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Arabidopsis thaliana Ribosomal protein S12/S23 family protein (AT3G09680), mRNA

NCBI Reference Sequence: NM_111802.1

FASTA Graphics 

LOCUS       NM_111802                661 bp    mRNA    linear   PLN 20-OCT-2022
DEFINITION  Arabidopsis thaliana Ribosomal protein S12/S23 family protein
            (AT3G09680), mRNA.
ACCESSION   NM_111802
VERSION     NM_111802.1
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (bases 1 to 661)
  AUTHORS   Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
            Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
            Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
            Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
            Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
            Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
            Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
            Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
            Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
            Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
            Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
            Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
            Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
            Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
            Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
            Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
            Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
            Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
            Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
            Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
            Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
            Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
            Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
            Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
            Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
            Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
            Yamada,M., Yasuda,M. and Tabata,S.
  CONSRTM   European Union Chromosome 3 Arabidopsis Sequencing Consortium;
            Institute for Genomic Research; Kazusa DNA Research Institute
  TITLE     Sequence and analysis of chromosome 3 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 408 (6814), 820-822 (2000)
   PUBMED   11130713
REFERENCE   2  (bases 1 to 661)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 661)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (bases 1 to 661)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            This record is derived from an annotated genomic sequence
            (NC_003074).
FEATURES             Location/Qualifiers
     source          1..661
                     /organism="Arabidopsis thaliana"
                     /mol_type="mRNA"
                     /db_xref="taxon:3702"
                     /chromosome="3"
                     /ecotype="Columbia"
     gene            1..661
                     /locus_tag="AT3G09680"
                     /db_xref="Araport:AT3G09680"
                     /db_xref="GeneID:820125"
                     /db_xref="TAIR:AT3G09680"
     CDS             81..509
                     /locus_tag="AT3G09680"
                     /inference="Similar to RNA sequence,
                     EST:INSD:EG502084.1,INSD:DR290416.1,INSD:DR379381.1,
                     INSD:BP822734.1,INSD:EG502083.1"
                     /inference="Similar to RNA sequence, mRNA:INSD:AY084484.1"
                     /note="Ribosomal protein S12/S23 family protein; FUNCTIONS
                     IN: structural constituent of ribosome; INVOLVED IN:
                     translation; LOCATED IN: cytosolic small ribosomal
                     subunit, cytosolic ribosome, ribosome, nucleolus; CONTAINS
                     InterPro DOMAIN/s: Ribosomal protein S23,
                     eukaryotic/archaeal (InterPro:IPR005680), Ribosomal
                     protein S12/S23 (InterPro:IPR006032), Nucleic
                     acid-binding, OB-fold (InterPro:IPR012340), Nucleic
                     acid-binding, OB-fold-like (InterPro:IPR016027); BEST
                     Arabidopsis thaliana protein match is: Ribosomal protein
                     S12/S23 family protein (TAIR:AT5G02960.1); Has 9046 Blast
                     hits to 9043 proteins in 3116 species: Archae - 259;
                     Bacteria - 5143; Metazoa - 487; Fungi - 298; Plants - 975;
                     Viruses - 0; Other Eukaryotes - 1884 (source: NCBI
                     BLink)."
                     /codon_start=1
                     /product="Ribosomal protein S12/S23 family protein"
                     /protein_id="NP_566351.1"
                     /db_xref="GeneID:820125"
                     /db_xref="TAIR:AT3G09680"
                     /db_xref="Araport:AT3G09680"
                     /translation="MGKTRGMGAGRKLKQLRITQRWADKHYKKSNRGNEWKKPFACSS
                     HAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIA
                     GFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS"
ORIGIN      
        1 aatctctcac gaacttaaaa cgtcgcgcct ttagcagttt cagctcatct ctcgactttt
       61 tcactcgcgc cgtcgtcaac atgggtaaga cacgtggtat gggagctggt cgcaagctta
      121 agcagcttcg gattactcag aggtgggcgg acaagcatta caagaagtct aatcgaggca
      181 acgagtggaa gaagcctttt gcttgttctt ctcacgctaa aggaatcgtt cttgagaaaa
      241 ttggtattga ggctaagcag cctaactctg ctatccgtaa gtgtgctaga gttcagttga
      301 tcaagaatgg taaaaagatt gctgcctttg tccccaatga tggttgtttg aactacattg
      361 aagaaaatga cgaggtgttg attgctggat ttgggcgtaa aggtcatgcc gtcggagata
      421 ttcccggagt taggttcaaa gtggtgaagg tctctggtgt ctcactcttg gcccttttca
      481 aggaaaagaa ggagaagcct aggtcttgag ctctactaca ttttatgaat tttttttgat
      541 atttgaaggc atgtctatgt acttattcag tgacatctct tattctattt tcctccgagt
      601 tgaggttaat tttgtttgga ttctaattta tttattcaaa ttcataatta gttttggatt
      661 c
//
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Reference sequence information

  • RefSeq protein product
    See the reference protein sequence for Ribosomal protein S12/S23 family protein (NP_566351.1).

More about the AT3G09680 gene

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