LOCUS NM_111802 661 bp mRNA linear PLN 20-OCT-2022
DEFINITION Arabidopsis thaliana Ribosomal protein S12/S23 family protein
(AT3G09680), mRNA.
ACCESSION NM_111802
VERSION NM_111802.1
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 661)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 661)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 661)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (bases 1 to 661)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
This record is derived from an annotated genomic sequence
(NC_003074).
FEATURES Location/Qualifiers
source 1..661
/organism="Arabidopsis thaliana"
/mol_type="mRNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
gene 1..661
/locus_tag="AT3G09680"
/db_xref="Araport:AT3G09680"
/db_xref="GeneID:820125"
/db_xref="TAIR:AT3G09680"
CDS 81..509
/locus_tag="AT3G09680"
/inference="Similar to RNA sequence,
EST:INSD:EG502084.1,INSD:DR290416.1,INSD:DR379381.1,
INSD:BP822734.1,INSD:EG502083.1"
/inference="Similar to RNA sequence, mRNA:INSD:AY084484.1"
/note="Ribosomal protein S12/S23 family protein; FUNCTIONS
IN: structural constituent of ribosome; INVOLVED IN:
translation; LOCATED IN: cytosolic small ribosomal
subunit, cytosolic ribosome, ribosome, nucleolus; CONTAINS
InterPro DOMAIN/s: Ribosomal protein S23,
eukaryotic/archaeal (InterPro:IPR005680), Ribosomal
protein S12/S23 (InterPro:IPR006032), Nucleic
acid-binding, OB-fold (InterPro:IPR012340), Nucleic
acid-binding, OB-fold-like (InterPro:IPR016027); BEST
Arabidopsis thaliana protein match is: Ribosomal protein
S12/S23 family protein (TAIR:AT5G02960.1); Has 9046 Blast
hits to 9043 proteins in 3116 species: Archae - 259;
Bacteria - 5143; Metazoa - 487; Fungi - 298; Plants - 975;
Viruses - 0; Other Eukaryotes - 1884 (source: NCBI
BLink)."
/codon_start=1
/product="Ribosomal protein S12/S23 family protein"
/protein_id="NP_566351.1"
/db_xref="GeneID:820125"
/db_xref="TAIR:AT3G09680"
/db_xref="Araport:AT3G09680"
/translation="MGKTRGMGAGRKLKQLRITQRWADKHYKKSNRGNEWKKPFACSS
HAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIA
GFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS"
ORIGIN
1 aatctctcac gaacttaaaa cgtcgcgcct ttagcagttt cagctcatct ctcgactttt
61 tcactcgcgc cgtcgtcaac atgggtaaga cacgtggtat gggagctggt cgcaagctta
121 agcagcttcg gattactcag aggtgggcgg acaagcatta caagaagtct aatcgaggca
181 acgagtggaa gaagcctttt gcttgttctt ctcacgctaa aggaatcgtt cttgagaaaa
241 ttggtattga ggctaagcag cctaactctg ctatccgtaa gtgtgctaga gttcagttga
301 tcaagaatgg taaaaagatt gctgcctttg tccccaatga tggttgtttg aactacattg
361 aagaaaatga cgaggtgttg attgctggat ttgggcgtaa aggtcatgcc gtcggagata
421 ttcccggagt taggttcaaa gtggtgaagg tctctggtgt ctcactcttg gcccttttca
481 aggaaaagaa ggagaagcct aggtcttgag ctctactaca ttttatgaat tttttttgat
541 atttgaaggc atgtctatgt acttattcag tgacatctct tattctattt tcctccgagt
601 tgaggttaat tttgtttgga ttctaattta tttattcaaa ttcataatta gttttggatt
661 c
//