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Arabidopsis thaliana acyl-CoA oxidase 5 (ACX5), mRNA

NCBI Reference Sequence: NM_129124.4

FASTA Graphics 

LOCUS       NM_129124               2412 bp    mRNA    linear   PLN 20-OCT-2022
DEFINITION  Arabidopsis thaliana acyl-CoA oxidase 5 (ACX5), mRNA.
ACCESSION   NM_129124
VERSION     NM_129124.4
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (bases 1 to 2412)
  AUTHORS   Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
            Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
            Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
            Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
            Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
            Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
            Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
            Venter,J.C.
  TITLE     Sequence and analysis of chromosome 2 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 402 (6763), 761-768 (1999)
   PUBMED   10617197
REFERENCE   2  (bases 1 to 2412)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 2412)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (bases 1 to 2412)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            This record is derived from an annotated genomic sequence
            (NC_003071).
            
            On Sep 12, 2016 this sequence version replaced NM_129124.3.
FEATURES             Location/Qualifiers
     source          1..2412
                     /organism="Arabidopsis thaliana"
                     /mol_type="mRNA"
                     /db_xref="taxon:3702"
                     /chromosome="2"
                     /ecotype="Columbia"
     gene            1..2412
                     /gene="ACX5"
                     /locus_tag="AT2G35690"
                     /gene_synonym="acyl-CoA oxidase 5; T20F21.12; T20F21_12"
                     /note="Encodes an acyl-CoA oxidase. Involved in jasmonate
                     biosynthesis. Expressed uniformly in seedlings and
                     throughout development."
                     /db_xref="Araport:AT2G35690"
                     /db_xref="GeneID:818138"
                     /db_xref="TAIR:AT2G35690"
     CDS             237..2231
                     /gene="ACX5"
                     /locus_tag="AT2G35690"
                     /gene_synonym="acyl-CoA oxidase 5; T20F21.12; T20F21_12"
                     /inference="Similar to RNA sequence,
                     EST:INSD:BP600970.1,INSD:AV786007.1,INSD:BE525019.1,
                     INSD:EG485737.1,INSD:BP591214.1,INSD:EL123904.1,
                     INSD:EH822431.1,INSD:CB185637.1,INSD:EG485733.1,
                     INSD:ES001111.1,INSD:ES011374.1,INSD:EG485735.1,
                     INSD:EL225117.1,INSD:EL323532.1,INSD:EL208544.1,
                     INSD:BE529030.1"
                     /inference="similar to RNA sequence,
                     mRNA:INSD:AY096691.1,INSD:AY074357.1"
                     /note="acyl-CoA oxidase 5 (ACX5); FUNCTIONS IN: acyl-CoA
                     dehydrogenase activity, oxidoreductase activity, acting on
                     the CH-CH group of donors, oxidoreductase activity, FAD
                     binding, acyl-CoA oxidase activity; INVOLVED IN: fatty
                     acid beta-oxidation, defense response to insect, jasmonic
                     acid biosynthetic process, pollen development; LOCATED IN:
                     peroxisome; EXPRESSED IN: 21 plant structures; EXPRESSED
                     DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
                     Acyl-CoA oxidase/dehydrogenase, type1/2, C-terminal
                     (InterPro:IPR013764), Acyl-CoA dehydrogenase/oxidase
                     (InterPro:IPR009100), Acyl-CoA oxidase
                     (InterPro:IPR012258), Acyl-CoA dehydrogenase/oxidase,
                     N-terminal (InterPro:IPR013786), Acyl-CoA
                     oxidase/dehydrogenase, central domain
                     (InterPro:IPR006091), Acyl-CoA oxidase, C-terminal
                     (InterPro:IPR002655), Acyl-CoA dehydrogenase/oxidase
                     C-terminal (InterPro:IPR009075); BEST Arabidopsis thaliana
                     protein match is: acyl-CoA oxidase 1 (TAIR:AT4G16760.1);
                     Has 8911 Blast hits to 8892 proteins in 1205 species:
                     Archae - 106; Bacteria - 5834; Metazoa - 1285; Fungi -
                     415; Plants - 261; Viruses - 0; Other Eukaryotes - 1010
                     (source: NCBI BLink)."
                     /codon_start=1
                     /product="acyl-CoA oxidase 5"
                     /protein_id="NP_181112.1"
                     /db_xref="Araport:AT2G35690"
                     /db_xref="GeneID:818138"
                     /db_xref="TAIR:AT2G35690"
                     /translation="MERVDHLADERNKAEFNVDDMKIVWAGSRHAFDVSNRMSRLVAN
                     DPVFEKSKRAVMSRKELFKNTLRKSVHAWKLINELRLSDEEGLKLRSFMDQPGFLDLH
                     WGMFVPAIKGQGTEQQQQKWLSLATKMQIIGCYAQTELGHGSNVQGLETTATFDPKTD
                     QFIIHSPTQTSSKWWPGGLGKVSTHAVIYARLITNGKDHGVHGFIVQLRSLDDHSPLP
                     GITVGDIGMKFGNGAYNSMDNGFLMFDHFRIPRDQMLMRLSKVTREGKYVASDVPRQL
                     VYGTMVYVRQSIVSNASTALARAVCIATRYSAVRRQFGSHDGGIETQVINYKTQQNRL
                     FPLLASAYAFRFVGEWLKWLYTDVTKRLEASDFATLPEAHACTAGLKSMTTSATSDGI
                     EECRKLCGGHGYLWCSGLPELFAVYVPACTYEGDNVVLQLQVARFLMKTVSQLGSGKA
                     PSGTTAYMGRAKHLLQCSSGVRNARDWLNPGMVLEAFEARALRMAVTCANNLSKFENQ
                     EQGFSELLADLVEAATAHCQLIVVSKFIAKVEGDIEGKGVKKQLKNLCYIYALYLLHK
                     HLGDFLSTNSVTPEQASLANQQLRSLYSQVRPNAVALVDAFDYTDQYLGSVLGRYDGN
                     VYPKLFEEALKDPLNDSVVPDGYREYIRPLIKQRFRSAKL"
ORIGIN      
        1 aaatgataaa tacttggaac tttctattac caattttttt gttaccttta ttacattagt
       61 ctctctttct gttcaaactt gtaatcctaa aaatagaaca aaatcctctg ttttttctgt
      121 aacgaattct ttcttattga atcacccaaa ggtaagagct tttttagtgg cttctctttc
      181 tttgatttat ccaatttttc acacacactc gagaatctga gacaatagag agaacaatgg
      241 agagagttga tcaccttgcc gatgagagga acaaagcaga gttcaacgtc gacgatatga
      301 agatcgtctg ggccggttcc cgccacgctt tcgatgtttc aaatcgtatg tctcgcctcg
      361 tcgctaatga tccggtcttt gagaaaagca aaagagctgt gatgagtagg aaagagttgt
      421 tcaagaacac gttgaggaaa agtgttcacg cttggaagtt gattaacgag cttcgtctct
      481 cagatgagga aggactcaaa ttgagatctt tcatggatca accaggcttc ttggatctgc
      541 attggggaat gtttgtgcct gcaattaaag gacaaggcac agagcaacaa caacaaaagt
      601 ggttgtcttt agctactaag atgcagataa ttggatgtta tgctcaaact gagcttggtc
      661 atggctctaa tgttcaaggc cttgagacaa ccgctacttt tgatccaaag acagatcagt
      721 ttatcattca cagtccaact cagacatcat ccaaatggtg gcctggtggg ttaggaaaag
      781 tttctactca tgctgttatt tatgctcgtc taataaccaa tggcaaagac catggtgtac
      841 atggattcat cgtgcagctg cgtagtttgg atgatcattc tcctcttccg ggtataaccg
      901 ttggtgatat cggaatgaag tttggaaacg gggcatataa ctcaatggac aatggttttc
      961 ttatgtttga tcattttcgc attcctagag atcaaatgct catgagactg tcaaaagtta
     1021 caagagaagg aaaatatgta gcatcagatg ttccaaggca attggtgtat ggtactatgg
     1081 tgtatgtgag acagtctatt gtgtcaaatg cttccaccgc gctggctcgg gcagtttgca
     1141 ttgctactag gtacagtgct gttcgaaggc agtttggctc acatgatggt ggcattgaga
     1201 cacaggtgat taattataaa actcagcaga acaggttgtt tcctctgctg gcatctgcat
     1261 atgcatttcg gtttgtaggg gaatggctga agtggctcta cactgatgta acaaaaagac
     1321 tagaggccag tgatttcgca acattgcctg aagctcatgc atgcactgct ggattgaagt
     1381 ctatgactac ctcagccacc tctgatggga ttgaagaatg tcgtaagtta tgtggtggac
     1441 atggatactt gtggtgtagt gggcttcctg aattgtttgc tgtatatgtt cctgcttgca
     1501 catacgaggg agacaatgtt gtgttgcagt tacaggttgc tagatttctg atgaagacag
     1561 tttcacagtt gggttctgga aaggctcctt ctgggacaac tgcttatatg ggcagagcaa
     1621 aacacctttt gcaatgcagt tccggagttc gaaatgctag ggactggtta aaccctggta
     1681 tggtgttgga agcttttgaa gcaagagctt tgagaatggc tgttacttgt gctaacaatc
     1741 taagcaagtt tgagaatcaa gaacaaggat tctcagaact cttggctgat cttgttgagg
     1801 ctgctactgc tcattgccag ttaattgttg tttctaagtt tatagccaaa gtagagggag
     1861 atattgaagg aaaaggagtg aagaaacagc tcaagaatct atgctacatc tacgcactct
     1921 atctccttca caaacacctt ggtgatttcc tcagtacaaa ctctgttact cctgaacaag
     1981 cctcacttgc gaaccagcag cttcgatcac tctactctca ggttcgacca aacgcagtgg
     2041 ccctagtgga cgccttcgac tacacggacc agtatcttgg ctctgtctta ggccgctatg
     2101 acggaaacgt ttatccaaag cttttcgagg aagcgttgaa ggatccactc aatgactcgg
     2161 tggttcctga cggctaccgt gagtacatcc gaccgttgat taagcaacgc ttccgctctg
     2221 ccaaactcta actctttctt tgtgcggcta aaaggggcaa cactgtttta tttatgttat
     2281 attttattca tgtttttaac aaatgtgaag taaactacaa atatcttaag ttatatgggt
     2341 gataaattaa tatttgtaaa atatcacatt tatttatcta tgaagaaata aaacagatta
     2401 attgcatata ca
//
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