LOCUS NM_116134 1373 bp mRNA linear PLN 20-OCT-2022
DEFINITION Arabidopsis thaliana AtL5 (ATL5), mRNA.
ACCESSION NM_116134
VERSION NM_116134.5
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 1373)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 1373)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 1373)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (bases 1 to 1373)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
This record is derived from an annotated genomic sequence
(NC_003074).
On Sep 12, 2016 this sequence version replaced NM_116134.4.
FEATURES Location/Qualifiers
source 1..1373
/organism="Arabidopsis thaliana"
/mol_type="mRNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
gene 1..1373
/gene="ATL5"
/locus_tag="AT3G62690"
/gene_synonym="AtL5"
/note="Encodes a RING-H2 zinc finger protein related to
ATL2. The ATL gene family is represented by fifteen
sequences that contain, in addition to the RING, a
transmembrane domain which is located in most of them
towards the N-terminal end."
/db_xref="Araport:AT3G62690"
/db_xref="GeneID:825443"
/db_xref="TAIR:AT3G62690"
CDS 119..892
/gene="ATL5"
/locus_tag="AT3G62690"
/gene_synonym="AtL5"
/inference="Similar to RNA sequence,
EST:INSD:DR321070.1,INSD:EH913523.1,INSD:BP830833.1,
INSD:DR321072.1,INSD:EL238804.1,INSD:DR321068.1,
INSD:DR370942.1,INSD:DR321074.1,INSD:DR321073.1,
INSD:AU227070.1,INSD:BP562789.3,INSD:BP834843.1,
INSD:DR751305.1,INSD:DR321071.1,INSD:BP606250.1,
INSD:BP650733.1,INSD:DR321069.1,INSD:EL119256.1,
INSD:AI997856.1,INSD:BP576130.1,INSD:DR751306.1"
/inference="Similar to RNA sequence,
mRNA:INSD:BX823459.1,INSD:AK228355.1,INSD:AF132015.1,
INSD:BT009649.1,INSD:BX822389.1"
/note="AtL5 (ATL5); FUNCTIONS IN: zinc ion binding;
INVOLVED IN: protein complex assembly; LOCATED IN:
membrane; EXPRESSED IN: 6 plant structures; EXPRESSED
DURING: F mature embryo stage, petal differentiation and
expansion stage, E expanded cotyledon stage, D bilateral
stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type
(InterPro:IPR001841), Zinc finger, C3HC4 RING-type
(InterPro:IPR018957); BEST Arabidopsis thaliana protein
match is: RING/U-box superfamily protein
(TAIR:AT2G47560.1); Has 10661 Blast hits to 10636 proteins
in 314 species: Archae - 0; Bacteria - 0; Metazoa - 2642;
Fungi - 1094; Plants - 5229; Viruses - 125; Other
Eukaryotes - 1571 (source: NCBI BLink)."
/codon_start=1
/product="AtL5"
/protein_id="NP_191828.1"
/db_xref="GeneID:825443"
/db_xref="TAIR:AT3G62690"
/db_xref="Araport:AT3G62690"
/translation="MGNLFDSSKTLWGNMNHGSSRYSLNGKIMLASVIILFVAVILIL
CFHSYARWLFRRQNRRIRRRISAHLRSLAAARDPTQSSSSLSPLDPTVLEKIPIFVYS
VKTHESPLEECSVCLSEFEEDDEGRVLPKCGHVFHVDCIDTWFRSRSSCPLCRAPVQP
AQPVTEPEPVAAVFPSVKPIEDTEAGSSSSSDESESSTPSSSSGSPVRFPMEACEREP
IDLVGIIVEIPREFQDSNSDLPADNGSNRRASLKRLWII"
ORIGIN
1 aattatacca cattagaaac ttcccactct ctctctcgtt tgcttcttct tcatcgtttc
61 acccactcac ttcattctct ctctaaaacc ttcactttct ctatctatct tcaaaacaat
121 gggaaacctg tttgacagta gcaagacttt atggggaaac atgaaccatg gatcgtcacg
181 ttactctcta aacggcaaaa tcatgcttgc ttccgtcatc atcctcttcg tcgccgtcat
241 tttaatcctc tgtttccaca gctacgctag atggttattc cgccgtcaaa accgccgtat
301 tcgccgccgt atcagtgctc acctccgatc actcgccgcc gctagagacc ccacccaatc
361 atcatcctcc ctctctcctc ttgatccgac ggtgctcgag aagatcccta tcttcgtcta
421 ctccgttaaa acccatgaat ctccgcttga ggaatgctct gtttgcttgt cggaattcga
481 agaagacgac gaaggacgtg tccttcccaa atgcggccac gtgttccatg tcgattgtat
541 agacacgtgg ttccggtcca gatcaagttg tcctctttgt agagctccgg ttcaacccgc
601 acagccggtt accgaacccg aaccggttgc tgctgtgttt ccatcggtta aaccaattga
661 ggataccgaa gccggaagtt cctcttcatc ggacgaatcc gaatcctcga cgccgtcttc
721 ctcctctggt tcgccggtga ggtttccgat ggaagcttgt gagagagaac cgattgattt
781 agtcggtatc attgtggaga ttcccaggga atttcaagat tctaattcgg atctacccgc
841 agataacggg tcgaatcgtc gggcttcgtt gaaaaggcta tggattattt gatcacataa
901 ttggatagtg actgaatccg acccggtaaa tgggtgggca taataattcg gattctgaag
961 atccggtaat atgacgcagc gggcagaatc gtattactgg catggaagac gacacgtggc
1021 gtttttgggg atccacatgg caatcactgg gacgtttgct ttacaaaaag acaccgtttg
1081 ggaaaaatga acggaagtga tatctaaagt aacggagccg tttgatgaag aagaagcaga
1141 cggcgtcgtt cagtggagag tggagcaaat cgctaagcga agctctccca ccaaaacgat
1201 tttctttgtt ttttttcctt cttcttctct taaaatttaa ttaaaataag tgaatgtaat
1261 ttgatcaaga ttttatctta cttctgtaat taaaattaaa atattattca ttattattaa
1321 tttaaccgaa tgttagcctt aaatgctagt gtatcgattt gtaaagttta atc
//