NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM969 Query DataSets for GSM969
Status Public on Feb 12, 2002
Title Elutriation2:Sample2:Time1.5hrs
Sample type RNA
 
Channel 1
Source name Ref Pool
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name 2.2.4
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description ScanAlyze version 2.03 scanning software was used.
Keywords = Cell-cycle
Keywords = Elutriation
Lot batch = y744n69
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) [email protected]
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL59
Series (1)
GSE24 Elutriation time course

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 452 448 228 658 234 422 424 505 278 783 .948 0 .286 1.5 13 15 .974 .82 1.026 1.219 .954 858 69 6 17 58 69 .286
2 452 448 602 1066 642 424 424 505 764 1269 .957 0 .344 1.148 23 24 .938 .788 1.066 1.269 1.034 681 69 6 17 68 79 .344
3 458 448 1671 2226 1794 435 432 514 2136 2650 .974 0 .354 1 55 57 .931 .782 1.074 1.278 1.049 581 69 6 17 78 89 .354
4 457 448 242 618 186 443 432 514 222 736 .933 0 -.124 .891 31 26 1.301 1.09 .769 .917 .811 581 69 6 17 88 99 -.124
5 456 448 1193 3881 3441 449 440 524 4096 4620 .941 0 1.78 2.904 43 60 .347 .291 2.884 3.433 2.531 581 69 6 17 98 109 1.78
6 459 456 236 681 233 458 448 533 278 811 .916 0 .236 .865 33 31 1.013 .849 .987 1.178 .892 581 69 6 17 108 119 .236
7 457 456 458 831 367 464 464 552 437 989 .938 0 -.068 .87 39 37 1.248 1.048 .801 .954 .812 581 69 6 17 118 129 -.068
8 461 456 413 779 307 479 472 562 365 927 .853 0 -.178 .742 52 50 1.345 1.132 .743 .884 .634 586 69 6 17 128 139 -.178
9 462 464 142 591 111 488 480 571 133 704 .872 0 -.094 .833 17 13 1.279 1.068 .782 .937 .862 595 69 6 17 138 149 -.094
10 467 464 153 583 95 509 488 581 113 694 .897 0 -.437 .733 17 13 1.611 1.354 .621 .739 .591 604 69 6 17 148 159 -.437
11 468 464 184 575 79 514 496 590 95 685 .907 0 -.954 .56 21 18 2.329 1.937 .429 .516 .719 617 69 7 18 158 169 -.954
12 470 464 161 587 83 526 504 600 99 699 .879 0 -.702 .824 18 20 1.94 1.626 .516 .615 .762 622 69 7 18 168 179 -.702
13 479 472 23 520 572 544 648 619 .849 0 .811 5 8 .919 627 69 7 18 178 189
14 514 480 420 1190 606 632 584 695 722 1417 .971 0 .782 1.25 20 20 .693 .582 1.443 1.719 1.406 627 69 7 18 188 199 .782
15 529 488 1309 2225 1585 682 640 762 1887 2649 .947 0 .528 1.379 39 37 .826 .694 1.211 1.442 1.155 627 69 7 18 198 209 .528
16 537 496 702 1418 738 714 680 810 878 1688 .92 0 .323 1.235 27 26 .951 .8 1.051 1.251 .933 627 69 7 18 208 219 .323
17 552 496 126 880 224 710 656 781 267 1048 .728 0 1.083 2.412 17 21 .563 .472 1.778 2.119 .921 635 69 7 18 218 229 1.083
18 532 496 70 615 671 624 743 732 .428 0 2.111 10 2 .595 644 69 7 18 228 239
19 523 496 34087 841 201 666 640 762 239 1001 0 0 -7.156 .009 85 30 169.587 142.623 .006 .007 0 653 69 7 18 238 249 -7.156
20 520 488 1046 3592 2968 655 624 743 3533 4276 .758 0 1.756 2.764 62 71 .352 .296 2.837 3.378 2.221 666 69 8 19 248 259 1.756

Total number of rows: 7680

Table truncated, full table size 949 Kbytes.




Supplementary data files not provided
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap