U.S. flag

An official website of the United States government

Arabidopsis thaliana S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (AT3G56080), mRNA

NCBI Reference Sequence: NM_115466.5

FASTA Graphics 

LOCUS       NM_115466               2172 bp    mRNA    linear   PLN 20-OCT-2022
DEFINITION  Arabidopsis thaliana S-adenosyl-L-methionine-dependent
            methyltransferases superfamily protein (AT3G56080), mRNA.
ACCESSION   NM_115466
VERSION     NM_115466.5
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (bases 1 to 2172)
  AUTHORS   Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
            Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
            Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
            Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
            Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
            Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
            Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
            Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
            Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
            Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
            Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
            Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
            Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
            Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
            Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
            Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
            Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
            Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
            Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
            Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
            Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
            Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
            Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
            Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
            Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
            Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
            Yamada,M., Yasuda,M. and Tabata,S.
  CONSRTM   European Union Chromosome 3 Arabidopsis Sequencing Consortium;
            Institute for Genomic Research; Kazusa DNA Research Institute
  TITLE     Sequence and analysis of chromosome 3 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 408 (6814), 820-822 (2000)
   PUBMED   11130713
REFERENCE   2  (bases 1 to 2172)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 2172)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (bases 1 to 2172)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            This record is derived from an annotated genomic sequence
            (NC_003074).
            
            On Sep 12, 2016 this sequence version replaced NM_115466.4.
FEATURES             Location/Qualifiers
     source          1..2172
                     /organism="Arabidopsis thaliana"
                     /mol_type="mRNA"
                     /db_xref="taxon:3702"
                     /chromosome="3"
                     /ecotype="Columbia"
     gene            1..2172
                     /locus_tag="AT3G56080"
                     /db_xref="Araport:AT3G56080"
                     /db_xref="GeneID:824774"
                     /db_xref="TAIR:AT3G56080"
     CDS             123..1955
                     /locus_tag="AT3G56080"
                     /inference="Similar to RNA sequence,
                     EST:INSD:AV544398.1,INSD:DR369363.1,INSD:AV826303.1,
                     INSD:DR383270.1,INSD:AY091261.1,INSD:EL330230.1,
                     INSD:DR360451.1,INSD:AV794316.1"
                     /inference="Similar to RNA sequence,
                     mRNA:INSD:BX823802.1,INSD:AY059794.1"
                     /note="S-adenosyl-L-methionine-dependent
                     methyltransferases superfamily protein; INVOLVED IN:
                     biological_process unknown; LOCATED IN: endomembrane
                     system; EXPRESSED IN: 17 plant structures; EXPRESSED
                     DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s:
                     Protein of unknown function DUF248, methyltransferase
                     putative (InterPro:IPR004159); BEST Arabidopsis thaliana
                     protein match is: S-adenosyl-L-methionine-dependent
                     methyltransferases superfamily protein (TAIR:AT2G40280.1);
                     Has 1162 Blast hits to 1119 proteins in 165 species:
                     Archae - 0; Bacteria - 246; Metazoa - 1; Fungi - 5; Plants
                     - 904; Viruses - 0; Other Eukaryotes - 6 (source: NCBI
                     BLink)."
                     /codon_start=1
                     /product="S-adenosyl-L-methionine-dependent
                     methyltransferases superfamily protein"
                     /protein_id="NP_567033.2"
                     /db_xref="GeneID:824774"
                     /db_xref="TAIR:AT3G56080"
                     /db_xref="Araport:AT3G56080"
                     /translation="MIKNIFQSRKLSGLCVLSILLVSVTILLLTNDTIDLFPYLSLPY
                     LPRSSLSVIPTSTPISSPTNDSSPPLESPVNQTRVDDHPDDQGLELDWLKDDKQWNVS
                     LKIDWKRCESPDYIPCLDNTKAIKKLKSKRNMEHRERHCPERSPKCLVPLPQHYKVPL
                     PWPQSRDMIWYDNVPHPKLVEYKKDQNWVRKSGPFFVFPGGGTQFKDGVIHYINFIQK
                     TLPILDWGKKVRVVLDVGCGVASFGGTLLDKNVITMSFAPKDEHEAQIQFALERGIPA
                     TLAVIGTQKLPFPDNAYDVIHCARCRVHWHGYGGRPLLELNRVLRPGGFFVWSATPVY
                     QHDEGHRNVWKTMESLTTSMCWKVVARTRFTKVGFVIYQKPDSDSCYESRKNKDPPLC
                     IEEETKKNSSWYTPLLTCLPKLPVSPIGKWPSGWPERLTETPVSLFREQRSEESFRED
                     SKLWSGVMSNIYLYSLAINWTRIHNVMDMNAGYGGFAAALINKPLWVMNVIPVEGEDT
                     LSTIFDRGLIGIYHDWCESFNTYPRSYDLLHSSFLFTNLSQRCDLMEVVVEIDRILRP
                     GGYLAVQDTVEMLKKLNPILLSLRWSTNLYRGKFLVGLKSSWRP"
ORIGIN      
        1 gtcatatata ttattgccca tcttgttttc tatttttggc tctttacaca taacttcaat
       61 atctctctct caaagatcga tcagagtaat ctctctctgt tgtgtggaaa aacgaagaaa
      121 gaatgatcaa gaacatcttc caaagtcgga aactctcagg tctctgtgtt ctctcaatct
      181 tgctcgtatc agtcacaatc ctcctcttga ccaatgatac catcgatctc ttcccttact
      241 tgtctctccc ttatctccct cgatcttctc tctccgtcat ccctacctcc acgccaatct
      301 cgagtcccac caacgactca tcacctcctc tggaatcacc ggttaatcaa acccgagtcg
      361 atgatcatcc tgatgatcaa ggtttggaat tggattggct taaagatgac aaacaatgga
      421 acgtgagttt gaagatagat tggaagagat gtgagagtcc agattacata ccgtgtttgg
      481 ataacacaaa agctatcaag aaacttaagt cgaagagaaa catggagcac agagagagac
      541 attgtcctga gcgttcacca aaatgtttgg ttcctttgcc acaacattac aaagttcctc
      601 ttccttggcc tcagagtaga gacatgattt ggtatgataa tgttcctcat ccgaaacttg
      661 tagaatacaa gaaagatcag aattgggttc gtaaatctgg acctttcttt gtcttccctg
      721 gaggtggaac tcaattcaaa gacggtgtta ttcactacat caacttcata caaaagacgt
      781 tacctattct tgattggggg aagaaagtaa gagtggttct agatgttggt tgtggtgtgg
      841 ctagctttgg tgggacttta cttgataaga acgttatcac aatgtcattt gctcctaaag
      901 acgaacacga agctcagatt cagttcgcac tggaacgagg gattcccgct acactcgctg
      961 ttattggaac tcaaaagctt ccttttcctg ataatgctta cgacgtaatc cattgcgcta
     1021 gatgcagagt ccattggcat ggatacggtg gtagaccact tttggaactt aaccgggttc
     1081 taaggcctgg agggtttttt gtttggtcag ctacaccagt ttatcaacac gacgaagggc
     1141 accgtaatgt ttggaaaaca atggagtctt tgactacatc aatgtgttgg aaagttgtgg
     1201 ctagaactcg attcactaaa gttggattcg tgatttacca gaaaccagac tcagattctt
     1261 gttatgaatc tcgtaaaaac aaagatccgc ctctctgcat tgaagaagag accaagaaga
     1321 acagttcatg gtacactcct ctgcttactt gtctaccgaa actaccggtc agtccaatag
     1381 ggaaatggcc ttccggttgg cctgagaggt taacggagac accggttagc ctctttagag
     1441 agcagaggag tgaagagagt ttcagagaag acagcaaact ctggtctgga gtcatgtcta
     1501 atatctacct atatagttta gctataaact ggactaggat tcacaatgtt atggacatga
     1561 acgctggtta tggaggattt gcggctgctc ttataaacaa acctctgtgg gtgatgaatg
     1621 tgattcctgt agaaggtgaa gacacgttat cgacgatttt tgatagaggt ttgataggga
     1681 tataccatga ttggtgtgag tcgttcaata catacccaag atcatatgat ctcttgcact
     1741 ctagtttcct ttttaccaat ctttctcaaa ggtgtgattt gatggaggtg gtagtggaaa
     1801 tagaccgaat actaagacca ggagggtatc ttgcggtgca agacactgtc gaaatgctaa
     1861 agaagctaaa ccctattctt ttatcactcc gatggtcaac gaatctgtac agaggcaaat
     1921 tccttgttgg cttgaaatct tcttggcgtc cttaaacaca acattcatca ttctctttaa
     1981 caaatcttgt tcattttcgt tttgattagg gctgttcaat gatttttggt gcggatactc
     2041 ttaatttgaa gttttttttt ggtttggaaa gtatagcctt ataggaatca agttaaacgt
     2101 tagattcttg tgataatgtg tcttttaact ataaagtttg aagtataaat ataatatttt
     2161 tccttccatt tg
//
Feature
Display: FASTA GenBank Help
Details

Supplemental Content

Change region shown

Customize view

Reference sequence information

  • RefSeq alternative splicing
    See the other reference mRNA sequence splice variant for the AT3G56080 gene (NM_001339764.1).
  • RefSeq protein product
    See the reference protein sequence for S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (NP_567033.2).

More about the AT3G56080 gene

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
External link. Please review our privacy policy.