LOCUS NM_121927 1732 bp mRNA linear PLN 20-OCT-2022
DEFINITION Arabidopsis thaliana ADP glucose pyrophosphorylase large subunit 1
(APL1), mRNA.
ACCESSION NM_121927
VERSION NM_121927.3
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 1732)
AUTHORS Tabata,S., Kaneko,T., Nakamura,Y., Kotani,H., Kato,T., Asamizu,E.,
Miyajima,N., Sasamoto,S., Kimura,T., Hosouchi,T., Kawashima,K.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Naruo,K., Okumura,S., Shinpo,S., Takeuchi,C., Wada,T.,
Watanabe,A., Yamada,M., Yasuda,M., Sato,S., de la Bastide,M.,
Huang,E., Spiegel,L., Gnoj,L., O'Shaughnessy,A., Preston,R.,
Habermann,K., Murray,J., Johnson,D., Rohlfing,T., Nelson,J.,
Stoneking,T., Pepin,K., Spieth,J., Sekhon,M., Armstrong,J.,
Becker,M., Belter,E., Cordum,H., Cordes,M., Courtney,L.,
Courtney,W., Dante,M., Du,H., Edwards,J., Fryman,J., Haakensen,B.,
Lamar,E., Latreille,P., Leonard,S., Meyer,R., Mulvaney,E.,
Ozersky,P., Riley,A., Strowmatt,C., Wagner-McPherson,C., Wollam,A.,
Yoakum,M., Bell,M., Dedhia,N., Parnell,L., Shah,R., Rodriguez,M.,
See,L.H., Vil,D., Baker,J., Kirchoff,K., Toth,K., King,L.,
Bahret,A., Miller,B., Marra,M., Martienssen,R., McCombie,W.R.,
Wilson,R.K., Murphy,G., Bancroft,I., Volckaert,G., Wambutt,R.,
Dusterhoft,A., Stiekema,W., Pohl,T., Entian,K.D., Terryn,N.,
Hartley,N., Bent,E., Johnson,S., Langham,S.A., McCullagh,B.,
Robben,J., Grymonprez,B., Zimmermann,W., Ramsperger,U., Wedler,H.,
Balke,K., Wedler,E., Peters,S., van Staveren,M., Dirkse,W.,
Mooijman,P., Lankhorst,R.K., Weitzenegger,T., Bothe,G., Rose,M.,
Hauf,J., Berneiser,S., Hempel,S., Feldpausch,M., Lamberth,S.,
Villarroel,R., Gielen,J., Ardiles,W., Bents,O., Lemcke,K.,
Kolesov,G., Mayer,K., Rudd,S., Schoof,H., Schueller,C.,
Zaccaria,P., Mewes,H.W., Bevan,M. and Fransz,P.
CONSRTM Kazusa DNA Research Institute; Cold Spring Harbor and Washington
University in St Louis Sequencing Consortium; European Union
Arabidopsis Genome Sequencing Consortium
TITLE Sequence and analysis of chromosome 5 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 823-826 (2000)
PUBMED 11130714
REFERENCE 2 (bases 1 to 1732)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 1732)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (bases 1 to 1732)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
This record is derived from an annotated genomic sequence
(NC_003076).
On Apr 18, 2007 this sequence version replaced NM_121927.2.
FEATURES Location/Qualifiers
source 1..1732
/organism="Arabidopsis thaliana"
/mol_type="mRNA"
/db_xref="taxon:3702"
/chromosome="5"
/ecotype="Columbia"
gene 1..1732
/gene="APL1"
/locus_tag="AT5G19220"
/gene_synonym="ADG2; ADP GLUCOSE PYROPHOSPHORYLASE 2; ADP
glucose pyrophosphorylase large subunit 1; ADPG
PYROPHOSPHORYLASE; T24G5.120; T24G5_120"
/note="Encodes the large subunit of ADP-glucose
pyrophosphorylase which catalyzes the first, rate limiting
step in starch biosynthesis. The large subunit plays a
regulatory role whereas the small subunit (ApS) is the
catalytic isoform. Four isoforms (ApL1-4) have been
identified. ApL1 is the major large subunit isoform
present in leaves. Mutational analysis of APS1 suggests
that APL1 and APL2 can compensate for loss of APS1
catalytic activity,suggesting both have catalytic as well
as regulatory functions."
/db_xref="Araport:AT5G19220"
/db_xref="GeneID:832042"
/db_xref="TAIR:AT5G19220"
CDS 57..1625
/gene="APL1"
/locus_tag="AT5G19220"
/gene_synonym="ADG2; ADP GLUCOSE PYROPHOSPHORYLASE 2; ADP
glucose pyrophosphorylase large subunit 1; ADPG
PYROPHOSPHORYLASE; T24G5.120; T24G5_120"
/inference="Similar to RNA sequence,
EST:INSD:DR262683.1,INSD:EH916153.1,INSD:EH874937.1,
INSD:BP628767.1,INSD:EL140140.1,INSD:EL208883.1,
INSD:BP634233.1,INSD:EL157521.1,INSD:BP649330.1,
INSD:EL214553.1,INSD:EL011110.1,INSD:EL023917.1,
INSD:BP642503.1,INSD:EL122225.1,INSD:EL257096.1,
INSD:AV799043.1,INSD:EL173708.1,INSD:AV805461.1,
INSD:EH813966.1,INSD:EH796917.1,INSD:EG515934.1,
INSD:EL060566.1,INSD:CB262918.1,INSD:EH892354.1,
INSD:EL263780.1,INSD:EH970876.1,INSD:EL244845.1,
INSD:EH950456.1,INSD:EL128937.1,INSD:EH932806.1,
INSD:BP780502.1,INSD:EH974515.1,INSD:EL290692.1,
INSD:EH971060.1,INSD:AV814462.1,INSD:EL008377.1,
INSD:EH884484.1,INSD:EL247288.1,INSD:CA781572.1,
INSD:EL054609.1,INSD:BP784782.1,INSD:EL095246.1,
INSD:EL228852.1,INSD:EL183032.1,INSD:AV519982.1,
INSD:EL245856.1,INSD:AI997484.1,INSD:EL149934.1,
INSD:EH895670.1,INSD:EL199293.1,INSD:AU227915.1,
INSD:EL169884.1,INSD:EH893976.1,INSD:EL038256.1,
INSD:AV827704.1,INSD:EL246825.1,INSD:EL322014.1,
INSD:BP785764.1,INSD:EH850713.1,INSD:BP839211.1,
INSD:BP796154.1,INSD:EL161893.1,INSD:EL288515.1,
INSD:DR262682.1,INSD:EL113875.1,INSD:BP779272.1"
/inference="similar to RNA sequence,
mRNA:INSD:X73367.2,INSD:U72290.1,INSD:AF370503.1,
INSD:BT008884.1"
/note="ADP glucose pyrophosphorylase large subunit 1
(APL1); FUNCTIONS IN: glucose-1-phosphate
adenylyltransferase activity; INVOLVED IN: cellulose
biosynthetic process, biosynthetic process, glycogen
biosynthetic process; LOCATED IN: chloroplast, chloroplast
stroma, chloroplast envelope; EXPRESSED IN: 26 plant
structures; EXPRESSED DURING: 14 growth stages; CONTAINS
InterPro DOMAIN/s: Glucose-1-phosphate adenylyltransferase
(InterPro:IPR011831), ADP-glucose pyrophosphorylase,
conserved site (InterPro:IPR005836), Nucleotidyl
transferase (InterPro:IPR005835); BEST Arabidopsis
thaliana protein match is: ADPGLC-PPase large subunit
(TAIR:AT1G27680.1); Has 1807 Blast hits to 1807 proteins
in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736;
Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes -
339 (source: NCBI BLink)."
/codon_start=1
/product="ADP glucose pyrophosphorylase large subunit 1"
/protein_id="NP_197423.1"
/db_xref="GeneID:832042"
/db_xref="TAIR:AT5G19220"
/db_xref="Araport:AT5G19220"
/translation="MVVSADCRISLSAPSCIRSSSTGLTRHIKLGSFCNGELMGKKLN
LSQLPNIRLRSSTNFSQKRILMSLNSVAGESKVQELETEKRDPRTVASIILGGGAGTR
LFPLTKRRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNS
NGLGFGDGYVEVLAATQTPGESGKRWFQGTADAVRQFHWLFEDARSKDIEDVLILSGD
HLYRMDYMDFIQDHRQSGADISISCIPIDDRRASDFGLMKIDDKGRVISFSEKPKGDD
LKAMAVDTTILGLSKEEAEKKPYIASMGVYVFKKEILLNLLRWRFPTANDFGSEIIPF
SAKEFYVNAYLFNDYWEDIGTIRSFFEANLALTEHPGAFSFYDAAKPIYTSRRNLPPS
KIDNSKLIDSIISHGSFLTNCLIEHSIVGIRSRVGSNVQLKDTVMLGADYYETEAEVA
ALLAEGNVPIGIGENTKIQECIIDKNARVGKNVIIANSEGIQEADRSSDGFYIRSGIT
VILKNSVIKDGVVI"
ORIGIN
1 tctcttttat cttcccctct cttcaaaccc ttcaagagac aatctttcct gcgaaaatgg
61 tggtctctgc tgactgcaga atctccctct ctgcccctag ctgcatacgt agtagctcca
121 cgggattgac taggcacatt aagcttggca gcttctgcaa tggtgagctc atggggaaga
181 agctcaactt gtctcagctt ccaaacattc gtcttcgatc ttctactaac ttctctcaga
241 agagaatttt aatgtctcta aatagtgtag ctggggagag taaggtacaa gaacttgaga
301 ctgagaaaag ggatccaagg acagttgctt ccattattct tggaggtgga gcaggaactc
361 gactctttcc tctcacaaaa cgccgcgcca agcctgccgt tcctatcggg ggagcctata
421 ggttgataga tgtaccaatg agcaattgta ttaacagcgg aatcaacaaa gtctacatac
481 tcacacaata taactcagca tcattgaaca ggcatttagc ccgtgcttac aactccaatg
541 gacttggctt tggagatggc tatgttgagg ttcttgcggc cactcaaacg ccaggagaat
601 ctggtaaaag gtggttccaa ggtacagcag atgcggttcg gcaattccat tggcttttcg
661 aggatgcaag aagcaaggac atagaggatg tattgatcct ttctggagat cacctctaca
721 ggatggatta catggatttt atacaggatc atcggcagag tggcgcggat ataagcattt
781 cctgcatacc aatagatgac agacgtgcct cagattttgg gcttatgaag atagatgaca
841 aaggaagagt tatctcattc agtgaaaaac ctaaaggaga cgacctgaaa gcaatggcag
901 tagacacaac tattttagga ctttccaagg aggaagctga aaagaaacca tacatagctt
961 caatgggagt ttatgttttc aaaaaagaaa tactgttaaa tctcttgaga tggcgtttcc
1021 ccacagcaaa cgactttggt tcagagatta tacccttctc agctaaagaa ttctatgtga
1081 atgcttatct ctttaatgac tactgggaag atataggaac aataagatct ttcttcgagg
1141 cgaatcttgc actcactgag catcctgggg catttagttt ctacgacgcg gcaaaaccaa
1201 tatatacatc aaggagaaac ctgccaccat caaaaataga caactctaag ctcatcgatt
1261 caatcatttc tcatggaagc ttcttaacca actgcttgat tgagcatagc attgtgggaa
1321 ttagatcaag agtaggcagt aatgttcagt tgaaggacac tgtgatgctt ggggcagatt
1381 actacgaaac tgaagcagaa gttgcagcac tacttgctga gggaaacgtt cccattggaa
1441 taggagagaa cacaaaaatt caagaatgca taatagacaa gaatgctaga gttggaaaga
1501 atgtaatcat cgcaaactcg gagggaatac aagaagcaga taggtcatcc gatggatttt
1561 acatcagatc tggcattact gtaatcttga agaactcagt aattaaagat ggagttgtga
1621 tatgatactt ttaagatcta attgtaagaa ctgagaacta aaaaatgcag agcataaaag
1681 tcaacaataa attacaaaga aatttatttg atagtgatga cacttcacat at
//