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GEO accession:
Sample GSM94340
Query DataSets for GSM94340
Status
Public on Jul 01, 2006
Title
PBMCs from an HIV positive transmitter mother in Botswana (7)
Sample type
RNA
Source name
Human peripheral blood mononuclear cells (PBMCs) from an HIV positive Batswana woman
Organism
Homo sapiens
Characteristics
Botswana mother between 17 and 44 years old. HIV positive. Transmitted virus to child.
Extracted molecule
total RNA
Label
Biotin
Description
HIV seropositive and drug naive
HIV seropositive transmitter mothers
Data processing
Data scaled with GCOS
Submission date
Jan 30, 2006
Last update date
Sep 13, 2006
Contact name
Monty Montano
E-mail(s)
[email protected]
Phone
617 414-4806
Fax
617 414-3561
URL
http://www.bmc.org/HIV-AIDS/MontyMontano.htm
Organization name
Boston Medical Center
Department
Medicine
Lab
Center for HIV-1/AIDS Care and Research
Street address
650 Albany Street, Bldg X, room 640
City
Boston
State/province
MA
ZIP/Postal code
02118
Country
USA
Platform ID
GPL571
Series (1)
GSE4124
Gene-expression profiling of HIV-1 infection and perinatal transmission in Botswana
Data table header descriptions
ID_REF
VALUE
GCOS scaled intensity values
DETECTION_P-VALUE
Quality of measurement
ABS_CALL
Present, absent or marginal call
SCALED_VALUE
Scaled intensity values
Data table
ID_REF
VALUE
DETECTION_P-VALUE
ABS_CALL
SCALED_VALUE
1007_s_at
10.2
0.47938
A
231.489
1053_at
4.4
0.378184
A
99.858
117_at
33.3
0.007543
P
755.7435
121_at
23.3
0.07383
A
528.7935
1255_g_at
0.3
0.715285
A
6.8085
1294_at
67.2
0.004863
P
1525.104
1316_at
4.8
0.07383
A
108.936
1320_at
1.3
0.939612
A
29.5035
1405_i_at
1685
0.000491
P
38241.075
1431_at
0.4
0.715253
A
9.078
1438_at
5.8
0.218983
A
131.631
1487_at
21.1
0.081337
A
478.8645
1494_f_at
11.5
0.189687
A
260.9925
1598_g_at
14.6
0.378184
A
331.347
160020_at
15.4
0.07383
A
349.503
1729_at
22.2
0.043968
P
503.829
177_at
5.8
0.117121
A
131.631
1773_at
3.7
0.561639
A
83.9715
179_at
29.9
0.234557
A
678.5805
1861_at
7
0.138765
A
158.865
Total number of rows:
22277
Table truncated, full table size
743 Kbytes
.
Supplementary data files not provided
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