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Sample GSM957749 Query DataSets for GSM957749
Status Public on Dec 06, 2012
Title Cell line VMM39, mutant status Ras, condition Treated with Diclofenac 2
Sample type RNA
 
Source name RNA from Cell line VMM39, mutant status Ras, condition Treated with Diclofenac
Organism Homo sapiens
Characteristics cell line: VMM39
mutation: Ras
treatment: Treated with Diclofenac
Growth protocol SLM2, VMM39, and DM331 cells were plated and incubated overnight before being treated, in duplicate, with inhibitors or vehicle control in phenol red-free RPMI Medium 1640 without fetal bovine serum for 8 hours at 37°C. Cells were placed on ice and rinsed with cold 1x PBS.
Extracted molecule total RNA
Extraction protocol Cells were collected and RNA was isolated using the Qiashredder (Qiagen, Valencia, CA) and RNeasy Mini Kit (Qiagen, Valencia, CA).
Label biotin
Label protocol The gene array was performed using Illumina 3’IVT human HT-12 BeadChip arrays by Gene Analysis (Durham, NC).
 
Hybridization protocol The gene array was performed using Illumina 3’IVT human HT-12 BeadChip arrays by Gene Analysis (Durham, NC).
Scan protocol The gene array was performed using Illumina 3’IVT human HT-12 BeadChip arrays by Gene Analysis (Durham, NC).
Description Cell line VMM39, mutant status Ras, condition Treated with Diclofenac 2
Data processing Quantile normalized and log2-transformed
 
Submission date Jul 09, 2012
Last update date Dec 06, 2012
Contact name Stephen Turner
Organization name Signature Science, LLC
Street address 1670 Discovery Drive
City Charlottesville
State/province VA
ZIP/Postal code 22911
Country USA
 
Platform ID GPL6947
Series (1)
GSE39192 Synthetic lethal screening with small molecule inhibitors provides a pathway to rational combination therapies for melanoma

Data table header descriptions
ID_REF
VALUE Quantile normalized and log2-transformed hybridization intensities
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1802380 7.760070663 0
ILMN_1893287 1.406390623 0.484848499
ILMN_1736104 1.19683377 0.764163375
ILMN_1792389 2.656241244 0.101449274
ILMN_1854015 3.396560187 0.036890645
ILMN_1904757 1.436446286 0.449275374
ILMN_1740305 1.245191623 0.687747061
ILMN_1665168 3.033752505 0.061923582
ILMN_2375156 2.836881208 0.073781289
ILMN_1705423 1.401514496 0.487483531
ILMN_1716072 1.293162971 0.631093562
ILMN_1697642 9.285160753 0
ILMN_1788184 1.440232084 0.444005281
ILMN_1681845 8.32241115 0
ILMN_1823296 1.506287649 0.359683782
ILMN_1889845 1.055565526 0.918313563
ILMN_1746923 1.538862721 0.295125157
ILMN_1690979 2.294999277 0.148880109
ILMN_1811114 1.397936127 0.492753625
ILMN_1660729 1.405844365 0.484848499

Total number of rows: 48803

Table truncated, full table size 1657 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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