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Arabidopsis thaliana uncharacterized protein (AT5G06270), mRNA

NCBI Reference Sequence: NM_120710.3

FASTA Graphics 

LOCUS       NM_120710               1639 bp    mRNA    linear   PLN 20-OCT-2022
DEFINITION  Arabidopsis thaliana uncharacterized protein (AT5G06270), mRNA.
ACCESSION   NM_120710
VERSION     NM_120710.3
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (bases 1 to 1639)
  AUTHORS   Tabata,S., Kaneko,T., Nakamura,Y., Kotani,H., Kato,T., Asamizu,E.,
            Miyajima,N., Sasamoto,S., Kimura,T., Hosouchi,T., Kawashima,K.,
            Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
            Nakazaki,N., Naruo,K., Okumura,S., Shinpo,S., Takeuchi,C., Wada,T.,
            Watanabe,A., Yamada,M., Yasuda,M., Sato,S., de la Bastide,M.,
            Huang,E., Spiegel,L., Gnoj,L., O'Shaughnessy,A., Preston,R.,
            Habermann,K., Murray,J., Johnson,D., Rohlfing,T., Nelson,J.,
            Stoneking,T., Pepin,K., Spieth,J., Sekhon,M., Armstrong,J.,
            Becker,M., Belter,E., Cordum,H., Cordes,M., Courtney,L.,
            Courtney,W., Dante,M., Du,H., Edwards,J., Fryman,J., Haakensen,B.,
            Lamar,E., Latreille,P., Leonard,S., Meyer,R., Mulvaney,E.,
            Ozersky,P., Riley,A., Strowmatt,C., Wagner-McPherson,C., Wollam,A.,
            Yoakum,M., Bell,M., Dedhia,N., Parnell,L., Shah,R., Rodriguez,M.,
            See,L.H., Vil,D., Baker,J., Kirchoff,K., Toth,K., King,L.,
            Bahret,A., Miller,B., Marra,M., Martienssen,R., McCombie,W.R.,
            Wilson,R.K., Murphy,G., Bancroft,I., Volckaert,G., Wambutt,R.,
            Dusterhoft,A., Stiekema,W., Pohl,T., Entian,K.D., Terryn,N.,
            Hartley,N., Bent,E., Johnson,S., Langham,S.A., McCullagh,B.,
            Robben,J., Grymonprez,B., Zimmermann,W., Ramsperger,U., Wedler,H.,
            Balke,K., Wedler,E., Peters,S., van Staveren,M., Dirkse,W.,
            Mooijman,P., Lankhorst,R.K., Weitzenegger,T., Bothe,G., Rose,M.,
            Hauf,J., Berneiser,S., Hempel,S., Feldpausch,M., Lamberth,S.,
            Villarroel,R., Gielen,J., Ardiles,W., Bents,O., Lemcke,K.,
            Kolesov,G., Mayer,K., Rudd,S., Schoof,H., Schueller,C.,
            Zaccaria,P., Mewes,H.W., Bevan,M. and Fransz,P.
  CONSRTM   Kazusa DNA Research Institute; Cold Spring Harbor and Washington
            University in St Louis Sequencing Consortium; European Union
            Arabidopsis Genome Sequencing Consortium
  TITLE     Sequence and analysis of chromosome 5 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 408 (6814), 823-826 (2000)
   PUBMED   11130714
REFERENCE   2  (bases 1 to 1639)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 1639)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (bases 1 to 1639)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            This record is derived from an annotated genomic sequence
            (NC_003076).
            
            On Sep 12, 2016 this sequence version replaced NM_120710.2.
FEATURES             Location/Qualifiers
     source          1..1639
                     /organism="Arabidopsis thaliana"
                     /mol_type="mRNA"
                     /db_xref="taxon:3702"
                     /chromosome="5"
                     /ecotype="Columbia"
     gene            1..1639
                     /locus_tag="AT5G06270"
                     /gene_synonym="MHF15.21; MHF15_21"
                     /db_xref="Araport:AT5G06270"
                     /db_xref="GeneID:830515"
                     /db_xref="TAIR:AT5G06270"
     CDS             806..1174
                     /locus_tag="AT5G06270"
                     /gene_synonym="MHF15.21; MHF15_21"
                     /inference="Similar to RNA sequence,
                     EST:INSD:EL302615.1,INSD:EG452195.1,INSD:EL328064.1,
                     INSD:ES112520.1,INSD:DR264767.1,INSD:ES118727.1,
                     INSD:EL239590.1,INSD:EL310944.1,INSD:ES077838.1,
                     INSD:EH805929.1,INSD:EL285972.1,INSD:DR264769.1,
                     INSD:EH897477.1,INSD:EL235050.1,INSD:BP847261.1,
                     INSD:ES178323.1,INSD:EL264036.1,INSD:EH908486.1,
                     INSD:ES064067.1,INSD:EL056129.1,INSD:EL115988.1,
                     INSD:EL314177.1,INSD:DR378981.1,INSD:AU227510.1,
                     INSD:ES183780.1,INSD:EH830200.1,INSD:EH847424.1,
                     INSD:EL162087.1,INSD:ES059348.1,INSD:EL998373.1,
                     INSD:ES136070.1,INSD:DR264770.1,INSD:AU236558.1,
                     INSD:ES184166.1,INSD:ES116360.1,INSD:EH873180.1"
                     /inference="similar to RNA sequence,
                     mRNA:INSD:BX833304.1,INSD:BT003828.1,INSD:AY084326.1,
                     INSD:BT005129.1,INSD:BX830226.1"
                     /note="unknown protein; FUNCTIONS IN: molecular_function
                     unknown; INVOLVED IN: biological_process unknown; LOCATED
                     IN: chloroplast; EXPRESSED IN: 21 plant structures;
                     EXPRESSED DURING: 11 growth stages; BEST Arabidopsis
                     thaliana protein match is: unknown protein
                     (TAIR:AT3G11600.1); Has 1807 Blast hits to 1807 proteins
                     in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736;
                     Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes -
                     339 (source: NCBI BLink)."
                     /codon_start=1
                     /product="uncharacterized protein"
                     /protein_id="NP_196245.1"
                     /db_xref="GeneID:830515"
                     /db_xref="TAIR:AT5G06270"
                     /db_xref="Araport:AT5G06270"
                     /translation="MSRRSPKLELKLNLSPPTSSQRRMVRSPSRSATTSPTSPPSSCV
                     SSEMNQDEPSVRYSTSPETTSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLHEN
                     ATNANANAAAASSGRKTRRN"
ORIGIN      
        1 gccaggaggt ggttcacttt atatatttgc attgtatttg ggttctctgt accaattctg
       61 gtgtgttgcc atttaatttt gtttgtgttt ctttaatttc aatttaattt ctttgactgt
      121 acatttttta ctttcgaaat tatgattttt cttcttcttc ttccaatttc aacttttatt
      181 ataaacatct aattcaagtt ggttgcccat ttaatttctt ggttccatat attaactcct
      241 atgaagaaaa taaaaataaa taatggttgt tctgttgagt atttaatttg atttctgtgt
      301 attagccatt aaacacctct cttgttcttt tcctcctcct atttaataag caatgaattg
      361 gattcctgca aatatctaca gattttcttg tgtatttatt aaaatacatt taagaaattt
      421 aaattactgg tttgaagttg aaaaaagtaa ttagaattcg atactcttga ggcaaaaatt
      481 aaatcaatta acgcaatctg atagtatgta tcgtctagta gtagtatact tcaattcaat
      541 ctttatgatt ctctctctct cacacagtcc tttctcactc ataattaaat taagccttaa
      601 tgaaaaatct atctatctcc tcctttaatt ttctctctgt gttctttctt gtatataaag
      661 gcctaagctc aagcaatcca accaccagtg gtaataagag agaagactct tctttttttt
      721 tggtagaaga agactcttct ttgtgataca agtaaccagt ctttgagatc acagaaaacc
      781 tccttctcaa accgtaggtt tcaagatgag tcgaagaagt ccaaagctgg aactgaagtt
      841 gaatctctcg ccgcctacgt caagccagag gaggatggtt cgatctccaa gccgctcagc
      901 gacgacttca ccgacctcac ctccaagctc atgcgtctcg tcggagatga accaggacga
      961 gccatctgtg agatactcga caagtccaga gactacctcg atggttcttg tcggatgtcc
     1021 tcgttgtctc atgtacgtta tgctctcaga agacgaccct aaatgcccta aatgcaaaag
     1081 caccgttctt cttgatttcc tccatgaaaa cgccacaaac gccaacgcaa acgcagccgc
     1141 tgcttcctct ggtcgcaaga ctcgaaggaa ctgatgaagg accagtaaaa tcaaaatcct
     1201 gttccttctt tatgttattt atttttcttt cgtttttttg cgaatgtagc tgttgttttt
     1261 atgagagtag tgctaatcac gctccactct aaaacccgga gaagaaggta ggagaaggaa
     1321 attagggttt ccctattcaa gaaaattttc aaaaagagtg gagcgcgaat agcactaact
     1381 tttctttttc ttttctctca acatttttct accatttgag ttctctaatg gaagaagaat
     1441 ttttaaatat atgtgaaaac atgtgtcatt gtcttcgtat tcctctactc tatctaattt
     1501 ctcatactct gtttcggatg ctctgtttct agggcatctc tgttttttgg atgtgtttgt
     1561 aaaaagaaaa tagaggtttt gtgtgtacga ctataacaaa agtagacatt cttagcgtag
     1621 cagagagatt gcttacaca
//
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