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Sample GSM872190 Query DataSets for GSM872190
Status Public on Mar 14, 2012
Title BMM_F2A_151_F
Sample type RNA
 
Source name Bone marrow derived macrophages from female DBA/2J x AKR/J F2 mice
Organism Mus musculus
Characteristics gender: female
strain: DBA/2JxAKR/J
cell type: bone marrow derived macrophages (BMM)
Extracted molecule total RNA
Extraction protocol standard as recommended by illumina
Label Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description Bone marrow was flushed with DMEM and cells were grown for 10-14 days in Bone marrow macrophages complete media
Data processing The data was preprocessed by Bioconductor lumi package (version 2.6.0). It was vst transformed and quantile normalized.
 
Submission date Feb 08, 2012
Last update date Mar 14, 2012
Contact name Jeff Hsu
E-mail(s) [email protected]
Phone 2162443723
Organization name Cleveland Clinic Lerner Research Institute
Department Cellular and Molecular Medicine
Lab Smith
Street address 9500 Euclid Ave
City Cleveland
State/province OH
ZIP/Postal code 44195
Country USA
 
Platform ID GPL6885
Series (1)
GSE35676 eQTL study of bone marrow derived macrophages and endothelial cells from DBA2xAKR F2 mice

Data table header descriptions
ID_REF
VALUE normalized signal intensity
RAW_VALUE raw signal intensity
BEAD_STDERR the standard error of the probe measurements
Detection_Pval the detection p-value of the probe
Avg_NBEADS Number of beads for the probe

Data table
ID_REF VALUE RAW_VALUE BEAD_STDERR Detection_Pval Avg_NBEADS
ILMN_2753809 5.12398214929988 38.95853 15.0642846246994 0.04385965 41
ILMN_2956159 13.61103989448 7098.229 2094.95430939824 0 34
ILMN_2704576 5.19010767018623 40.00425 12.2911644083738 0.03383459 43
ILMN_3135931 13.5106503771691 6651.726 1484.31695207599 0 44
ILMN_2516699 13.8206889427679 8792.895 2715.58140257249 0 44
ILMN_2964873 14.3217164163927 12442.98 2921.12322973373 0 42
ILMN_1377920 13.9824632190025 10226.17 3067.03628479942 0 145
ILMN_2747959 8.95172010710031 317.048 101.04203629495 0 28
ILMN_2666018 5.69548178959921 49.04143 20.4403861531935 0 41
ILMN_2851231 13.3602548714397 6073.763 1610.96308058813 0 42
ILMN_2948086 12.819512360874 3854.514 1303.16371631939 0 39
ILMN_2675747 12.9417732258916 4053.107 1000.16004512966 0 44
ILMN_1258988 11.96627590174 2333.038 761.8989 0 49
ILMN_2876066 14.0772940094986 11688.9 3250.06004912532 0 50
ILMN_2588052 14.1316861494688 11757.04 3883.49914649905 0 88
ILMN_2658908 9.00404898835872 326.821 76.57035377734 0 30
ILMN_2876071 13.9370770625561 10009.01 2596.88902804881 0 30
ILMN_2696977 13.3006311488776 5895.453 1754.82807550491 0 26
ILMN_2740432 12.4133193053513 3034.064 913.453055589153 0 41
ILMN_3126986 12.5442356768257 3204.159 914.310210881952 0 43

Total number of rows: 25697

Table truncated, full table size 1646 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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