtattc tgcttatcta gtaactgaaa gtgtcataac atctaacaca
     3841 gttctttata cttgaaaggg tattatgtag gtatcaaatg aagaatttat atgcaattgt
     3901 atgtatgcat tgtgtataca actttctcca tctttcagct gagtaaactg aggcttggaa
     3961 ggttaagttt gcccaagata tttgctataa aagcaacatt ttttgacttc caatatatga
     4021 aaaaatacca gtagtccata aaccagagta ccagagtcct tgaaactact gagtgaaaac
     4081 tttgaagaaa tgagagcact taggagcacg gttttggaat caacaattag accctgtgtt
     4141 gtgaaactac tattggaggc ccatactcag tctgccagct gcttttagca aggctttcta
     4201 gatgcaagct ttcattgtta tttccaactg tctgctgctc tgtcacacca cagtggctta
     4261 gtgtaagaac tgtgacatgg actaggtagc ttccatagca taatagtttt gttatcttta
     4321 aaaaaaaaaa aaactaactc ttgatatata ccttgtttac tgtcatttct tttgtgatta
     4381 ttttaatgct tgcagattca gaagtcatat aatagctgac tttatgataa acatgaaaga
     4441 atgtgtttaa ataatctggt taggtttctc tcatttcctc cctctccctc tcctccccct
     4501 gcccccacac ctgttgataa cccaggcaat caaatagaag aaaaaaaaat atggttcaaa
     4561 gcagtgagcc atcatggtgg gtgagctgta aattcctctt cactcagtaa caagagactt
     4621 cttacatggt atttgcttgg ggtttctggg ctttttacct tatagcacag gaattgatta
     4681 gcatggttga tctgtgtgat aggcaactgt aactaatgcc atcataattc ttaaaaccag
     4741 agtctcttgg gtacttttga tcagaactca tgctaataaa aacagttgcc cagcattggc
     4801 catacatttt aacctctgct tcctaacaca ttaggtatga gccttatgta cattttaaaa
     4861 ttatttgaag ttaaataaaa gttaaaattt agttccttac actagtcaca tttaaaatat
     4921 tcagaagtta tatgtagtat tatgtagcta gtgttatctt acagggtaca tagttcattt
     4981 ctgtcagcac agaaatatag ttgaactgga ctttctgctc tagatggtag tgagcttaag
     5041 ggtctcagtc cagtgaaatt caggatttaa aagttgactt aaatatttca cttgtaaaga
     5101 tgtaataata atttgcaatg ttttcttttt ctaatagcaa gtaatgataa cattattcat
     5161 tcttcaactt aagaccttct caactaatag ctataacata atactatcaa aattgaattt
     5221 tggtaacctc tttaaatctt cattccagga aattacccac tcgtttactg tatgggctgt
     5281 ctagtcattc tgttagttgt agactggctt gtgaaatatt tccgagctga ttaggatttc
     5341 tggccagact tacttgctta gttaagggtg gtgggaaagg gacaaaacag caggtataaa
     5401 gctgacagag tgcgaagtct tggcatcgtc tttgtagtga tttagatgtc attattcagt
     5461 gactcatttt tattcccagc atctagtgct ttttgcatgg cccaaagggg ccctgtgctg
     5521 ctccactaca gaggaaaatt caagaaatgc tggtttgcta cagtgtttta gcttgtgaga
     5581 gtctctggga ccttccctgc tccatcatgg ggtcacctct aggtcatttt acctgggaca
     5641 aatacctaaa agaaacatgt tcagtcccag cgcctgtcca ttgcttcaag cagtcctaca
     5701 cacctccaag taatgagttc aagatcagca tgaaattgga agcacaggat cccaggaaca
     5761 ccacatccac ctgtattgcc acggtcgttg gattgacagg tgcccgactt cgtctgcgcc
     5821 ttgatggcag tgacaacaag aatgacttct ggagactggt tgactcctct gaaatccagc
     5881 caattggaaa ctgtgagaag aatggcggga tgctgcagcc ccctctagga tttcggctga
     5941 atgcctcctc ttggcccatg ttccttttga agacactaaa tggagcagag atggctccca
     6001 tcaagatttt ccataaggag ccaccatcac cttcccacaa cttcttcaaa atgggaatga
     6061 agttagaagc tgtagacaga aagaaccctc atttcatttg cccagccact attggagaag
     6121 ttcgaggcgc agaagtgcta gtcacctttg atgggtggcg aggcgcattt gactactggt
     6181 gccgctttga ctcccgggac atctttcctg tgggctggtg ttctttgact ggagataacc
     6241 tgcagccacc tggcaccaaa gttgtgattc caaagaatcc gtccccttca tctgatgtga
     6301 gcactgagaa gcccagcatc cacagcacca aaactgtctt ggagcatcag ccagggcaga
     6361 ggggccgcaa accaggaaag aagcggggcc gaacacccaa gatccttatt ccccatccca
     6421 cctctacccc atccaagtca gctgaacctt tgaaatttcc aaagaagaga ggtcccaagc
     6481 ctggcagtaa gaggaaacct cggactttgc tgagcccacc acccacctca ccaacaacca
     6541 gcacccctga accggacacc agcactgttc ctcaagatgc tgccaccgtc ccaagttcag
     6601 ccatgcaggc ccccacagtt tgtatctact tgaacaagag cggcagcacg ggcccccacc
     6661 tggataagaa gaagatccaa caactccctg accattttgg gccagcccgt gcctctgtgg
     6721 tgctgcagca ggctgtccag gcttgcattg actgtgctta tcaccagaaa actgtcttca
     6781 gcttcctcaa acagggccac ggcggtgaag tcatttcagc cgtgtttgac cgggaacagc
     6841 acactctgaa cctcccagca gtcaacagca tcacctatgt cctccgtttc ctggagaagc
     6901 tctgccacaa ccttcgaagt gacaatctgt ttggcaacca gccctttaca cagactcact
     6961 tatcactcac tgccacagag tataatcaca accacgacag gtacctacca ggtgaaacct
     7021 ttgtcctggg gaatagcctg gcccggtcct tggagacaca ctcagacctg atggattctg
     7081 ccttgaagcc tgccaacctt gtcagcacat cccaaaacct tcggactcct ggctatcggc
     7141 ccttgcttcc ctcctgtggc ctcccattaa gcactgtctc tgctgtgcgt aggctctgct
     7201 ctaagggagt gttaaaagga aaaaaggaaa gaagggatgt ggagtcattt tggaaactaa
     7261 atcattcccc agggtcagat cgacatctgg agagccgaga tccccctcgc ctgagtggcc
     7321 gggacccctc ctcatggaca gtggaggatg tgatgcagtt tgtccgggaa gccgatcctc
     7381 agcttggatc ccatgctgac ctcttccgaa aacatgaaat cgatggcaag gccctgctcc
     7441 tgctgcgcag tgacatgatg atgaagtaca tgggcctgaa gctggggccc gccctcaagc
     7501 tctcctttca cattgaccgg ctgaagcagg gcaagttctg aacaggaggc actcttctcc
     7561 caggaagccg cccgccagct cccaggcacc ttagtagggc tctgggtgac ctcaggactc
     7621 taggaggctg gaaagccacc actgctaccc ttcctgccct gatgtgtcct tccatgaagg
     7681 actgaggagg gaacagtggg cccggggctg gtgctgctct tccccttagc ctgctgtggc
     7741 tcccaggccc ttctatttat ttctcaaggc tagccagcct ctctccacaa gtttagacga
     7801 gcacctttca agagatgagg aagacgccag ccctaggacc ttgaaaggcc ctggtaccca
     7861 ggccccttgc cacctcctgg gcttggcata gtgtcccaag gcccccagct catgccttct
     7921 cactggatcc ccagactctg aacttatggt gcagaccttt tttaaagaga tcctttctta
     7981 ttgctaattt attgcttctg gcgtttggac ttaatgcttc tcttgcacca aacagttttt
     8041 tggaagaggg agaccatcct ctggtccaga gagggcctct ccagagaagt gtggcctatt
     8101 tcagaagaca ctgccctagg gcacttcttc tctggaatgg acaaagtatt tggctcactg
     8161 agcaaaaggt gagggtctct cttcctacac tgggtccttt gtagccccag tcttcatctc
     8221 tgatggagtt tcccctctcc ctgcccccac agctccctgc cctggtcaga attgctgcaa
     8281 aagatggggc ctaatgcaat taggtcacgg ggccccaatg gtgggaggag gacctcaagg
     8341 ctggaggagt tctgccctct gctagctcct gtgctttcct cctaagcaag tcagcagcac
     8401 tgctgccccc actgccatct gaactatttt gtgtccgttt gtttataaat aaaaaccaat
     8461 acaaatgcc
//
Feature
Display: FASTA GenBank Help
Details

Supplemental Content

Change region shown

Customize view

Reference sequence information

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
External link. Please review our privacy policy.