|
| Status |
Public on Sep 28, 2012 |
| Title |
RNAPII |
| Sample type |
SRA |
| |
|
| Source name |
MCF10A
|
| Organism |
Homo sapiens |
| Characteristics |
cell line: non-tumorigenic epithelial cell line MCF 10A
chip antibody: anti-RNAPII N-20 rabbit polyclonal (Santa Cruz, sc899)
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
ChIP-Seq DNA Sample Prep Kit (Illumina, inc.)
|
| |
|
| Library strategy |
ChIP-Seq |
| Library source |
genomic |
| Library selection |
ChIP |
| Instrument model |
Illumina Genome Analyzer IIx |
| |
|
| Data processing |
Image analysis: Firecrest (Illumina pipeline 1.9, default parameters)
base calling: Bustard (Illumina pipeline 1.9, default parameters)
alignment: BOWTIE v 0.12.7 (default parameters)
tag density files: genomeCoverageBed (from BEDTools suite)
Genome_build: hg 18
Supplementary_files_format_and_content: bedGraph: Tag density profiles
|
| |
|
| Submission date |
Apr 18, 2012 |
| Last update date |
May 15, 2019 |
| Contact name |
Alessandro Gardini |
| E-mail(s) |
[email protected]
|
| Phone |
305-243-7394
|
| Organization name |
University of Miami
|
| Department |
Sylvester Comprehensive Cancer Center
|
| Lab |
Ramin Shiekhattar
|
| Street address |
1501 NW 10 Avenue
|
| City |
Miami |
| State/province |
FL |
| ZIP/Postal code |
33136 |
| Country |
USA |
| |
|
| Platform ID |
GPL10999 |
| Series (2) |
| GSE37403 |
Genome-wide analysis of the SNAPc complex [ChIP-Seq] |
| GSE41529 |
Genome-wide analysis of the SNAPc complex |
|
| Relations |
| SRA |
SRX143301 |
| BioSample |
SAMN00858153 |
