NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM970 Query DataSets for GSM970
Status Public on Feb 12, 2002
Title Elutriation2:Sample2:Time2.0hrs
Sample type RNA
 
Channel 1
Source name Ref Pool
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name 2.2.5
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description ScanAlyze version 2.03 scanning software was used.
Keywords = Cell-cycle
Keywords = Elutriation
Lot batch = y744n70
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) [email protected]
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL59
Series (1)
GSE24 Elutriation time course

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 498 464 425 848 400 472 448 492 440 932 .896 0 .05 .813 15 18 1.063 .966 .941 1.035 .854 653 69 1 12 60 71 .05
2 497 440 514 924 508 459 416 457 558 1015 .963 0 .118 1.096 27 31 1.012 .921 .988 1.086 .953 476 69 1 12 70 81 .118
3 564 400 1198 1410 1082 500 328 360 1189 1549 .944 0 -.011 .907 46 44 1.107 1.008 .903 .992 .863 376 69 1 12 80 91 -.011
4 525 376 414 705 409 453 296 325 450 775 .878 0 .12 .986 39 47 1.012 .92 .988 1.087 .837 376 69 1 12 90 101 .12
5 493 376 1367 2728 2440 415 288 316 2682 2998 .947 0 .972 1.806 39 47 .56 .51 1.785 1.962 1.679 376 69 1 12 100 111 .972
6 491 368 211 496 216 412 280 308 237 545 .882 0 .168 1 37 37 .977 .89 1.024 1.123 .92 376 69 1 12 110 121 .168
7 402 368 334 590 318 305 272 299 349 648 .937 0 .063 .979 30 33 1.05 .957 .952 1.045 .864 376 69 1 12 120 131 .063
8 395 368 361 611 339 299 272 299 372 671 .95 0 .043 .928 49 49 1.065 .97 .939 1.03 .89 376 69 1 12 130 141 .043
9 546 368 206 462 198 421 264 290 218 508 .974 0 .082 .967 27 23 1.04 .945 .961 1.058 .931 376 69 1 12 140 151 .082
10 531 360 347 563 291 410 272 299 320 619 .943 0 -.117 .919 39 36 1.192 1.084 .839 .922 .853 381 69 1 12 150 161 -.117
11 529 360 279 509 237 408 272 299 260 559 .924 0 -.102 .823 39 42 1.177 1.073 .849 .932 .797 390 69 1 12 160 171 -.102
12 537 368 346 592 320 418 272 299 352 651 .938 0 .025 .936 36 42 1.081 .983 .925 1.017 .84 399 69 1 12 170 181 .025
13 399 360 112 363 83 304 280 308 91 399 .925 0 -.3 .857 18 18 1.349 1.231 .741 .813 .866 408 69 1 12 180 191 -.3
14 467 368 208 449 169 371 280 308 185 493 .946 0 -.169 .818 17 18 1.231 1.124 .813 .889 .737 413 69 1 12 190 201 -.169
15 473 376 315 560 280 375 280 308 307 615 .961 0 -.037 .839 20 20 1.125 1.026 .889 .975 .818 413 69 1 12 200 211 -.037
16 516 368 927 1087 807 405 280 308 887 1195 .962 0 -.064 .848 26 28 1.149 1.045 .871 .957 .84 417 69 2 13 210 221 -.064
17 936 376 157 421 149 406 272 299 164 463 .966 0 .063 1 21 24 1.054 .957 .949 1.045 .926 417 69 2 13 220 231 .063
18 880 376 148 314 42 383 272 299 46 345 .455 0 -1.686 .6 18 15 3.524 3.217 .284 .311 .103 417 69 2 13 230 241 -1.686
19 864 368 29096 762 490 367 272 299 538 837 0 0 -5.757 .017 94 73 59.38 54.082 .017 .018 0 417 69 2 13 240 251 -5.757
20 835 368 898 2306 2034 373 272 299 2235 2534 .845 0 1.315 1.91 63 68 .441 .402 2.265 2.489 2.117 417 69 2 13 250 261 1.315

Total number of rows: 7680

Table truncated, full table size 945 Kbytes.




Supplementary data files not provided
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap