 |
 |
GEO help: Mouse over screen elements for information. |
|
| Status |
Public on Jul 28, 2006 |
| Title |
colorectal tumor c330 |
| Sample type |
RNA |
| |
|
| Source name |
cololrectal tumor
|
| Organism |
Homo sapiens |
| Characteristics |
tumor tissue
|
| Extracted molecule |
total RNA |
| Extraction protocol |
colon tumor samples.Total RNA extracted from the fresh frozen tumors using Trizol reagent (GibcoBRL) an purified using RNeasy kit (Qiagen).
|
| Label |
biotin
|
| Label protocol |
Approximately 8 µg of total RNA was processed to produce biotinylated cRNA targets.
|
| |
|
| Hybridization protocol |
standard Affymetrix procedures
|
| Scan protocol |
standard Affymetrix procedures
|
| Description |
conventional colorectal tumor, non-mucinous, Dukes Stage c, MSS, no cancer in the family, female, Proximal Location , Tumor Grade 2
|
| Data processing |
Affymetrix Microarray Suite version 5.0
|
| |
|
| Submission date |
Jan 13, 2006 |
| Last update date |
Jul 28, 2006 |
| Contact name |
Antti Kokko |
| Organization name |
University of Helsinki
|
| Department |
Dept of Medical Genetics
|
| Lab |
Tumorigenesis group
|
| Street address |
POBOX 63 (Haartmaninkatu 8)
|
| City |
Helsinki |
| ZIP/Postal code |
00014 University of Helsinki |
| Country |
Finland |
| |
|
| Platform ID |
GPL96 |
| Series (1) |
| GSE4045 |
Classification of serrated colorectal tumors |
|
| Data table header descriptions |
| ID_REF |
|
| VALUE |
MAS5-calculated Signal intensity |
| ABS_CALL |
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC) |
| DETECTION P-VALUE |
'detection p-value', p-value that indicates the significance level of the detection call |
| Data table |
| ID_REF |
VALUE |
ABS_CALL |
DETECTION P-VALUE |
| AFFX-BioB-5_at |
96.4 |
P |
0.005565 |
| AFFX-BioB-M_at |
165.8 |
P |
0.000147 |
| AFFX-BioB-3_at |
83.1 |
P |
0.005565 |
| AFFX-BioC-5_at |
277.9 |
P |
0.000297 |
| AFFX-BioC-3_at |
185.4 |
P |
0.000195 |
| AFFX-BioDn-5_at |
209.2 |
P |
0.000258 |
| AFFX-BioDn-3_at |
1650.2 |
P |
0.000195 |
| AFFX-CreX-5_at |
2492.4 |
P |
0.000044 |
| AFFX-CreX-3_at |
3471.1 |
P |
0.000044 |
| AFFX-DapX-5_at |
9.5 |
A |
0.227636 |
| AFFX-DapX-M_at |
10.5 |
A |
0.313723 |
| AFFX-DapX-3_at |
6.6 |
A |
0.686277 |
| AFFX-LysX-5_at |
4.2 |
A |
0.455413 |
| AFFX-LysX-M_at |
3.4 |
A |
0.749204 |
| AFFX-LysX-3_at |
8.3 |
A |
0.559354 |
| AFFX-PheX-5_at |
1.3 |
A |
0.814869 |
| AFFX-PheX-M_at |
2.5 |
A |
0.834139 |
| AFFX-PheX-3_at |
14.1 |
A |
0.5 |
| AFFX-ThrX-5_at |
3.8 |
A |
0.645547 |
| AFFX-ThrX-M_at |
18.8 |
A |
0.300606 |
Total number of rows: 22283
Table truncated, full table size 580 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GSM92254.CEL.gz |
3.4 Mb |
(ftp)(http) |
CEL |
| GSM92254.EXP.gz |
498 b |
(ftp)(http) |
EXP |
| GSM92254.RPT.gz |
959 b |
(ftp)(http) |
RPT |
|
|
|
|
 |
