LOCUS NM_126968 1554 bp mRNA linear PLN 20-OCT-2022
DEFINITION Arabidopsis thaliana Cysteine/Histidine-rich C1 domain family
protein (AT2G13950), partial mRNA.
ACCESSION NM_126968
VERSION NM_126968.1
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 1554)
AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
Venter,J.C.
TITLE Sequence and analysis of chromosome 2 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 761-768 (1999)
PUBMED 10617197
REFERENCE 2 (bases 1 to 1554)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 1554)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (bases 1 to 1554)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
This record is derived from an annotated genomic sequence
(NC_003071).
COMPLETENESS: incomplete on both ends.
FEATURES Location/Qualifiers
source 1..1554
/organism="Arabidopsis thaliana"
/mol_type="mRNA"
/db_xref="taxon:3702"
/chromosome="2"
/ecotype="Columbia"
gene <1..>1554
/locus_tag="AT2G13950"
/gene_synonym="F9B22.6; F9B22_6"
/db_xref="Araport:AT2G13950"
/db_xref="GeneID:815879"
/db_xref="TAIR:AT2G13950"
CDS 1..1554
/locus_tag="AT2G13950"
/gene_synonym="F9B22.6; F9B22_6"
/note="Cysteine/Histidine-rich C1 domain family protein;
FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to
cold; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s:
Zinc finger, RING-type (InterPro:IPR001841), DC1
(InterPro:IPR004146), Zinc finger, PHD-type
(InterPro:IPR001965), Zinc finger, RanBP2-type
(InterPro:IPR001876), C1-like (InterPro:IPR011424); BEST
Arabidopsis thaliana protein match is:
Cysteine/Histidine-rich C1 domain family protein
(TAIR:AT5G02340.1); Has 1256 Blast hits to 611 proteins in
25 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi
- 0; Plants - 1236; Viruses - 0; Other Eukaryotes - 4
(source: NCBI BLink)."
/codon_start=1
/product="Cysteine/Histidine-rich C1 domain family
protein"
/protein_id="NP_179012.1"
/db_xref="Araport:AT2G13950"
/db_xref="GeneID:815879"
/db_xref="TAIR:AT2G13950"
/translation="MLDSHNRGLICKLPVVPLFWCNNKEPNGADFCCSACKLTNLGTA
YYFCATCRKKFHKECVESPLEIKHPSYPFQSLQLYSSPFALVNCICCDISFQDIIYHS
SNHKLSMHPVCAMKPVPIFIDHTKRHPHPLTFSPREAFLPCNVCGLIKESILTYVCVP
CDFVVHQDCLYFTHVIKISRHHHRIIFTSSLPYGKWSCGVCRREVDNHYGAYSCIKCG
DYFVHTRCALRKDVWNGEDLEGVPEEPEIDVEPYETIADGIILHFSHDHHLKLEINRV
YDENKFCQACILPIYEGTYYSCLDKCEFILHEACVNAPRKKHHPLHTHPLTLKVVSIG
YDHYRRRGNYFDCGACKRASCGFVYDSQDFSLDLRCASISEPFQYQGHKHPLFLALEP
DEEKAAICQICQEDGDGNNYIRKLNCMECKYIICFRCATLPYKAKYKHDKHFLTFREG
EEGSDQLDWCEVCEKKLIYSRKGGFYACDDCCTTLHVDCLLGEMSLFDGLNVIIAGAS
SFTSRSLLF"
ORIGIN
1 atgcttgatt ctcacaaccg cggtcttatc tgtaagctcc ctgttgtccc tctcttttgg
61 tgcaacaata aagaacctaa tggtgccgac ttctgttgta gtgcatgcaa actcacaaat
121 cttggcacag cctactattt ttgtgccaca tgtcgtaaga agttccacaa agaatgtgtg
181 gagtctccac ttgaaatcaa acacccttcc tatccctttc aatctctcca actttatagt
241 tctccctttg ctcttgtgaa ttgcatatgt tgtgatataa gtttccaaga cattatttat
301 cattcttcta atcacaaact gagtatgcat cctgtttgtg cgatgaaacc agtacccatt
361 tttatagacc acacaaaaag acatccccac cctctcactt tttcccctag ggaagctttc
421 ttaccttgca atgtttgcgg cctgattaaa gaatctattc tcacctatgt ttgtgttcca
481 tgtgactttg tagtccatca agattgtcta tatttcacgc atgtcataaa aatatctcgt
541 caccaccacc gtatcatttt tacctcttct cttccatatg gaaaatggtc ttgcggagtc
601 tgtcgtaggg aggttgacaa tcattatggt gcttactctt gcatcaagtg tggtgattat
661 tttgttcata caagatgtgc attgcgaaaa gatgtgtgga atggagaaga tctcgaggga
721 gtacctgaag aacctgagat agatgttgag ccatacgaga cgatagctga tggaattata
781 ctccattttt ctcatgacca tcatctaaaa ctcgagatca atagagttta cgatgaaaac
841 aagttttgtc aagcgtgcat ccttccaatc tatgagggta cgtactattc atgtttggat
901 aaatgtgaat tcatcctaca tgaagcatgc gttaatgccc ctagaaagaa acaccatccg
961 ttgcatactc acccgcttac gcttaaggtc gtcagtattg gatacgatca ttacagaaga
1021 agaggaaatt acttcgactg tggtgcttgt aagcgtgcaa gttgtggttt tgtctatgat
1081 agtcaggatt tctcacttga tttgcggtgt gcctctattt ccgaaccatt tcaatatcaa
1141 ggccacaagc atcccttatt tctagcctta gagccagatg aagaaaaagc ggcgatatgt
1201 caaatttgcc aagaagatgg tgatggaaat aactatatta gaaaactaaa ttgcatggaa
1261 tgcaagtata ttatttgttt caggtgtgct acattgccat acaaggcaaa gtacaagcat
1321 gacaaacatt tcctcacatt tcgggaaggg gaagagggaa gtgatcaatt agactggtgt
1381 gaggtatgcg aaaagaaatt aatatactca agaaaaggtg ggttctatgc gtgtgatgac
1441 tgttgcacca ctctccatgt tgattgtttg cttggggaga tgagtttgtt cgatggatta
1501 aatgtcatca tcgccggtgc ttcgtcgttt acttctagat ctctactttt ctag
//