LOCUS NM_129124 2412 bp mRNA linear PLN 20-OCT-2022
DEFINITION Arabidopsis thaliana acyl-CoA oxidase 5 (ACX5), mRNA.
ACCESSION NM_129124
VERSION NM_129124.4
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 2412)
AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
Venter,J.C.
TITLE Sequence and analysis of chromosome 2 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 761-768 (1999)
PUBMED 10617197
REFERENCE 2 (bases 1 to 2412)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 2412)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (bases 1 to 2412)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
This record is derived from an annotated genomic sequence
(NC_003071).
On Sep 12, 2016 this sequence version replaced NM_129124.3.
FEATURES Location/Qualifiers
source 1..2412
/organism="Arabidopsis thaliana"
/mol_type="mRNA"
/db_xref="taxon:3702"
/chromosome="2"
/ecotype="Columbia"
gene 1..2412
/gene="ACX5"
/locus_tag="AT2G35690"
/gene_synonym="acyl-CoA oxidase 5; T20F21.12; T20F21_12"
/note="Encodes an acyl-CoA oxidase. Involved in jasmonate
biosynthesis. Expressed uniformly in seedlings and
throughout development."
/db_xref="Araport:AT2G35690"
/db_xref="GeneID:818138"
/db_xref="TAIR:AT2G35690"
CDS 237..2231
/gene="ACX5"
/locus_tag="AT2G35690"
/gene_synonym="acyl-CoA oxidase 5; T20F21.12; T20F21_12"
/inference="Similar to RNA sequence,
EST:INSD:BP600970.1,INSD:AV786007.1,INSD:BE525019.1,
INSD:EG485737.1,INSD:BP591214.1,INSD:EL123904.1,
INSD:EH822431.1,INSD:CB185637.1,INSD:EG485733.1,
INSD:ES001111.1,INSD:ES011374.1,INSD:EG485735.1,
INSD:EL225117.1,INSD:EL323532.1,INSD:EL208544.1,
INSD:BE529030.1"
/inference="similar to RNA sequence,
mRNA:INSD:AY096691.1,INSD:AY074357.1"
/note="acyl-CoA oxidase 5 (ACX5); FUNCTIONS IN: acyl-CoA
dehydrogenase activity, oxidoreductase activity, acting on
the CH-CH group of donors, oxidoreductase activity, FAD
binding, acyl-CoA oxidase activity; INVOLVED IN: fatty
acid beta-oxidation, defense response to insect, jasmonic
acid biosynthetic process, pollen development; LOCATED IN:
peroxisome; EXPRESSED IN: 21 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Acyl-CoA oxidase/dehydrogenase, type1/2, C-terminal
(InterPro:IPR013764), Acyl-CoA dehydrogenase/oxidase
(InterPro:IPR009100), Acyl-CoA oxidase
(InterPro:IPR012258), Acyl-CoA dehydrogenase/oxidase,
N-terminal (InterPro:IPR013786), Acyl-CoA
oxidase/dehydrogenase, central domain
(InterPro:IPR006091), Acyl-CoA oxidase, C-terminal
(InterPro:IPR002655), Acyl-CoA dehydrogenase/oxidase
C-terminal (InterPro:IPR009075); BEST Arabidopsis thaliana
protein match is: acyl-CoA oxidase 1 (TAIR:AT4G16760.1);
Has 8911 Blast hits to 8892 proteins in 1205 species:
Archae - 106; Bacteria - 5834; Metazoa - 1285; Fungi -
415; Plants - 261; Viruses - 0; Other Eukaryotes - 1010
(source: NCBI BLink)."
/codon_start=1
/product="acyl-CoA oxidase 5"
/protein_id="NP_181112.1"
/db_xref="Araport:AT2G35690"
/db_xref="GeneID:818138"
/db_xref="TAIR:AT2G35690"
/translation="MERVDHLADERNKAEFNVDDMKIVWAGSRHAFDVSNRMSRLVAN
DPVFEKSKRAVMSRKELFKNTLRKSVHAWKLINELRLSDEEGLKLRSFMDQPGFLDLH
WGMFVPAIKGQGTEQQQQKWLSLATKMQIIGCYAQTELGHGSNVQGLETTATFDPKTD
QFIIHSPTQTSSKWWPGGLGKVSTHAVIYARLITNGKDHGVHGFIVQLRSLDDHSPLP
GITVGDIGMKFGNGAYNSMDNGFLMFDHFRIPRDQMLMRLSKVTREGKYVASDVPRQL
VYGTMVYVRQSIVSNASTALARAVCIATRYSAVRRQFGSHDGGIETQVINYKTQQNRL
FPLLASAYAFRFVGEWLKWLYTDVTKRLEASDFATLPEAHACTAGLKSMTTSATSDGI
EECRKLCGGHGYLWCSGLPELFAVYVPACTYEGDNVVLQLQVARFLMKTVSQLGSGKA
PSGTTAYMGRAKHLLQCSSGVRNARDWLNPGMVLEAFEARALRMAVTCANNLSKFENQ
EQGFSELLADLVEAATAHCQLIVVSKFIAKVEGDIEGKGVKKQLKNLCYIYALYLLHK
HLGDFLSTNSVTPEQASLANQQLRSLYSQVRPNAVALVDAFDYTDQYLGSVLGRYDGN
VYPKLFEEALKDPLNDSVVPDGYREYIRPLIKQRFRSAKL"
ORIGIN
1 aaatgataaa tacttggaac tttctattac caattttttt gttaccttta ttacattagt
61 ctctctttct gttcaaactt gtaatcctaa aaatagaaca aaatcctctg ttttttctgt
121 aacgaattct ttcttattga atcacccaaa ggtaagagct tttttagtgg cttctctttc
181 tttgatttat ccaatttttc acacacactc gagaatctga gacaatagag agaacaatgg
241 agagagttga tcaccttgcc gatgagagga acaaagcaga gttcaacgtc gacgatatga
301 agatcgtctg ggccggttcc cgccacgctt tcgatgtttc aaatcgtatg tctcgcctcg
361 tcgctaatga tccggtcttt gagaaaagca aaagagctgt gatgagtagg aaagagttgt
421 tcaagaacac gttgaggaaa agtgttcacg cttggaagtt gattaacgag cttcgtctct
481 cagatgagga aggactcaaa ttgagatctt tcatggatca accaggcttc ttggatctgc
541 attggggaat gtttgtgcct gcaattaaag gacaaggcac agagcaacaa caacaaaagt
601 ggttgtcttt agctactaag atgcagataa ttggatgtta tgctcaaact gagcttggtc
661 atggctctaa tgttcaaggc cttgagacaa ccgctacttt tgatccaaag acagatcagt
721 ttatcattca cagtccaact cagacatcat ccaaatggtg gcctggtggg ttaggaaaag
781 tttctactca tgctgttatt tatgctcgtc taataaccaa tggcaaagac catggtgtac
841 atggattcat cgtgcagctg cgtagtttgg atgatcattc tcctcttccg ggtataaccg
901 ttggtgatat cggaatgaag tttggaaacg gggcatataa ctcaatggac aatggttttc
961 ttatgtttga tcattttcgc attcctagag atcaaatgct catgagactg tcaaaagtta
1021 caagagaagg aaaatatgta gcatcagatg ttccaaggca attggtgtat ggtactatgg
1081 tgtatgtgag acagtctatt gtgtcaaatg cttccaccgc gctggctcgg gcagtttgca
1141 ttgctactag gtacagtgct gttcgaaggc agtttggctc acatgatggt ggcattgaga
1201 cacaggtgat taattataaa actcagcaga acaggttgtt tcctctgctg gcatctgcat
1261 atgcatttcg gtttgtaggg gaatggctga agtggctcta cactgatgta acaaaaagac
1321 tagaggccag tgatttcgca acattgcctg aagctcatgc atgcactgct ggattgaagt
1381 ctatgactac ctcagccacc tctgatggga ttgaagaatg tcgtaagtta tgtggtggac
1441 atggatactt gtggtgtagt gggcttcctg aattgtttgc tgtatatgtt cctgcttgca
1501 catacgaggg agacaatgtt gtgttgcagt tacaggttgc tagatttctg atgaagacag
1561 tttcacagtt gggttctgga aaggctcctt ctgggacaac tgcttatatg ggcagagcaa
1621 aacacctttt gcaatgcagt tccggagttc gaaatgctag ggactggtta aaccctggta
1681 tggtgttgga agcttttgaa gcaagagctt tgagaatggc tgttacttgt gctaacaatc
1741 taagcaagtt tgagaatcaa gaacaaggat tctcagaact cttggctgat cttgttgagg
1801 ctgctactgc tcattgccag ttaattgttg tttctaagtt tatagccaaa gtagagggag
1861 atattgaagg aaaaggagtg aagaaacagc tcaagaatct atgctacatc tacgcactct
1921 atctccttca caaacacctt ggtgatttcc tcagtacaaa ctctgttact cctgaacaag
1981 cctcacttgc gaaccagcag cttcgatcac tctactctca ggttcgacca aacgcagtgg
2041 ccctagtgga cgccttcgac tacacggacc agtatcttgg ctctgtctta ggccgctatg
2101 acggaaacgt ttatccaaag cttttcgagg aagcgttgaa ggatccactc aatgactcgg
2161 tggttcctga cggctaccgt gagtacatcc gaccgttgat taagcaacgc ttccgctctg
2221 ccaaactcta actctttctt tgtgcggcta aaaggggcaa cactgtttta tttatgttat
2281 attttattca tgtttttaac aaatgtgaag taaactacaa atatcttaag ttatatgggt
2341 gataaattaa tatttgtaaa atatcacatt tatttatcta tgaagaaata aaacagatta
2401 attgcatata ca
//