 |
 |
GEO help: Mouse over screen elements for information. |
|
| Status |
Public on Dec 11, 2012 |
| Title |
msl3_2 |
| Sample type |
SRA |
| |
|
| Source name |
MSL3 ChIP-Seq
|
| Organism |
Drosophila melanogaster |
| Characteristics |
cell type: S2
ip antibody: polyclonal rabbit MSL3, crude serum
shearing technologie: Covaris S220
chromatin size (bp): 180
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
As performed by sequencing service
|
| |
|
| Library strategy |
ChIP-Seq |
| Library source |
genomic |
| Library selection |
ChIP |
| Instrument model |
Illumina HiSeq 2000 |
| |
|
| Description |
service: Norwegian Sequencing Centre, Oslo, Norway
|
| Data processing |
Sequenced reads were mapped to dm3 whole genome using bowtie version 0.12.7 with parameters -m 1 (single reads) and --trim3 65 -X 1500 (paired end reads)
calculation of genomic coverage vectors for each sample using a 150 bp read extension for single read samples
arcsine transformation of coverages
averaging of replicate samples
subtraction of common background (input)
Genome_build: dm3
Supplementary_files_format_and_content: bedgraph files of the mean genomic coverage
|
| |
|
| Submission date |
May 09, 2012 |
| Last update date |
May 15, 2019 |
| Contact name |
Tobias Straub |
| E-mail(s) |
[email protected]
|
| Organization name |
LMU Munich
|
| Department |
Biomedical Center, Bioinformatics
|
| Street address |
Großhadener Str. 9
|
| City |
Martinsried |
| ZIP/Postal code |
82152 |
| Country |
Germany |
| |
|
| Platform ID |
GPL13304 |
| Series (2) |
| GSE37864 |
ChIP-Seq profiles of MSL1, MSL2, MSl3, MOF, MLE, H4K16ac and RNA Polymerase II phosphorlyated on Serine 5 in Drosophila S2 cells |
| GSE37865 |
Differential Chromatin Binding of the Drosophila Dosage Compensation Complex |
|
| Relations |
| SRA |
SRX146997 |
| BioSample |
SAMN00991801 |
| Supplementary data files not provided |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
|
|
|
|
 |
