NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM872217 Query DataSets for GSM872217
Status Public on Mar 14, 2012
Title BMM_F2D_122_F
Sample type RNA
 
Source name Bone marrow derived macrophages from female DBA/2J x AKR/J F2 mice
Organism Mus musculus
Characteristics gender: female
strain: DBA/2JxAKR/J
cell type: bone marrow derived macrophages (BMM)
Extracted molecule total RNA
Extraction protocol standard as recommended by illumina
Label Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description Bone marrow was flushed with DMEM and cells were grown for 10-14 days in Bone marrow macrophages complete media
Data processing The data was preprocessed by Bioconductor lumi package (version 2.6.0). It was vst transformed and quantile normalized.
 
Submission date Feb 08, 2012
Last update date Mar 14, 2012
Contact name Jeff Hsu
E-mail(s) [email protected]
Phone 2162443723
Organization name Cleveland Clinic Lerner Research Institute
Department Cellular and Molecular Medicine
Lab Smith
Street address 9500 Euclid Ave
City Cleveland
State/province OH
ZIP/Postal code 44195
Country USA
 
Platform ID GPL6885
Series (1)
GSE35676 eQTL study of bone marrow derived macrophages and endothelial cells from DBA2xAKR F2 mice

Data table header descriptions
ID_REF
VALUE normalized signal intensity
RAW_VALUE raw signal intensity
BEAD_STDERR the standard error of the probe measurements
Detection_Pval the detection p-value of the probe
Avg_NBEADS Number of beads for the probe

Data table
ID_REF VALUE RAW_VALUE BEAD_STDERR Detection_Pval Avg_NBEADS
ILMN_2753809 4.27932083650885 24.33947 7.7420838845783 0.6152882 47
ILMN_2956159 13.1060822813177 4487.774 1340.93907624107 0 41
ILMN_2704576 4.22101312946027 24.02537 6.8725573258341 0.6817043 44
ILMN_3135931 13.5106503771691 6767.35 1655.72211121643 0 44
ILMN_2516699 13.2226307021588 5328.068 1921.63870501188 0 31
ILMN_2964873 13.3818472839267 6189.543 1821.81052185642 0 43
ILMN_1377920 13.4026755394071 6360.232 2084.36482137855 0 131
ILMN_2747959 8.40272250127209 155.1389 53.8580994546284 0 41
ILMN_2666018 5.14311715220766 30.00389 11.3890340746691 0.02506266 39
ILMN_2851231 11.4973830399134 1368.65 435.240088191604 0 46
ILMN_2948086 11.2776236487056 1155.283 333.96594 0 49
ILMN_2675747 12.619520849011 3353.727 1006.47839757163 0 35
ILMN_1258988 9.10906910215381 251.4077 67.5706655808983 0 56
ILMN_2876066 14.3217164163927 11490.69 4990.70514785855 0 43
ILMN_2588052 13.7837814497459 8780.459 2686.97676146485 0 84
ILMN_2658908 4.10377651590325 23.39695 7.630314 0.7807018 36
ILMN_2876071 14.2617429273087 11153.21 3741.54075299638 0 51
ILMN_2696977 13.3403776106269 6071.231 1252.10921606499 0 28
ILMN_2740432 11.3899375025766 1257.276 353.55414 0 36
ILMN_3126986 13.2799227727492 5693.902 1267.12860047505 0 43

Total number of rows: 25697

Table truncated, full table size 1645 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap