Warning: The NCBI web site requires JavaScript to function. more...
An official website of the United States government
The .gov means it's official. Federal government websites often end in .gov or .mil. Before sharing sensitive information, make sure you're on a federal government site.
The site is secure. The https:// ensures that you are connecting to the official website and that any information you provide is encrypted and transmitted securely.
Download features.
Download gene features.
NCBI Reference Sequence: XM_017320253.2
FASTA Graphics
LOCUS XM_017320253 8469 bp mRNA linear ROD 07-FEB-2024 DEFINITION PREDICTED: Mus musculus sex comb on midleg homolog 1 (Scmh1), transcript variant X1, mRNA. ACCESSION XM_017320253 VERSION XM_017320253.2 DBLINK BioProject: PRJNA169 KEYWORDS RefSeq. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000070.7) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Sep 21, 2020 this sequence version replaced XM_017320253.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Updated annotation Annotation Name :: GCF_000001635.27-RS_2024_02 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.2 Annotation Method :: Best-placed RefSeq; Gnomon; RefSeqFE; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 02/01/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..8469 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="taxon:10090" /chromosome="4" gene 1..8469 /gene="Scmh1" /gene_synonym="Scml1; Scml3" /note="sex comb on midleg homolog 1; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 mRNAs, 20 ESTs, 559 long SRA reads, 13 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 52 samples with support for all annotated introns" /db_xref="GeneID:29871" /db_xref="MGI:MGI:1352762" CDS 5547..7541 /gene="Scmh1" /gene_synonym="Scml1; Scml3" /codon_start=1 /product="polycomb protein SCMH1 isoform X1" /protein_id="XP_017175742.1" /db_xref="GeneID:29871" /db_xref="MGI:MGI:1352762" /translation="MLVCYSVLACESLWDLPCSIMGSPLGHFTWDKYLKETCSVPAPV HCFKQSYTPPSNEFKISMKLEAQDPRNTTSTCIATVVGLTGARLRLRLDGSDNKNDFW RLVDSSEIQPIGNCEKNGGMLQPPLGFRLNASSWPMFLLKTLNGAEMAPIKIFHKEPP SPSHNFFKMGMKLEAVDRKNPHFICPATIGEVRGAEVLVTFDGWRGAFDYWCRFDSRD IFPVGWCSLTGDNLQPPGTKVVIPKNPSPSSDVSTEKPSIHSTKTVLEHQPGQRGRKP GKKRGRTPKILIPHPTSTPSKSAEPLKFPKKRGPKPGSKRKPRTLLSPPPTSPTTSTP EPDTSTVPQDAATVPSSAMQAPTVCIYLNKSGSTGPHLDKKKIQQLPDHFGPARASVV LQQAVQACIDCAYHQKTVFSFLKQGHGGEVISAVFDREQHTLNLPAVNSITYVLRFLE KLCHNLRSDNLFGNQPFTQTHLSLTATEYNHNHDRYLPGETFVLGNSLARSLETHSDL MDSALKPANLVSTSQNLRTPGYRPLLPSCGLPLSTVSAVRRLCSKGVLKGKKERRDVE SFWKLNHSPGSDRHLESRDPPRLSGRDPSSWTVEDVMQFVREADPQLGSHADLFRKHE IDGKALLLLRSDMMMKYMGLKLGPALKLSFHIDRLKQGKF" ORIGIN 1 ttaccttgtc taatgttaat ggattgtttc ttccgttgat tcacacgtga catactttca 61 gatctctaac acaaagtcac catttttatt cttgtgtact atctttttct ctctgagtca 121 ggccaaactt aatgcccaca tgtgatgtta ctagtccagg acagaagtag gactggtgtg 181 cttctttctt gctttcattt atccaaaagt tttgactagg ctgcactaaa cttcaaggca 241 ctatgcttaa caatgagggt tgaataaaca gccttcatcc atcgacttta atcacagtga 301 tatgacagga tgagtgtgaa aagagcataa aggagttaag gaaaatcaga aggctttgca 361 gatgaaatcg tggttgtgtt gagtgacttc atatatagtg gtggtatggt acaaggtagt 421 tagagtgcgg tgctacggta ggaggccaag ccaagtatcc aaaaatttgt ttgaggaaac 481 tcttaagctt ccatctagaa taagtttaat gattctgagc ctgtgaagcc tcttgaaccc 541 agaccttttc caccccagat tccttgcctg aactctacag aaagcaaagc ctcttctctt 601 cattacctga aaagaacagt aacattgctc tagatatttc tattacaaca ccacctcaag 661 tgacctttct ttttctttct tttttcctca gtgaagaaac tacatgaaaa tgtttttcag 721 tgtcacagct gaaacttttt tactttgttt tgttttggtg tagttgggtt ggttttgttt 781 tgtgaggttt ttgttgttct tgttttgggt tttgtttaaa tgtttggtct ttgttttacc 841 caaccttctg ctctagtctt gaggcatttg atgaaagact atacatacta actcactcgt 901 acttctctgt gcatgaattt tttaaaaccc caaaccagat ggttggaatg tatatgaatg 961 aactcttgat gcattgattc tgggagctga gctgccactt gaaacttcct ttttagccag 1021 ggtatttgat aagcactttg ctgttagcta agaggttttg tggtatattt gagaaacatt 1081 aataatgcaa ataagttatt ttcagaagtt atattttggt ttgatgtttt atttttatct 1141 gatccattat aattttaaag ggttctagat gatggggtgt ttttttgttt tttttttttg 1201 ttttttgttt tttttttggt ttttttgaga cagggtttct ctgtagccct ggctgtcctg 1261 gaactcactc tgtagaacag gctggcctca aactcagaaa tccacctgcc tctgcctcct 1321 gagtgctggg attaaaggcg tgcaccacca ctgcccggcc ctggatgatg ttttgtgagt 1381 actgtttaac attagacatt ttaggacaac tggattttat tagaactata tatgccatca 1441 tttaataacc atctgaaaaa tgccaagaac acatagtatg taaagtatga attattaaaa 1501 gaacccagtc aagcaaatta tttaaattga ttatgaaatt acttgaagca atgtttctga 1561 tgctgagata gacagatgaa tgagaagaac agaatagtat ccagaaatag atctaagaat 1621 atataaaaaa ttaatacaaa agcggggatt tcaaatccat ggagaaaaaa tggtttattc 1681 agtagatgat attggagcac atttattaga gaaaaaagta aatgaggaaa gccagatgct 1741 tgtctcattt attttataat ctaaattaca aaaagattag tgcttacata taaaaaaaca 1801 aaactggaga tattcttgaa gaaaaaaata acttcatatt ttttataata taaacatata 1861 atataatatg tggtatgaaa aacaagaagc cataaaaggg atggtggaga aacataaggg 1921 caaaccctac tgaatgagac agcattttaa tgatatagag gaagggctaa tgtttgcaaa 1981 gaccttagac tctgtaagaa atggaagctt gttagcagaa agattgcaaa aaataaaaac 2041 taagtttcca aagatcttca accttattag taatcaaaga actgtccaaa aagtatatta 2101 gcatatcatt ttgttttgtt tggtttggtt tttactgttg agatttatca aatttcctag 2161 cacatgagaa gctaaggcag tagcattatt aggttgaggt cagcctagga taaataccaa 2221 gttccaggtc agactgggat atagaagtga gaccctatct taaaaaaaaa tcaaaagcta 2281 caaactgtca aaacataatt ttagcaaagg catgaataca tacttatata ctttatttat 2341 ctattctttg agaattttat acatgtatac aatgtatata caatctactc tctcttcatt 2401 catgtacttg tgatagtagt agaaattgga ctactctttg tagaggatat ttcagcaata 2461 tatattgtgt caaaacctaa aatatccagt ttgtctatta attctcctct ttggtatttt 2521 ccctaggaag accatcttag tcagactttc atcactaact aaaaccttag agtaggatga 2581 aacaagagag ggtgtggtat gaatatgacc aaaatgctcc tctggcttat tacataccaa 2641 gtaatcaacc tcttaattag attccatctt ctaccatttg accacttccc aggaatctac 2701 tgatagtctc aatctatcaa tagattaagt cattgattag gtcagagccc tcatgatgta 2761 ttcatctgtg ggaacacctt cctagaggcc caggaagatg ctttaataag ctcctaggtg 2821 tctctcagtc caaacaagtt aataattaag attaaccatc ccaaagatca ttttaaaagt 2881 acagatgggt acacaaagat aagcactaag acatcaggtg gtacttaaat gaccatcaca 2941 agttgttagg atatattaag ttacagggca tatgcacaat gaaacagtgt tttgacagta 3001 atcttggagt agaacttcta atctaaagac attgatcact attatttctc ttaaggactt 3061 ttcacatcta agtagaatga agtagagttc ttaaagggaa cataaccaga atagtagcca 3121 gttaaaatag ctgatgcaaa aatcaataat tttgcttcct tgttttttac atcatttttc 3181 acaccacttt atttcttcct ttcaaatgtt tatcacatct tttatttgtg tgctaggtgt 3241 gtcttatcat acaccagaat gcaaggtaaa ttccataagg aagggatttc tgttaaagta 3301 cctactctga aagatgctca ataaacgtgt gttggataaa taattgaaaa ctcaaattat 3361 aatatttgaa tgttttaaat aacatgtgaa cacttttaaa cacttgtttt atatgtgttt 3421 aaattataaa atactatatg tctgttaata atattagtca agtgattgca gaccccaagt 3481 atgaactaaa tttcccttta ctggccttgg agaggtggct taacaattta gagcacttga 3541 tgctcctgaa gaggacctca gtttggttcc cagcacccag gtcaggtggc tcatctgtaa 3601 ctctaactct aaggagattg gtggcccttt tttttggact ctgtggacac ccatacacat 3661 gtgtgcatac tcaaacactg acataacaca cataattaaa ataacaaaaa tgaaatatta 3721 aaattttcct atactacatt ctcatagtga tccgttccac cttgttaaac ttaattacaa 3781 tattacataa gcaagtattc tgcttatcta gtaactgaaa gtgtcataac atctaacaca 3841 gttctttata cttgaaaggg tattatgtag gtatcaaatg aagaatttat atgcaattgt 3901 atgtatgcat tgtgtataca actttctcca tctttcagct gagtaaactg aggcttggaa 3961 ggttaagttt gcccaagata tttgctataa aagcaacatt ttttgacttc caatatatga 4021 aaaaatacca gtagtccata aaccagagta ccagagtcct tgaaactact gagtgaaaac 4081 tttgaagaaa tgagagcact taggagcacg gttttggaat caacaattag accctgtgtt 4141 gtgaaactac tattggaggc ccatactcag tctgccagct gcttttagca aggctttcta 4201 gatgcaagct ttcattgtta tttccaactg tctgctgctc tgtcacacca cagtggctta 4261 gtgtaagaac tgtgacatgg actaggtagc ttccatagca taatagtttt gttatcttta 4321 aaaaaaaaaa aaactaactc ttgatatata ccttgtttac tgtcatttct tttgtgatta 4381 ttttaatgct tgcagattca gaagtcatat aatagctgac tttatgataa acatgaaaga 4441 atgtgtttaa ataatctggt taggtttctc tcatttcctc cctctccctc tcctccccct 4501 gcccccacac ctgttgataa cccaggcaat caaatagaag aaaaaaaaat atggttcaaa 4561 gcagtgagcc atcatggtgg gtgagctgta aattcctctt cactcagtaa caagagactt 4621 cttacatggt atttgcttgg ggtttctggg ctttttacct tatagcacag gaattgatta 4681 gcatggttga tctgtgtgat aggcaactgt aactaatgcc atcataattc ttaaaaccag 4741 agtctcttgg gtacttttga tcagaactca tgctaataaa aacagttgcc cagcattggc 4801 catacatttt aacctctgct tcctaacaca ttaggtatga gccttatgta cattttaaaa 4861 ttatttgaag ttaaataaaa gttaaaattt agttccttac actagtcaca tttaaaatat 4921 tcagaagtta tatgtagtat tatgtagcta gtgttatctt acagggtaca tagttcattt 4981 ctgtcagcac agaaatatag ttgaactgga ctttctgctc tagatggtag tgagcttaag 5041 ggtctcagtc cagtgaaatt caggatttaa aagttgactt aaatatttca cttgtaaaga 5101 tgtaataata atttgcaatg ttttcttttt ctaatagcaa gtaatgataa cattattcat 5161 tcttcaactt aagaccttct caactaatag ctataacata atactatcaa aattgaattt 5221 tggtaacctc tttaaatctt cattccagga aattacccac tcgtttactg tatgggctgt 5281 ctagtcattc tgttagttgt agactggctt gtgaaatatt tccgagctga ttaggatttc 5341 tggccagact tacttgctta gttaagggtg gtgggaaagg gacaaaacag caggtataaa 5401 gctgacagag tgcgaagtct tggcatcgtc tttgtagtga tttagatgtc attattcagt 5461 gactcatttt tattcccagc atctagtgct ttttgcatgg cccaaagggg ccctgtgctg 5521 ctccactaca gaggaaaatt caagaaatgc tggtttgcta cagtgtttta gcttgtgaga 5581 gtctctggga ccttccctgc tccatcatgg ggtcacctct aggtcatttt acctgggaca 5641 aatacctaaa agaaacatgt tcagtcccag cgcctgtcca ttgcttcaag cagtcctaca 5701 cacctccaag taatgagttc aagatcagca tgaaattgga agcacaggat cccaggaaca 5761 ccacatccac ctgtattgcc acggtcgttg gattgacagg tgcccgactt cgtctgcgcc 5821 ttgatggcag tgacaacaag aatgacttct ggagactggt tgactcctct gaaatccagc 5881 caattggaaa ctgtgagaag aatggcggga tgctgcagcc ccctctagga tttcggctga 5941 atgcctcctc ttggcccatg ttccttttga agacactaaa tggagcagag atggctccca 6001 tcaagatttt ccataaggag ccaccatcac cttcccacaa cttcttcaaa atgggaatga 6061 agttagaagc tgtagacaga aagaaccctc atttcatttg cccagccact attggagaag 6121 ttcgaggcgc agaagtgcta gtcacctttg atgggtggcg aggcgcattt gactactggt 6181 gccgctttga ctcccgggac atctttcctg tgggctggtg ttctttgact ggagataacc 6241 tgcagccacc tggcaccaaa gttgtgattc caaagaatcc gtccccttca tctgatgtga 6301 gcactgagaa gcccagcatc cacagcacca aaactgtctt ggagcatcag ccagggcaga 6361 ggggccgcaa accaggaaag aagcggggcc gaacacccaa gatccttatt ccccatccca 6421 cctctacccc atccaagtca gctgaacctt tgaaatttcc aaagaagaga ggtcccaagc 6481 ctggcagtaa gaggaaacct cggactttgc tgagcccacc acccacctca ccaacaacca 6541 gcacccctga accggacacc agcactgttc ctcaagatgc tgccaccgtc ccaagttcag 6601 ccatgcaggc ccccacagtt tgtatctact tgaacaagag cggcagcacg ggcccccacc 6661 tggataagaa gaagatccaa caactccctg accattttgg gccagcccgt gcctctgtgg 6721 tgctgcagca ggctgtccag gcttgcattg actgtgctta tcaccagaaa actgtcttca 6781 gcttcctcaa acagggccac ggcggtgaag tcatttcagc cgtgtttgac cgggaacagc 6841 acactctgaa cctcccagca gtcaacagca tcacctatgt cctccgtttc ctggagaagc 6901 tctgccacaa ccttcgaagt gacaatctgt ttggcaacca gccctttaca cagactcact 6961 tatcactcac tgccacagag tataatcaca accacgacag gtacctacca ggtgaaacct 7021 ttgtcctggg gaatagcctg gcccggtcct tggagacaca ctcagacctg atggattctg 7081 ccttgaagcc tgccaacctt gtcagcacat cccaaaacct tcggactcct ggctatcggc 7141 ccttgcttcc ctcctgtggc ctcccattaa gcactgtctc tgctgtgcgt aggctctgct 7201 ctaagggagt gttaaaagga aaaaaggaaa gaagggatgt ggagtcattt tggaaactaa 7261 atcattcccc agggtcagat cgacatctgg agagccgaga tccccctcgc ctgagtggcc 7321 gggacccctc ctcatggaca gtggaggatg tgatgcagtt tgtccgggaa gccgatcctc 7381 agcttggatc ccatgctgac ctcttccgaa aacatgaaat cgatggcaag gccctgctcc 7441 tgctgcgcag tgacatgatg atgaagtaca tgggcctgaa gctggggccc gccctcaagc 7501 tctcctttca cattgaccgg ctgaagcagg gcaagttctg aacaggaggc actcttctcc 7561 caggaagccg cccgccagct cccaggcacc ttagtagggc tctgggtgac ctcaggactc 7621 taggaggctg gaaagccacc actgctaccc ttcctgccct gatgtgtcct tccatgaagg 7681 actgaggagg gaacagtggg cccggggctg gtgctgctct tccccttagc ctgctgtggc 7741 tcccaggccc ttctatttat ttctcaaggc tagccagcct ctctccacaa gtttagacga 7801 gcacctttca agagatgagg aagacgccag ccctaggacc ttgaaaggcc ctggtaccca 7861 ggccccttgc cacctcctgg gcttggcata gtgtcccaag gcccccagct catgccttct 7921 cactggatcc ccagactctg aacttatggt gcagaccttt tttaaagaga tcctttctta 7981 ttgctaattt attgcttctg gcgtttggac ttaatgcttc tcttgcacca aacagttttt 8041 tggaagaggg agaccatcct ctggtccaga gagggcctct ccagagaagt gtggcctatt 8101 tcagaagaca ctgccctagg gcacttcttc tctggaatgg acaaagtatt tggctcactg 8161 agcaaaaggt gagggtctct cttcctacac tgggtccttt gtagccccag tcttcatctc 8221 tgatggagtt tcccctctcc ctgcccccac agctccctgc cctggtcaga attgctgcaa 8281 aagatggggc ctaatgcaat taggtcacgg ggccccaatg gtgggaggag gacctcaagg 8341 ctggaggagt tctgccctct gctagctcct gtgctttcct cctaagcaag tcagcagcac 8401 tgctgccccc actgccatct gaactatttt gtgtccgttt gtttataaat aaaaaccaat 8461 acaaatgcc //
Whole sequence Selected region from: to:
All features Gene, RNA, and CDS features only
Show sequence Show reverse complement Show gap features
Your browsing activity is empty.
Activity recording is turned off.
Turn recording back on