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Sample GSM957761 Query DataSets for GSM957761
Status Public on Dec 06, 2012
Title Cell line SLM2, mutant status WT, condition Treated with Diclofenac 1
Sample type RNA
 
Source name RNA from Cell line SLM2, mutant status WT, condition Treated with Diclofenac
Organism Homo sapiens
Characteristics cell line: SLM2
mutation: WT
treatment: Treated with Diclofenac
Growth protocol SLM2, VMM39, and DM331 cells were plated and incubated overnight before being treated, in duplicate, with inhibitors or vehicle control in phenol red-free RPMI Medium 1640 without fetal bovine serum for 8 hours at 37°C. Cells were placed on ice and rinsed with cold 1x PBS.
Extracted molecule total RNA
Extraction protocol Cells were collected and RNA was isolated using the Qiashredder (Qiagen, Valencia, CA) and RNeasy Mini Kit (Qiagen, Valencia, CA).
Label biotin
Label protocol The gene array was performed using Illumina 3’IVT human HT-12 BeadChip arrays by Gene Analysis (Durham, NC).
 
Hybridization protocol The gene array was performed using Illumina 3’IVT human HT-12 BeadChip arrays by Gene Analysis (Durham, NC).
Scan protocol The gene array was performed using Illumina 3’IVT human HT-12 BeadChip arrays by Gene Analysis (Durham, NC).
Description Cell line SLM2, mutant status WT, condition Treated with Diclofenac 1
Data processing Quantile normalized and log2-transformed
 
Submission date Jul 09, 2012
Last update date Dec 06, 2012
Contact name Stephen Turner
Organization name Signature Science, LLC
Street address 1670 Discovery Drive
City Charlottesville
State/province VA
ZIP/Postal code 22911
Country USA
 
Platform ID GPL6947
Series (1)
GSE39192 Synthetic lethal screening with small molecule inhibitors provides a pathway to rational combination therapies for melanoma

Data table header descriptions
ID_REF
VALUE Quantile normalized and log2-transformed hybridization intensities
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1802380 6.19835689 0
ILMN_1893287 1.496349214 0.383399218
ILMN_1736104 1.367915317 0.274044782
ILMN_1792389 1.322754255 0.588932812
ILMN_1854015 4.325289401 0.009222661
ILMN_1904757 1.132658137 0.810276687
ILMN_1740305 2.33452472 0.129117265
ILMN_1665168 2.245766802 0.139657438
ILMN_2375156 1.443267474 0.444005281
ILMN_1705423 2.5869265 0.102766797
ILMN_1716072 1.373486435 0.530961812
ILMN_1697642 8.827769941 0
ILMN_1788184 1.455529187 0.432147563
ILMN_1681845 7.679150126 0
ILMN_1823296 1.157165598 0.776021063
ILMN_1889845 1.417437526 0.475625813
ILMN_1746923 1.597525219 0.214756265
ILMN_1690979 2.768545315 0.080368906
ILMN_1811114 1.432673845 0.450592875
ILMN_1660729 1.119855552 0.831357062

Total number of rows: 48803

Table truncated, full table size 1660 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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