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Arabidopsis thaliana Cysteine/Histidine-rich C1 domain family protein (AT2G13950), partial mRNA

NCBI Reference Sequence: NM_126968.1

FASTA Graphics 

LOCUS       NM_126968               1554 bp    mRNA    linear   PLN 20-OCT-2022
DEFINITION  Arabidopsis thaliana Cysteine/Histidine-rich C1 domain family
            protein (AT2G13950), partial mRNA.
ACCESSION   NM_126968
VERSION     NM_126968.1
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (bases 1 to 1554)
  AUTHORS   Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
            Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
            Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
            Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
            Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
            Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
            Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
            Venter,J.C.
  TITLE     Sequence and analysis of chromosome 2 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 402 (6763), 761-768 (1999)
   PUBMED   10617197
REFERENCE   2  (bases 1 to 1554)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 1554)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (bases 1 to 1554)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            This record is derived from an annotated genomic sequence
            (NC_003071).
            COMPLETENESS: incomplete on both ends.
FEATURES             Location/Qualifiers
     source          1..1554
                     /organism="Arabidopsis thaliana"
                     /mol_type="mRNA"
                     /db_xref="taxon:3702"
                     /chromosome="2"
                     /ecotype="Columbia"
     gene            <1..>1554
                     /locus_tag="AT2G13950"
                     /gene_synonym="F9B22.6; F9B22_6"
                     /db_xref="Araport:AT2G13950"
                     /db_xref="GeneID:815879"
                     /db_xref="TAIR:AT2G13950"
     CDS             1..1554
                     /locus_tag="AT2G13950"
                     /gene_synonym="F9B22.6; F9B22_6"
                     /note="Cysteine/Histidine-rich C1 domain family protein;
                     FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to
                     cold; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s:
                     Zinc finger, RING-type (InterPro:IPR001841), DC1
                     (InterPro:IPR004146), Zinc finger, PHD-type
                     (InterPro:IPR001965), Zinc finger, RanBP2-type
                     (InterPro:IPR001876), C1-like (InterPro:IPR011424); BEST
                     Arabidopsis thaliana protein match is:
                     Cysteine/Histidine-rich C1 domain family protein
                     (TAIR:AT5G02340.1); Has 1256 Blast hits to 611 proteins in
                     25 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi
                     - 0; Plants - 1236; Viruses - 0; Other Eukaryotes - 4
                     (source: NCBI BLink)."
                     /codon_start=1
                     /product="Cysteine/Histidine-rich C1 domain family
                     protein"
                     /protein_id="NP_179012.1"
                     /db_xref="Araport:AT2G13950"
                     /db_xref="GeneID:815879"
                     /db_xref="TAIR:AT2G13950"
                     /translation="MLDSHNRGLICKLPVVPLFWCNNKEPNGADFCCSACKLTNLGTA
                     YYFCATCRKKFHKECVESPLEIKHPSYPFQSLQLYSSPFALVNCICCDISFQDIIYHS
                     SNHKLSMHPVCAMKPVPIFIDHTKRHPHPLTFSPREAFLPCNVCGLIKESILTYVCVP
                     CDFVVHQDCLYFTHVIKISRHHHRIIFTSSLPYGKWSCGVCRREVDNHYGAYSCIKCG
                     DYFVHTRCALRKDVWNGEDLEGVPEEPEIDVEPYETIADGIILHFSHDHHLKLEINRV
                     YDENKFCQACILPIYEGTYYSCLDKCEFILHEACVNAPRKKHHPLHTHPLTLKVVSIG
                     YDHYRRRGNYFDCGACKRASCGFVYDSQDFSLDLRCASISEPFQYQGHKHPLFLALEP
                     DEEKAAICQICQEDGDGNNYIRKLNCMECKYIICFRCATLPYKAKYKHDKHFLTFREG
                     EEGSDQLDWCEVCEKKLIYSRKGGFYACDDCCTTLHVDCLLGEMSLFDGLNVIIAGAS
                     SFTSRSLLF"
ORIGIN      
        1 atgcttgatt ctcacaaccg cggtcttatc tgtaagctcc ctgttgtccc tctcttttgg
       61 tgcaacaata aagaacctaa tggtgccgac ttctgttgta gtgcatgcaa actcacaaat
      121 cttggcacag cctactattt ttgtgccaca tgtcgtaaga agttccacaa agaatgtgtg
      181 gagtctccac ttgaaatcaa acacccttcc tatccctttc aatctctcca actttatagt
      241 tctccctttg ctcttgtgaa ttgcatatgt tgtgatataa gtttccaaga cattatttat
      301 cattcttcta atcacaaact gagtatgcat cctgtttgtg cgatgaaacc agtacccatt
      361 tttatagacc acacaaaaag acatccccac cctctcactt tttcccctag ggaagctttc
      421 ttaccttgca atgtttgcgg cctgattaaa gaatctattc tcacctatgt ttgtgttcca
      481 tgtgactttg tagtccatca agattgtcta tatttcacgc atgtcataaa aatatctcgt
      541 caccaccacc gtatcatttt tacctcttct cttccatatg gaaaatggtc ttgcggagtc
      601 tgtcgtaggg aggttgacaa tcattatggt gcttactctt gcatcaagtg tggtgattat
      661 tttgttcata caagatgtgc attgcgaaaa gatgtgtgga atggagaaga tctcgaggga
      721 gtacctgaag aacctgagat agatgttgag ccatacgaga cgatagctga tggaattata
      781 ctccattttt ctcatgacca tcatctaaaa ctcgagatca atagagttta cgatgaaaac
      841 aagttttgtc aagcgtgcat ccttccaatc tatgagggta cgtactattc atgtttggat
      901 aaatgtgaat tcatcctaca tgaagcatgc gttaatgccc ctagaaagaa acaccatccg
      961 ttgcatactc acccgcttac gcttaaggtc gtcagtattg gatacgatca ttacagaaga
     1021 agaggaaatt acttcgactg tggtgcttgt aagcgtgcaa gttgtggttt tgtctatgat
     1081 agtcaggatt tctcacttga tttgcggtgt gcctctattt ccgaaccatt tcaatatcaa
     1141 ggccacaagc atcccttatt tctagcctta gagccagatg aagaaaaagc ggcgatatgt
     1201 caaatttgcc aagaagatgg tgatggaaat aactatatta gaaaactaaa ttgcatggaa
     1261 tgcaagtata ttatttgttt caggtgtgct acattgccat acaaggcaaa gtacaagcat
     1321 gacaaacatt tcctcacatt tcgggaaggg gaagagggaa gtgatcaatt agactggtgt
     1381 gaggtatgcg aaaagaaatt aatatactca agaaaaggtg ggttctatgc gtgtgatgac
     1441 tgttgcacca ctctccatgt tgattgtttg cttggggaga tgagtttgtt cgatggatta
     1501 aatgtcatca tcgccggtgc ttcgtcgttt acttctagat ctctactttt ctag
//
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Reference sequence information

  • RefSeq protein product
    See the reference protein sequence for Cysteine/Histidine-rich C1 domain family protein (NP_179012.1).

More about the AT2G13950 gene

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