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Arabidopsis thaliana AtL5 (ATL5), mRNA

NCBI Reference Sequence: NM_116134.5

FASTA Graphics 

LOCUS       NM_116134               1373 bp    mRNA    linear   PLN 20-OCT-2022
DEFINITION  Arabidopsis thaliana AtL5 (ATL5), mRNA.
ACCESSION   NM_116134
VERSION     NM_116134.5
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (bases 1 to 1373)
  AUTHORS   Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
            Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
            Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
            Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
            Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
            Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
            Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
            Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
            Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
            Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
            Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
            Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
            Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
            Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
            Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
            Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
            Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
            Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
            Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
            Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
            Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
            Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
            Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
            Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
            Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
            Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
            Yamada,M., Yasuda,M. and Tabata,S.
  CONSRTM   European Union Chromosome 3 Arabidopsis Sequencing Consortium;
            Institute for Genomic Research; Kazusa DNA Research Institute
  TITLE     Sequence and analysis of chromosome 3 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 408 (6814), 820-822 (2000)
   PUBMED   11130713
REFERENCE   2  (bases 1 to 1373)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 1373)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (bases 1 to 1373)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            This record is derived from an annotated genomic sequence
            (NC_003074).
            
            On Sep 12, 2016 this sequence version replaced NM_116134.4.
FEATURES             Location/Qualifiers
     source          1..1373
                     /organism="Arabidopsis thaliana"
                     /mol_type="mRNA"
                     /db_xref="taxon:3702"
                     /chromosome="3"
                     /ecotype="Columbia"
     gene            1..1373
                     /gene="ATL5"
                     /locus_tag="AT3G62690"
                     /gene_synonym="AtL5"
                     /note="Encodes a RING-H2 zinc finger protein related to
                     ATL2. The ATL gene family is represented by fifteen
                     sequences that contain, in addition to the RING, a
                     transmembrane domain which is located in most of them
                     towards the N-terminal end."
                     /db_xref="Araport:AT3G62690"
                     /db_xref="GeneID:825443"
                     /db_xref="TAIR:AT3G62690"
     CDS             119..892
                     /gene="ATL5"
                     /locus_tag="AT3G62690"
                     /gene_synonym="AtL5"
                     /inference="Similar to RNA sequence,
                     EST:INSD:DR321070.1,INSD:EH913523.1,INSD:BP830833.1,
                     INSD:DR321072.1,INSD:EL238804.1,INSD:DR321068.1,
                     INSD:DR370942.1,INSD:DR321074.1,INSD:DR321073.1,
                     INSD:AU227070.1,INSD:BP562789.3,INSD:BP834843.1,
                     INSD:DR751305.1,INSD:DR321071.1,INSD:BP606250.1,
                     INSD:BP650733.1,INSD:DR321069.1,INSD:EL119256.1,
                     INSD:AI997856.1,INSD:BP576130.1,INSD:DR751306.1"
                     /inference="Similar to RNA sequence,
                     mRNA:INSD:BX823459.1,INSD:AK228355.1,INSD:AF132015.1,
                     INSD:BT009649.1,INSD:BX822389.1"
                     /note="AtL5 (ATL5); FUNCTIONS IN: zinc ion binding;
                     INVOLVED IN: protein complex assembly; LOCATED IN:
                     membrane; EXPRESSED IN: 6 plant structures; EXPRESSED
                     DURING: F mature embryo stage, petal differentiation and
                     expansion stage, E expanded cotyledon stage, D bilateral
                     stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type
                     (InterPro:IPR001841), Zinc finger, C3HC4 RING-type
                     (InterPro:IPR018957); BEST Arabidopsis thaliana protein
                     match is: RING/U-box superfamily protein
                     (TAIR:AT2G47560.1); Has 10661 Blast hits to 10636 proteins
                     in 314 species: Archae - 0; Bacteria - 0; Metazoa - 2642;
                     Fungi - 1094; Plants - 5229; Viruses - 125; Other
                     Eukaryotes - 1571 (source: NCBI BLink)."
                     /codon_start=1
                     /product="AtL5"
                     /protein_id="NP_191828.1"
                     /db_xref="GeneID:825443"
                     /db_xref="TAIR:AT3G62690"
                     /db_xref="Araport:AT3G62690"
                     /translation="MGNLFDSSKTLWGNMNHGSSRYSLNGKIMLASVIILFVAVILIL
                     CFHSYARWLFRRQNRRIRRRISAHLRSLAAARDPTQSSSSLSPLDPTVLEKIPIFVYS
                     VKTHESPLEECSVCLSEFEEDDEGRVLPKCGHVFHVDCIDTWFRSRSSCPLCRAPVQP
                     AQPVTEPEPVAAVFPSVKPIEDTEAGSSSSSDESESSTPSSSSGSPVRFPMEACEREP
                     IDLVGIIVEIPREFQDSNSDLPADNGSNRRASLKRLWII"
ORIGIN      
        1 aattatacca cattagaaac ttcccactct ctctctcgtt tgcttcttct tcatcgtttc
       61 acccactcac ttcattctct ctctaaaacc ttcactttct ctatctatct tcaaaacaat
      121 gggaaacctg tttgacagta gcaagacttt atggggaaac atgaaccatg gatcgtcacg
      181 ttactctcta aacggcaaaa tcatgcttgc ttccgtcatc atcctcttcg tcgccgtcat
      241 tttaatcctc tgtttccaca gctacgctag atggttattc cgccgtcaaa accgccgtat
      301 tcgccgccgt atcagtgctc acctccgatc actcgccgcc gctagagacc ccacccaatc
      361 atcatcctcc ctctctcctc ttgatccgac ggtgctcgag aagatcccta tcttcgtcta
      421 ctccgttaaa acccatgaat ctccgcttga ggaatgctct gtttgcttgt cggaattcga
      481 agaagacgac gaaggacgtg tccttcccaa atgcggccac gtgttccatg tcgattgtat
      541 agacacgtgg ttccggtcca gatcaagttg tcctctttgt agagctccgg ttcaacccgc
      601 acagccggtt accgaacccg aaccggttgc tgctgtgttt ccatcggtta aaccaattga
      661 ggataccgaa gccggaagtt cctcttcatc ggacgaatcc gaatcctcga cgccgtcttc
      721 ctcctctggt tcgccggtga ggtttccgat ggaagcttgt gagagagaac cgattgattt
      781 agtcggtatc attgtggaga ttcccaggga atttcaagat tctaattcgg atctacccgc
      841 agataacggg tcgaatcgtc gggcttcgtt gaaaaggcta tggattattt gatcacataa
      901 ttggatagtg actgaatccg acccggtaaa tgggtgggca taataattcg gattctgaag
      961 atccggtaat atgacgcagc gggcagaatc gtattactgg catggaagac gacacgtggc
     1021 gtttttgggg atccacatgg caatcactgg gacgtttgct ttacaaaaag acaccgtttg
     1081 ggaaaaatga acggaagtga tatctaaagt aacggagccg tttgatgaag aagaagcaga
     1141 cggcgtcgtt cagtggagag tggagcaaat cgctaagcga agctctccca ccaaaacgat
     1201 tttctttgtt ttttttcctt cttcttctct taaaatttaa ttaaaataag tgaatgtaat
     1261 ttgatcaaga ttttatctta cttctgtaat taaaattaaa atattattca ttattattaa
     1321 tttaaccgaa tgttagcctt aaatgctagt gtatcgattt gtaaagttta atc
//
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