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Sample GSM91989 Query DataSets for GSM91989
Status Public on Apr 10, 2006
Title Leafdiscs_DTT_control1
Sample type RNA
 
Source name Leaf
Organism Arabidopsis thaliana
Characteristics control (-DTT) to DTT treatment (+DTT) Leafdiscs_DTT_treatment1
ecotype: Col-0
developmental stage: full grown leaves of non-flowering plants
Treatment protocol Source leaf discs taken at the end of the night from non-flowering plants. Discs were incubated in the dark for one hour in 2mM MES buffer, pH 6.5 with (treatment) or without (control) 5mM dithiotreitol (DTT). After incubation discs were snap-frozen in liquid nitrogen.
Growth protocol Plants were grown in a phytotron with a 14h day / 10h night. Temperature: 20°C / 16°C. Humidity: 60% / 75%. Lightintensity: .
Extracted molecule total RNA
Extraction protocol Total RNA extraction using TRIzol Total RNA Isolation Reagent, according to the protocol supplied by the manufacturer GibcoBRL Life-Technologies.
Label biotin
Label protocol 10µg total RNA was biotin labelled
 
Hybridization protocol standard Affymetrix protocol
Scan protocol standard Affymetrix protocol
Description source leaf discs of Wild type Arabidopsis thaliana Col0 rosette plants.
Data processing MAS5
 
Submission date Jan 12, 2006
Last update date Apr 10, 2006
Contact name Joost T. van Dongen
E-mail(s) [email protected]
Phone +49 (0)331 5678353
URL http://www.mpimp-golm.mpg.de
Organization name Max Planck Institute of Molecular Plant Physiology
Street address Am Muehlenberg 1
City Potsdam
ZIP/Postal code D-14476
Country Germany
 
Platform ID GPL198
Series (1)
GSE4021 effect of redox on gene expression

Data table header descriptions
ID_REF
VALUE MAS5 calculated expression values
ABS_CALL detection call as defined by MAS5: present (P), absent (A), or marginal (M)
DETECTION P-VALUE indicates the significance level of the detection call as calculated by MAS5

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 60.9 P 0.00141
AFFX-BioB-M_at 72.1 P 0.00006
AFFX-BioB-3_at 48.8 P 0.000169
AFFX-BioC-5_at 181.9 P 0.000147
AFFX-BioC-3_at 90.8 P 0.000169
AFFX-BioDn-5_at 147.5 P 0.000052
AFFX-BioDn-3_at 606.9 P 0.000052
AFFX-CreX-5_at 1525.2 P 0.000044
AFFX-CreX-3_at 2062.4 P 0.000044
AFFX-DapX-5_at 0.7 A 0.659339
AFFX-DapX-M_at 0.9 A 0.910522
AFFX-DapX-3_at 0.4 A 0.995516
AFFX-LysX-5_at 0.5 A 0.897835
AFFX-LysX-M_at 1 A 0.966323
AFFX-LysX-3_at 0.8 A 0.645547
AFFX-PheX-5_at 0.4 A 0.995002
AFFX-PheX-M_at 0.8 A 0.883887
AFFX-PheX-3_at 1.4 A 0.760937
AFFX-ThrX-5_at 0.7 A 0.953518
AFFX-ThrX-M_at 0.4 A 0.989683

Total number of rows: 22810

Table truncated, full table size 574 Kbytes.




Supplementary data files not provided

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