LOCUS NM_001339749 2867 bp mRNA linear PLN 20-OCT-2022
DEFINITION Arabidopsis thaliana Amidohydrolase family (LAF3), mRNA.
ACCESSION NM_001339749
VERSION NM_001339749.1
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 2867)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 2867)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 2867)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (bases 1 to 2867)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
This record is derived from an annotated genomic sequence
(NC_003074).
FEATURES Location/Qualifiers
source 1..2867
/organism="Arabidopsis thaliana"
/mol_type="mRNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
gene 1..2867
/gene="LAF3"
/locus_tag="AT3G55850"
/gene_synonym="LAF3 ISF1; LAF3 ISF2; LAF3 ISOFORM 2; LONG
AFTER FAR-RED 3; LONG AFTER FAR-RED 3 ISOFORM 1"
/note="Encodes a product that might regulate
nucleo-cytoplasmic trafficking of an intermediate(s)
involved in phyA signal transduction. Differs from isoform
2 only in the first few N-terminal amino acids."
/db_xref="Araport:AT3G55850"
/db_xref="GeneID:824751"
/db_xref="TAIR:AT3G55850"
CDS 1191..2603
/gene="LAF3"
/locus_tag="AT3G55850"
/gene_synonym="LAF3 ISF1; LAF3 ISF2; LAF3 ISOFORM 2; LONG
AFTER FAR-RED 3; LONG AFTER FAR-RED 3 ISOFORM 1"
/codon_start=1
/product="Amidohydrolase family"
/protein_id="NP_001326016.1"
/db_xref="GeneID:824751"
/db_xref="Araport:AT3G55850"
/db_xref="TAIR:AT3G55850"
/translation="MCNKKKLDAKEGSWILGGGWNNDFWGGELPSASWIDEISPRNPV
WLIRMDGHMALANSLALKIAGVISLTEDPVGGTIMRMPSGEPTGLLIDAAMELVTPWV
KEISVDERREALFRASKYALTRGVTTVIDLGRYFPGTTDELSWKDFQDVYLYADSSKK
MMIRTCLFFPITTWSRLLDLKLQKGSVLSEWLYLGGVKAFIDGSLGSNSALFYEEYID
TPNNYGLEVMDPEKLSNFTMAADKSGLQVAIHAIGDKANDMILDMYESVAAANGDRDR
RFRIEHAQHLAPGSANRFGQLHIVASVQPDHLLDDADSVAKKLGSERAVKESYLFQSL
LNGNALLALGSDWPVCFRKSLHIYNVFTYSQTLLRLFSLQVADINPLHSIRTAVKRIP
PKWDHAWIPSERISFTDALIAQTISAARAAFLDHHLGSLSPGKLADFVILSTNSWDEF
SKDVSASVLATYVGGKQLYP"
ORIGIN
1 tgtggtgagc acaaagcgaa ctattctttc gccttttact aaagaatacc gtgtgctctc
61 cacgctaagt ggcatacgcc tatttttgga gggatctcac ttcacagtgg gacccaacat
121 ttacactagt ctgaaatctt aatgactcaa aactccgttt gttagttatt gggccttaag
181 tttaatgagc taacgggctt taggctaatt taacggaatt gaatttaacc tgtaagttgg
241 atttgttatt tgagagaaag ttcagcattg tatcaacttc cggttatgac cggttggtat
301 gagtttccgg ttatgatcgg ttttgtttca ggtgggacga aatccacttc gtcatactgt
361 agttgttgtt gtttctgttt taagaatttc tccggcgact gactatgaac ctcttcgtca
421 tcgtttcagc tgccgtgttc ctccttatct ccgtcgcgta tcttcctttg ctcaacgact
481 tatattggtc aactctcaag tctcttacac caccggctgg tatcgtggcg gatttgttag
541 tgaccaatgg aacaatcttc accagcgata gctctttgcc ttttgccgat tccatggcga
601 ttcgtaatgg caggattctt aaagttggaa gctttgccac tctcaagggt tttataggag
661 atggaactat ggaggtgaat ctggagggga agattgtagt gcctggactt attgattcac
721 atgttcatct gatttctggg ggattacagg tgataatggc atagtgcaaa cttatttctg
781 tgttctttct tcttgcaatg atatgtaatt atgtatattg ttaagttaac ctgagattag
841 atgattacat gccattgttt gatcaggttt agatatgaag aagtatacta tactctcgtt
901 taccttatat cttttccttt tgcttttaat gtcttatcgc ttgagcatag atggcccaag
961 ttggacttcg tggagtgagt caaaaagatg agttttgtaa aatggtgaag gacgctgtgc
1021 agagtaatta atatttcatt attatatgaa caatcatatt gtggttacac ttctttattg
1081 gtgtctgttt ttagttatga tttacagtgt acagtgtaca ttgaacattt tttgcttacg
1141 ttggggttct tagtagtggg agagtattta aattactatg ctgcttttat atgtgtaaca
1201 aaaaaaaatt agatgcaaaa gaaggctcat ggattttggg tggtggctgg aacaatgatt
1261 tctggggagg agaattgccc tctgcatcat ggattgatga aatctcccct cgtaatcctg
1321 tttggttgat taggatggat ggtcatatgg cattggcaaa ttcccttgcg ctcaagattg
1381 ctggtgttat aagtttaacg gaagatccag ttggtggaac gataatgagg atgcctagtg
1441 gcgagccgac aggacttttg atcgatgctg ctatggagct tgtcaccccc tgggttaaag
1501 aaatctcagt ggatgaacgt agggaagcac tatttagagc tagcaaatat gctttgacta
1561 gaggcgtgac aactgttatt gatcttggaa gatactttcc tggcaccaca gatgagctct
1621 cctggaaaga ctttcaagat gtctatctat atgctgattc ctcgaagaag atgatgatac
1681 ggacttgctt gttttttccc atcacaacgt ggtcacgttt attggatctt aagctgcaga
1741 agggatctgt actgagtgaa tggttatatc tcggtggcgt caaagcattt attgatggct
1801 ctctaggttc caacagtgca cttttttacg aggaatatat tgatacacct aataattatg
1861 ggttagaagt gatggatcct gaaaaacttt ccaacttcac aatggcagca gacaaatcag
1921 ggcttcaggt tgctatccat gctataggcg acaaagcaaa tgacatgatc cttgacatgt
1981 acgaatccgt tgctgcagcc aatggagacc gagatagaag atttaggata gagcatgccc
2041 aacatttggc accaggatca gccaaccggt tcggtcaact tcacattgtt gcttcagttc
2101 agccagacca tttgcttgat gatgctgatt ctgttgctaa gaagctcggt tctgaaagag
2161 ccgtaaagga gtcttatcta ttccaatctc tcttaaatgg caatgcactc ttggcacttg
2221 gctcagactg gcctgtatgt tttcgaaaat ctctacacat atacaatgtt tttacatata
2281 gtcaaacttt gcttcgtttg ttttccctcc aggtagcaga cattaacccg ttgcacagta
2341 tcagaaccgc ggttaaaaga atacctccca agtgggatca cgcttggatt ccatctgaac
2401 gcatctcttt tacggatgcg ctgattgcgc agacgatatc agcggcaaga gcagcgtttt
2461 tggatcatca cttggggtct ttatctccag gaaaactagc agattttgtc atattgtcaa
2521 caaattcttg ggatgagttc tcaaaagacg tttctgcatc agtgttagca acgtatgtag
2581 gaggaaagca attgtatcca tgaatcatga tgatgcagtc tttatctaat taagaaacaa
2641 actttacaca cttagagtat ctgatcattt atctgtttgt ctaggcgtta tcaatgtaca
2701 tatgtatgac atctggctta tcaattagat atgcatttca tattcaagga aaatgtttgg
2761 tgtgtcggcc aaaggaaata ggaaaaggtg gttgttggta tttgtattta ttgggatgca
2821 aaaaggtaat gttggtgagt ggcccaagca cgagccaatg tcatgaa
//