LOCUS NM_115466 2172 bp mRNA linear PLN 20-OCT-2022
DEFINITION Arabidopsis thaliana S-adenosyl-L-methionine-dependent
methyltransferases superfamily protein (AT3G56080), mRNA.
ACCESSION NM_115466
VERSION NM_115466.5
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 2172)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 2172)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 2172)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (bases 1 to 2172)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
This record is derived from an annotated genomic sequence
(NC_003074).
On Sep 12, 2016 this sequence version replaced NM_115466.4.
FEATURES Location/Qualifiers
source 1..2172
/organism="Arabidopsis thaliana"
/mol_type="mRNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
gene 1..2172
/locus_tag="AT3G56080"
/db_xref="Araport:AT3G56080"
/db_xref="GeneID:824774"
/db_xref="TAIR:AT3G56080"
CDS 123..1955
/locus_tag="AT3G56080"
/inference="Similar to RNA sequence,
EST:INSD:AV544398.1,INSD:DR369363.1,INSD:AV826303.1,
INSD:DR383270.1,INSD:AY091261.1,INSD:EL330230.1,
INSD:DR360451.1,INSD:AV794316.1"
/inference="Similar to RNA sequence,
mRNA:INSD:BX823802.1,INSD:AY059794.1"
/note="S-adenosyl-L-methionine-dependent
methyltransferases superfamily protein; INVOLVED IN:
biological_process unknown; LOCATED IN: endomembrane
system; EXPRESSED IN: 17 plant structures; EXPRESSED
DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s:
Protein of unknown function DUF248, methyltransferase
putative (InterPro:IPR004159); BEST Arabidopsis thaliana
protein match is: S-adenosyl-L-methionine-dependent
methyltransferases superfamily protein (TAIR:AT2G40280.1);
Has 1162 Blast hits to 1119 proteins in 165 species:
Archae - 0; Bacteria - 246; Metazoa - 1; Fungi - 5; Plants
- 904; Viruses - 0; Other Eukaryotes - 6 (source: NCBI
BLink)."
/codon_start=1
/product="S-adenosyl-L-methionine-dependent
methyltransferases superfamily protein"
/protein_id="NP_567033.2"
/db_xref="GeneID:824774"
/db_xref="TAIR:AT3G56080"
/db_xref="Araport:AT3G56080"
/translation="MIKNIFQSRKLSGLCVLSILLVSVTILLLTNDTIDLFPYLSLPY
LPRSSLSVIPTSTPISSPTNDSSPPLESPVNQTRVDDHPDDQGLELDWLKDDKQWNVS
LKIDWKRCESPDYIPCLDNTKAIKKLKSKRNMEHRERHCPERSPKCLVPLPQHYKVPL
PWPQSRDMIWYDNVPHPKLVEYKKDQNWVRKSGPFFVFPGGGTQFKDGVIHYINFIQK
TLPILDWGKKVRVVLDVGCGVASFGGTLLDKNVITMSFAPKDEHEAQIQFALERGIPA
TLAVIGTQKLPFPDNAYDVIHCARCRVHWHGYGGRPLLELNRVLRPGGFFVWSATPVY
QHDEGHRNVWKTMESLTTSMCWKVVARTRFTKVGFVIYQKPDSDSCYESRKNKDPPLC
IEEETKKNSSWYTPLLTCLPKLPVSPIGKWPSGWPERLTETPVSLFREQRSEESFRED
SKLWSGVMSNIYLYSLAINWTRIHNVMDMNAGYGGFAAALINKPLWVMNVIPVEGEDT
LSTIFDRGLIGIYHDWCESFNTYPRSYDLLHSSFLFTNLSQRCDLMEVVVEIDRILRP
GGYLAVQDTVEMLKKLNPILLSLRWSTNLYRGKFLVGLKSSWRP"
ORIGIN
1 gtcatatata ttattgccca tcttgttttc tatttttggc tctttacaca taacttcaat
61 atctctctct caaagatcga tcagagtaat ctctctctgt tgtgtggaaa aacgaagaaa
121 gaatgatcaa gaacatcttc caaagtcgga aactctcagg tctctgtgtt ctctcaatct
181 tgctcgtatc agtcacaatc ctcctcttga ccaatgatac catcgatctc ttcccttact
241 tgtctctccc ttatctccct cgatcttctc tctccgtcat ccctacctcc acgccaatct
301 cgagtcccac caacgactca tcacctcctc tggaatcacc ggttaatcaa acccgagtcg
361 atgatcatcc tgatgatcaa ggtttggaat tggattggct taaagatgac aaacaatgga
421 acgtgagttt gaagatagat tggaagagat gtgagagtcc agattacata ccgtgtttgg
481 ataacacaaa agctatcaag aaacttaagt cgaagagaaa catggagcac agagagagac
541 attgtcctga gcgttcacca aaatgtttgg ttcctttgcc acaacattac aaagttcctc
601 ttccttggcc tcagagtaga gacatgattt ggtatgataa tgttcctcat ccgaaacttg
661 tagaatacaa gaaagatcag aattgggttc gtaaatctgg acctttcttt gtcttccctg
721 gaggtggaac tcaattcaaa gacggtgtta ttcactacat caacttcata caaaagacgt
781 tacctattct tgattggggg aagaaagtaa gagtggttct agatgttggt tgtggtgtgg
841 ctagctttgg tgggacttta cttgataaga acgttatcac aatgtcattt gctcctaaag
901 acgaacacga agctcagatt cagttcgcac tggaacgagg gattcccgct acactcgctg
961 ttattggaac tcaaaagctt ccttttcctg ataatgctta cgacgtaatc cattgcgcta
1021 gatgcagagt ccattggcat ggatacggtg gtagaccact tttggaactt aaccgggttc
1081 taaggcctgg agggtttttt gtttggtcag ctacaccagt ttatcaacac gacgaagggc
1141 accgtaatgt ttggaaaaca atggagtctt tgactacatc aatgtgttgg aaagttgtgg
1201 ctagaactcg attcactaaa gttggattcg tgatttacca gaaaccagac tcagattctt
1261 gttatgaatc tcgtaaaaac aaagatccgc ctctctgcat tgaagaagag accaagaaga
1321 acagttcatg gtacactcct ctgcttactt gtctaccgaa actaccggtc agtccaatag
1381 ggaaatggcc ttccggttgg cctgagaggt taacggagac accggttagc ctctttagag
1441 agcagaggag tgaagagagt ttcagagaag acagcaaact ctggtctgga gtcatgtcta
1501 atatctacct atatagttta gctataaact ggactaggat tcacaatgtt atggacatga
1561 acgctggtta tggaggattt gcggctgctc ttataaacaa acctctgtgg gtgatgaatg
1621 tgattcctgt agaaggtgaa gacacgttat cgacgatttt tgatagaggt ttgataggga
1681 tataccatga ttggtgtgag tcgttcaata catacccaag atcatatgat ctcttgcact
1741 ctagtttcct ttttaccaat ctttctcaaa ggtgtgattt gatggaggtg gtagtggaaa
1801 tagaccgaat actaagacca ggagggtatc ttgcggtgca agacactgtc gaaatgctaa
1861 agaagctaaa ccctattctt ttatcactcc gatggtcaac gaatctgtac agaggcaaat
1921 tccttgttgg cttgaaatct tcttggcgtc cttaaacaca acattcatca ttctctttaa
1981 caaatcttgt tcattttcgt tttgattagg gctgttcaat gatttttggt gcggatactc
2041 ttaatttgaa gttttttttt ggtttggaaa gtatagcctt ataggaatca agttaaacgt
2101 tagattcttg tgataatgtg tcttttaact ataaagtttg aagtataaat ataatatttt
2161 tccttccatt tg
//