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Arabidopsis thaliana ADP-ribosylation factor B1C (ARFB1C), mRNA

NCBI Reference Sequence: NM_111182.3

FASTA Graphics 

LOCUS       NM_111182               1316 bp    mRNA    linear   PLN 20-OCT-2022
DEFINITION  Arabidopsis thaliana ADP-ribosylation factor B1C (ARFB1C), mRNA.
ACCESSION   NM_111182
VERSION     NM_111182.3
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (bases 1 to 1316)
  AUTHORS   Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
            Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
            Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
            Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
            Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
            Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
            Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
            Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
            Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
            Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
            Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
            Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
            Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
            Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
            Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
            Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
            Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
            Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
            Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
            Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
            Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
            Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
            Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
            Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
            Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
            Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
            Yamada,M., Yasuda,M. and Tabata,S.
  CONSRTM   European Union Chromosome 3 Arabidopsis Sequencing Consortium;
            Institute for Genomic Research; Kazusa DNA Research Institute
  TITLE     Sequence and analysis of chromosome 3 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 408 (6814), 820-822 (2000)
   PUBMED   11130713
REFERENCE   2  (bases 1 to 1316)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 1316)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (bases 1 to 1316)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            This record is derived from an annotated genomic sequence
            (NC_003074).
            
            On Sep 12, 2016 this sequence version replaced NM_111182.2.
FEATURES             Location/Qualifiers
     source          1..1316
                     /organism="Arabidopsis thaliana"
                     /mol_type="mRNA"
                     /db_xref="taxon:3702"
                     /chromosome="3"
                     /ecotype="Columbia"
     gene            1..1316
                     /gene="ARFB1C"
                     /locus_tag="AT3G03120"
                     /gene_synonym="ADP-ribosylation factor B1C; ATARFB1C;
                     T17B22.19; T17B22_19"
                     /note="A member of ARF GTPase family. A thaliana has 21
                     members of this family, known to be essential for vesicle
                     coating and uncoating and functions in GTP-binding. Gene
                     encoding ADP-ribosylation factor and similar to
                     ADP-ribosylation factor 1; ARF 1 (GP:385340) {Drosophila
                     melanogaster}, other ARFs and ARF-like proteins."
                     /db_xref="Araport:AT3G03120"
                     /db_xref="GeneID:821079"
                     /db_xref="TAIR:AT3G03120"
     CDS             203..781
                     /gene="ARFB1C"
                     /locus_tag="AT3G03120"
                     /gene_synonym="ADP-ribosylation factor B1C; ATARFB1C;
                     T17B22.19; T17B22_19"
                     /inference="Similar to RNA sequence,
                     EST:INSD:DR380501.1,INSD:BP625133.1,INSD:DR278195.1,
                     INSD:ES025875.1,INSD:ES148469.1,INSD:ES035887.1,
                     INSD:ES110546.1,INSD:EL308675.1,INSD:EL968984.1,
                     INSD:EL991113.1,INSD:EH823948.1,INSD:BP796103.1,
                     INSD:EL074429.1,INSD:AU228039.1,INSD:ES184793.1,
                     INSD:BP859057.1,INSD:ES173415.1,INSD:ES191225.1"
                     /inference="Similar to RNA sequence,
                     mRNA:INSD:AY085011.1,INSD:BT004032.1,INSD:BT005084.1"
                     /note="ADP-ribosylation factor B1C (ARFB1C); FUNCTIONS IN:
                     GTP binding; INVOLVED IN: N-terminal protein
                     myristoylation; LOCATED IN: intracellular; EXPRESSED IN:
                     23 plant structures; EXPRESSED DURING: 13 growth stages;
                     CONTAINS InterPro DOMAIN/s: ADP-ribosylation factor
                     (InterPro:IPR006688), Small GTP-binding protein
                     (InterPro:IPR005225), ARF/SAR superfamily
                     (InterPro:IPR006689); BEST Arabidopsis thaliana protein
                     match is: ADP-ribosylation factor B1B (TAIR:AT5G17060.1);
                     Has 12521 Blast hits to 12513 proteins in 459 species:
                     Archae - 8; Bacteria - 10; Metazoa - 6191; Fungi - 1629;
                     Plants - 2029; Viruses - 3; Other Eukaryotes - 2651
                     (source: NCBI BLink)."
                     /codon_start=1
                     /product="ADP-ribosylation factor B1C"
                     /protein_id="NP_186962.1"
                     /db_xref="GeneID:821079"
                     /db_xref="TAIR:AT3G03120"
                     /db_xref="Araport:AT3G03120"
                     /translation="MGQTFRKLFDTFFGNQEMRVVMLGLDAAGKTTILYKLHIGEVLS
                     TVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGK
                     AKQEFQDIIRDPFMLNSVILVFANKQDMRGAMSPREVCEGLGLLDLKNRKWHIQGTCA
                     LQGDGLYEGLDWLSATLKEVKAAGYSSVGPSF"
ORIGIN      
        1 atactgtaca taaggaatcc attgtaccga aaacgcaacc tttgctttct tgggaaactc
       61 tctgcaattc ctggagaaat cgaccatcat catcttagct ttgattctct ctgtgtttct
      121 tcactttcaa tttctgtttt ggtttatcga taagagaaag taaaattcgt ctgtgggggt
      181 ttaagctttt ttggggtgag agatgggtca aacttttcgc aagcttttcg ataccttctt
      241 cggcaaccag gagatgaggg tcgttatgct gggtctggat gcggctggca aaacaacgat
      301 actatacaag ctccacatag gagaagttct gtctactgtt cccacaatcg gtttcaatgt
      361 tgagaaagtt cagtacaaga atgtcatctt cacagtttgg gatgttggtg gccaagagaa
      421 gctgaggccc ttgtggaggc attacttcaa taataccgat ggacttatat acgtggtaga
      481 ctccttggac cgagagagga ttggtaaagc gaagcaagaa tttcaggata tcataaggga
      541 cccattcatg ctcaacagtg tcattctagt gtttgcaaac aaacaagaca tgagaggagc
      601 catgtctcct cgagaagtat gtgaagggct tggcttactt gatctcaaga acaggaaatg
      661 gcatatacaa ggcacatgtg ctcttcaagg agatgggctc tatgaaggct tagactggtt
      721 atccgctaca ctcaaagagg ttaaagccgc tggttactca tcagttggtc cctcgtttta
      781 gcacccctac catttgcaaa gaaaaaaatc cctgactagc taaattgaca tacgaaagta
      841 ccaaatcaag ctcatggtgt ctcctgtcta ctcaccatta tatactttac atccatggcc
      901 acacccttct tcgtggccac tgatatggta atatcacaaa actaatgaaa atctctcaag
      961 acttttgtaa tggaagtgtt tttgtttttc tttcgtcttc acatggctct gcttcttaaa
     1021 gctaatgtta gtatcaatta ggctcctttt tgcataatat gactttggag ctttattgta
     1081 aattctgatg gatacaaaat gtataaatct gacaaaaatt gcaaaattct catgagatta
     1141 ttaaagtctc ccttatagct atgatagatg attgatcttt ttacgtccct gtcttcccct
     1201 gttgagctcg ggcactataa atttggtaac taccgagttt gtctcttttg agttcatata
     1261 aaatacagct aaatcgagtt tttttttaaa gccatgaaga aattacgaat gagatg
//
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