LOCUS NM_111182 1316 bp mRNA linear PLN 20-OCT-2022
DEFINITION Arabidopsis thaliana ADP-ribosylation factor B1C (ARFB1C), mRNA.
ACCESSION NM_111182
VERSION NM_111182.3
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 1316)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 1316)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 1316)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (bases 1 to 1316)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
This record is derived from an annotated genomic sequence
(NC_003074).
On Sep 12, 2016 this sequence version replaced NM_111182.2.
FEATURES Location/Qualifiers
source 1..1316
/organism="Arabidopsis thaliana"
/mol_type="mRNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
gene 1..1316
/gene="ARFB1C"
/locus_tag="AT3G03120"
/gene_synonym="ADP-ribosylation factor B1C; ATARFB1C;
T17B22.19; T17B22_19"
/note="A member of ARF GTPase family. A thaliana has 21
members of this family, known to be essential for vesicle
coating and uncoating and functions in GTP-binding. Gene
encoding ADP-ribosylation factor and similar to
ADP-ribosylation factor 1; ARF 1 (GP:385340) {Drosophila
melanogaster}, other ARFs and ARF-like proteins."
/db_xref="Araport:AT3G03120"
/db_xref="GeneID:821079"
/db_xref="TAIR:AT3G03120"
CDS 203..781
/gene="ARFB1C"
/locus_tag="AT3G03120"
/gene_synonym="ADP-ribosylation factor B1C; ATARFB1C;
T17B22.19; T17B22_19"
/inference="Similar to RNA sequence,
EST:INSD:DR380501.1,INSD:BP625133.1,INSD:DR278195.1,
INSD:ES025875.1,INSD:ES148469.1,INSD:ES035887.1,
INSD:ES110546.1,INSD:EL308675.1,INSD:EL968984.1,
INSD:EL991113.1,INSD:EH823948.1,INSD:BP796103.1,
INSD:EL074429.1,INSD:AU228039.1,INSD:ES184793.1,
INSD:BP859057.1,INSD:ES173415.1,INSD:ES191225.1"
/inference="Similar to RNA sequence,
mRNA:INSD:AY085011.1,INSD:BT004032.1,INSD:BT005084.1"
/note="ADP-ribosylation factor B1C (ARFB1C); FUNCTIONS IN:
GTP binding; INVOLVED IN: N-terminal protein
myristoylation; LOCATED IN: intracellular; EXPRESSED IN:
23 plant structures; EXPRESSED DURING: 13 growth stages;
CONTAINS InterPro DOMAIN/s: ADP-ribosylation factor
(InterPro:IPR006688), Small GTP-binding protein
(InterPro:IPR005225), ARF/SAR superfamily
(InterPro:IPR006689); BEST Arabidopsis thaliana protein
match is: ADP-ribosylation factor B1B (TAIR:AT5G17060.1);
Has 12521 Blast hits to 12513 proteins in 459 species:
Archae - 8; Bacteria - 10; Metazoa - 6191; Fungi - 1629;
Plants - 2029; Viruses - 3; Other Eukaryotes - 2651
(source: NCBI BLink)."
/codon_start=1
/product="ADP-ribosylation factor B1C"
/protein_id="NP_186962.1"
/db_xref="GeneID:821079"
/db_xref="TAIR:AT3G03120"
/db_xref="Araport:AT3G03120"
/translation="MGQTFRKLFDTFFGNQEMRVVMLGLDAAGKTTILYKLHIGEVLS
TVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGK
AKQEFQDIIRDPFMLNSVILVFANKQDMRGAMSPREVCEGLGLLDLKNRKWHIQGTCA
LQGDGLYEGLDWLSATLKEVKAAGYSSVGPSF"
ORIGIN
1 atactgtaca taaggaatcc attgtaccga aaacgcaacc tttgctttct tgggaaactc
61 tctgcaattc ctggagaaat cgaccatcat catcttagct ttgattctct ctgtgtttct
121 tcactttcaa tttctgtttt ggtttatcga taagagaaag taaaattcgt ctgtgggggt
181 ttaagctttt ttggggtgag agatgggtca aacttttcgc aagcttttcg ataccttctt
241 cggcaaccag gagatgaggg tcgttatgct gggtctggat gcggctggca aaacaacgat
301 actatacaag ctccacatag gagaagttct gtctactgtt cccacaatcg gtttcaatgt
361 tgagaaagtt cagtacaaga atgtcatctt cacagtttgg gatgttggtg gccaagagaa
421 gctgaggccc ttgtggaggc attacttcaa taataccgat ggacttatat acgtggtaga
481 ctccttggac cgagagagga ttggtaaagc gaagcaagaa tttcaggata tcataaggga
541 cccattcatg ctcaacagtg tcattctagt gtttgcaaac aaacaagaca tgagaggagc
601 catgtctcct cgagaagtat gtgaagggct tggcttactt gatctcaaga acaggaaatg
661 gcatatacaa ggcacatgtg ctcttcaagg agatgggctc tatgaaggct tagactggtt
721 atccgctaca ctcaaagagg ttaaagccgc tggttactca tcagttggtc cctcgtttta
781 gcacccctac catttgcaaa gaaaaaaatc cctgactagc taaattgaca tacgaaagta
841 ccaaatcaag ctcatggtgt ctcctgtcta ctcaccatta tatactttac atccatggcc
901 acacccttct tcgtggccac tgatatggta atatcacaaa actaatgaaa atctctcaag
961 acttttgtaa tggaagtgtt tttgtttttc tttcgtcttc acatggctct gcttcttaaa
1021 gctaatgtta gtatcaatta ggctcctttt tgcataatat gactttggag ctttattgta
1081 aattctgatg gatacaaaat gtataaatct gacaaaaatt gcaaaattct catgagatta
1141 ttaaagtctc ccttatagct atgatagatg attgatcttt ttacgtccct gtcttcccct
1201 gttgagctcg ggcactataa atttggtaac taccgagttt gtctcttttg agttcatata
1261 aaatacagct aaatcgagtt tttttttaaa gccatgaaga aattacgaat gagatg
//