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Sample GSM994858 Query DataSets for GSM994858
Status Public on Nov 01, 2012
Title Dendritic cells BDCA1 donor3
Sample type RNA
 
Source name Healthy donor3
Organism Homo sapiens
Characteristics cell: primary cells
cell population: Dendritic cells BDCA1
Extracted molecule total RNA
Extraction protocol RNA was extracted using Rneasy Microquit (Qiagen).
Label biotin
Label protocol 100 ng of polysomal-bound RNA were employed to synthesize double-stranded cDNA using 2 successive reverse-transcription reactions according to the std affymetrix protocol
 
Hybridization protocol Labelled DNA was hybrized on the Affymetrix Human Gene 1.1 ST processed on an Affymetrix GeneTitan device.
Scan protocol Array scanning was performed according to the manufacturer's instruction (Affymetrix)
Description RMA expression value derived from Genesprings GX 7.3 (Agilent)
Data processing Statistical analysis were performed using GenSpring GX 7.3 (Agilent). Expression data was normalized using the RMA algorithm. Probes with an expression lower than 25 Units were filtered out.
 
Submission date Aug 30, 2012
Last update date Nov 01, 2012
Contact name Maxime Touzot
E-mail(s) [email protected]
Organization name Institut Curie
Lab U932
Street address 26 rue d'ULM
City PAris
ZIP/Postal code 75005
Country France
 
Platform ID GPL11532
Series (1)
GSE40484 Human inflammatory dendritic cells induce Th17 differentiation

Data table header descriptions
ID_REF
VALUE log(2) RMA

Data table
ID_REF VALUE
7892501 6.754771
7892502 8.384938
7892503 3.131464
7892504 8.092724
7892505 3.793497
7892506 7.513663
7892507 3.048078
7892508 8.656036
7892509 10.78212
7892510 6.432198
7892511 6.298726
7892512 4.886393
7892513 5.262928
7892514 10.4119
7892515 8.882996
7892516 3.992625
7892517 7.824368
7892518 4.834882
7892519 6.677886
7892520 8.772465

Total number of rows: 33297

Table truncated, full table size 549 Kbytes.




Supplementary file Size Download File type/resource
GSM994858_IS09_ARN0019_s1h1_C09_hGene.CEL.gz 4.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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