LOCUS NM_001331960 2522 bp mRNA linear PLN 20-OCT-2022
DEFINITION Arabidopsis thaliana Leucine-rich repeat protein kinase family
protein (SUB), mRNA.
ACCESSION NM_001331960
VERSION NM_001331960.1
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 2522)
AUTHORS Theologis,A., Ecker,J.R., Palm,C.J., Federspiel,N.A., Kaul,S.,
White,O., Alonso,J., Altafi,H., Araujo,R., Bowman,C.L.,
Brooks,S.Y., Buehler,E., Chan,A., Chao,Q., Chen,H., Cheuk,R.F.,
Chin,C.W., Chung,M.K., Conn,L., Conway,A.B., Conway,A.R.,
Creasy,T.H., Dewar,K., Dunn,P., Etgu,P., Feldblyum,T.V., Feng,J.,
Fong,B., Fujii,C.Y., Gill,J.E., Goldsmith,A.D., Haas,B.,
Hansen,N.F., Hughes,B., Huizar,L., Hunter,J.L., Jenkins,J.,
Johnson-Hopson,C., Khan,S., Khaykin,E., Kim,C.J., Koo,H.L.,
Kremenetskaia,I., Kurtz,D.B., Kwan,A., Lam,B., Langin-Hooper,S.,
Lee,A., Lee,J.M., Lenz,C.A., Li,J.H., Li,Y., Lin,X., Liu,S.X.,
Liu,Z.A., Luros,J.S., Maiti,R., Marziali,A., Militscher,J.,
Miranda,M., Nguyen,M., Nierman,W.C., Osborne,B.I., Pai,G.,
Peterson,J., Pham,P.K., Rizzo,M., Rooney,T., Rowley,D., Sakano,H.,
Salzberg,S.L., Schwartz,J.R., Shinn,P., Southwick,A.M., Sun,H.,
Tallon,L.J., Tambunga,G., Toriumi,M.J., Town,C.D., Utterback,T.,
Van Aken,S., Vaysberg,M., Vysotskaia,V.S., Walker,M., Wu,D., Yu,G.,
Fraser,C.M., Venter,J.C. and Davis,R.W.
TITLE Sequence and analysis of chromosome 1 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 816-820 (2000)
PUBMED 11130712
REFERENCE 2 (bases 1 to 2522)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 2522)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (18-JUL-2017) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (bases 1 to 2522)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 5 (bases 1 to 2522)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
This record is derived from an annotated genomic sequence
(NC_003070).
FEATURES Location/Qualifiers
source 1..2522
/organism="Arabidopsis thaliana"
/mol_type="mRNA"
/db_xref="taxon:3702"
/chromosome="1"
/ecotype="Columbia"
gene 1..2522
/gene="SUB"
/locus_tag="AT1G11130"
/gene_synonym="AT1G11140; SCM; SCRAMBLED; SRF9;
STRUBBELIG; STRUBBELIG-RECEPTOR FAMILY 9; T19D16.8"
/note="Encodes a receptor-like kinase protein with a
predicted extracellular domain of six leucine-rich repeats
and an intracellular serine-threonine kinase domain
expressed throughout the developing root. Regulates
expression of GLABRA2, CAPRICE, WEREWOLF, and ENHANCER OF
GLABRA3. Required for floral organ shape, the development
of the outer integument of ovules, and stem development.
Regulates cell shape and cell division planes in the L2
layer of floral meristems and the L1-derived outer
integument of ovules. Controls specification of epidermal
root hairs. Participates in the coordination of cell
morphogenesis between cell layers during floral
development."
/db_xref="Araport:AT1G11130"
/db_xref="GeneID:837654"
/db_xref="TAIR:AT1G11130"
CDS 178..2250
/gene="SUB"
/locus_tag="AT1G11130"
/gene_synonym="AT1G11140; SCM; SCRAMBLED; SRF9;
STRUBBELIG; STRUBBELIG-RECEPTOR FAMILY 9; T19D16.8"
/codon_start=1
/product="Leucine-rich repeat protein kinase family
protein"
/protein_id="NP_001321706.1"
/db_xref="Araport:AT1G11130"
/db_xref="GeneID:837654"
/db_xref="TAIR:AT1G11130"
/translation="MKVGGGLSDTLADFSSIQVMDFSSNHISGTIPQALPSSIRNLSL
SSNRFTGNIPFTLSFLSDLSELSLGSNLLSGEIPDYFQQLSKLTKLDLSSNILEGHLP
SSMGDLASLKILYLQDNKLTGTLDVIEDLFLTDLNVENNLFSGPIPPNLLKIPNFKKD
GTPFNTSIITPPPPPVVDPPPATHRAPPVPRIPPVSGVPPAPFAPFAPLQPQQHPPPS
PPLVWSPPSSDNGGGDPWNSVSGQPTLQISPPSGSGSGKFWSTQRIILVVSSVAIIVL
VSGLCVTLWRCCRSKIYNRYYSGARKDLQRPYFNKPPSQPTPTMGKVSREPMVKPFDG
YGAGDRKYGYPMPQRAEESRRAMPPTSYYNKDVNTPQKPLQQPPRQFQSNDTASKRAA
HFPPGLNSSSSATVFTIASLQQYTNNFSEENIIGEGSIGNVYRAELRHGKFLAVKKLS
NTINRTQSDGEFLNLVSNVLKLKRGHILELLGYCNEFGQRLLVYEYCPNGSLQDALHL
DRKLHKKLTWNVRINIALGASKALQFLHEVCQPPVVHQNFKSSKVLLDGKLSVRVADS
GLAYMLPPRPTSQMAGYAAPEVEYGSYTCQSDVFSLGVVMLELLTGRRPFDRTRPRGH
QTLAQWAIPRLHDIDALTRMVDPSLHGAYPMKSLSRFADIISRSLQMEPGFRPPISEI
VQDLQHMI"
ORIGIN
1 gatgtgtttg tctgttgttt aataacttct gcagtttcgg cgattaataa cttgtatatc
61 actttgggag caccatctct acatcattgg cttgcttttg gaggagaccc ttgtggagaa
121 aagtggcaag gtgtggtgtg tgactcctca aacatcacag aaataaggat acctggcatg
181 aaggtaggtg gaggcttaag tgatactctg gctgattttt catctatcca agtcatggac
241 ttcagtagca atcatatttc agggacaatt ccgcaggctt tgccttcttc catccgaaac
301 ctatctctct caagcaatcg cttcactggg aacattccct ttacattgtc ctttctatcc
361 gatttgtctg aactgtcatt gggaagcaat cttctatcag gagagatacc agattacttt
421 cagcagctat caaaactgac aaaactggac ttatcgtcta acatactgga ggggcattta
481 ccttcttcca tgggagactt agcttctctt aagatattgt atttgcagga caacaagctc
541 acaggaacac ttgatgttat agaggatctt ttcttaaccg atttgaatgt agaaaacaac
601 ttattctcgg gacctatacc gccaaatcta ttgaaaattc caaacttcaa aaaagatgga
661 actccgttca atacatcgat tataacacca ccgcctccgc ctgtggttga tcctcctccc
721 gctactcacc gtgctcctcc tgttccccgt atccctcctg tttctggtgt tcccccagca
781 ccttttgctc cttttgctcc actgcaacca caacaacatc caccaccatc accacctctg
841 gtctggtcac caccttcttc tgataatgga ggaggagatc cctggaactc tgtgtcaggg
901 caacctacct tgcaaatatc acctccttca ggttcaggat caggaaaatt ctggtccact
961 caaagaatca ttctagtagt ttcttcagtg gccataattg ttcttgtatc cggtttgtgt
1021 gttacacttt ggagatgttg cagaagtaaa atatataacc gatattacag tggagctcgt
1081 aaagatttac aacgaccata cttcaataag cctccatctc aaccaacccc cactatggga
1141 aaagtttctc gggagcctat ggttaagcct ttcgatggat atggagctgg agacaggaaa
1201 tatgggtatc caatgccaca gcgggctgaa gagagccgga gagcaatgcc tcctacttca
1261 tattataata aggatgttaa tacacctcaa aagccgctgc aacaaccacc gaggcagttc
1321 cagtccaatg atactgcttc aaagagagcg gctcatttcc ccccgggctt gaattcctca
1381 tcttctgcta ctgttttcac cattgcttca cttcagcaat acacaaataa tttctcagaa
1441 gagaatataa tcggggaagg gtcgattggt aatgtctaca gagctgagct tcgtcatgga
1501 aagtttcttg cggtgaagaa gctgagcaat accatcaaca gaacacagag tgacggcgaa
1561 ttcctcaatc tagtctccaa tgtgttgaag cttaaacgcg gtcatatatt ggagcttctt
1621 ggttactgta acgagtttgg tcaaaggtta cttgtgtatg agtactgtcc taatggatca
1681 cttcaagatg cactacattt ggatcgcaag ttgcacaaga agctcacttg gaatgtacgt
1741 ataaatattg cattaggagc ttcaaaggca ttgcagtttc ttcatgaggt atgtcaaccg
1801 ccggttgttc accagaattt caagtcttcc aaggttcttc ttgatggaaa gctctcagta
1861 cgtgttgcag acagcggttt ggcttatatg ttaccaccac gcccaacgag tcagatggcg
1921 ggttatgccg ctcctgaggt tgagtatgga agctacactt gtcagagcga cgtatttagc
1981 cttggggttg taatgttaga actgctcact ggacgcagac catttgacag gacaaggccg
2041 aggggacatc aaacactagc tcagtgggcg attcctcggc ttcatgacat cgatgcgttg
2101 acaagaatgg ttgatccgtc attacacgga gcgtatccaa tgaaatcatt gtcacgtttt
2161 gcagatatca tatcacgttc actgcagatg gaaccaggat ttagaccgcc gatatcagaa
2221 atagtccaag atcttcaaca tatgatctaa gatacacaac cttggactaa gacgcagaag
2281 caatagttta ttgtcagatt cttgttcttt gtcctttgat gaatgaaagt atttcttttg
2341 tattataata acactttatg tatgttgttg gctgtatgaa atgagctatg ggatcatcat
2401 tatgtaaccc caatcccatt accggctcaa acattattca ccaacctgat catgtattta
2461 gattctattt tctgaaaagg ataaacattt tttgaatcaa aagacattaa aattcaagaa
2521 ca
//