NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM88918 Query DataSets for GSM88918
Status Public on Oct 23, 2006
Title E. coli K12 BW25113 w/t suspension after 15 hr of culturing
Sample type RNA
 
Source name E. coli suspension
Organism Escherichia coli
Characteristics RNA extracted from suspenion cells of E. coli K12 wild type after 15 hours of growth in LB
Extracted molecule total RNA
Extraction protocol RNA extracted from suspenion cells of E. coli K12 wild type after 15 hours of growth in LB
Label biotin
Label protocol Affimetrix Protocol
 
Hybridization protocol Affimetrix Protocol
Scan protocol Affimetrix Protocol
Description RNA extracted from suspenion cells of E. coli K12 wild type after 15 hours of growth in LB
Data processing MAS 5.0 Expression Analysis Default Settings
 
Submission date Dec 21, 2005
Last update date Oct 23, 2006
Contact name Thomas K. Wood
E-mail(s) [email protected]
Phone 979-862-1588
Fax 979-845-6884
URL http://cheweb.tamu.edu/orgs/groups/Wood/
Organization name Texas A & M University
Department Artie McFerrin Department of Chemical Engineering
Street address 220 Jack E. Brown Building
City College Station
State/province TX
ZIP/Postal code 77843-3122
Country USA
 
Platform ID GPL199
Series (1)
GSE3905 Temporal Biofilm Expression of E. coli K-12 after 4, 7, 15, and 24 hr

Data table header descriptions
ID_REF
B4 Stat Pairs Number of perfect match probes for the probeset
B4 Stat Pairs Used Number of the mismatch probes for the probeset
VALUE Signal intensity accepted from the probeset
ABS_CALL Probeset signal: absent or present
DETECTION P-VALUE Probeset signal: p-value (shows the coherency of the results)

Data table
ID_REF B4 Stat Pairs B4 Stat Pairs Used VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 2 2 275.3 A 0.375
AFFX-BioC-3_at 1 1 257.9 A 0.25
AFFX-CreX-5_at 20 20 45.2 A 0.5
AFFX-CreX-3_at 20 20 20.3 A 0.995983
AFFX-DapX-5_at 20 20 61232.3 P 0.000044
AFFX-DapX-M_at 20 20 65886.4 P 0.000044
AFFX-DapX-3_at 20 20 48439.1 P 0.000044
AFFX-LysX-5_at 20 20 9385.7 P 0.000044
AFFX-LysX-M_at 20 20 8114.7 P 0.000044
AFFX-LysX-3_at 20 20 8106.6 P 0.000044
AFFX-PheX-5_at 20 20 22830.4 P 0.000044
AFFX-PheX-M_at 20 20 18015.4 P 0.000044
AFFX-PheX-3_at 20 20 11737.1 P 0.000044
AFFX-ThrX-5_at 20 20 41497.6 P 0.000044
AFFX-ThrX-M_at 20 20 37488.7 P 0.000044
AFFX-ThrX-3_at 20 20 29446.5 P 0.000044
AFFX-TrpnX-5_at 20 20 29.8 A 0.834139
AFFX-TrpnX-M_at 20 20 34 A 0.440646
AFFX-TrpnX-3_at 20 20 9.4 A 0.953518
AFFX-HXB2_5_at 20 20 3.2 A 0.994435

Total number of rows: 7312

Table truncated, full table size 304 Kbytes.




Supplementary data files not provided

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap