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Sample GSM872186 Query DataSets for GSM872186
Status Public on Mar 14, 2012
Title BMM_F2A_147_F
Sample type RNA
 
Source name Bone marrow derived macrophages from female DBA/2J x AKR/J F2 mice
Organism Mus musculus
Characteristics gender: female
strain: DBA/2JxAKR/J
cell type: bone marrow derived macrophages (BMM)
Extracted molecule total RNA
Extraction protocol standard as recommended by illumina
Label Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description Bone marrow was flushed with DMEM and cells were grown for 10-14 days in Bone marrow macrophages complete media
Data processing The data was preprocessed by Bioconductor lumi package (version 2.6.0). It was vst transformed and quantile normalized.
 
Submission date Feb 08, 2012
Last update date Mar 14, 2012
Contact name Jeff Hsu
E-mail(s) [email protected]
Phone 2162443723
Organization name Cleveland Clinic Lerner Research Institute
Department Cellular and Molecular Medicine
Lab Smith
Street address 9500 Euclid Ave
City Cleveland
State/province OH
ZIP/Postal code 44195
Country USA
 
Platform ID GPL6885
Series (1)
GSE35676 eQTL study of bone marrow derived macrophages and endothelial cells from DBA2xAKR F2 mice

Data table header descriptions
ID_REF
VALUE normalized signal intensity
RAW_VALUE raw signal intensity
BEAD_STDERR the standard error of the probe measurements
Detection_Pval the detection p-value of the probe
Avg_NBEADS Number of beads for the probe

Data table
ID_REF VALUE RAW_VALUE BEAD_STDERR Detection_Pval Avg_NBEADS
ILMN_2753809 4.41535968244392 30.10985 10.7395979978217 0.4348371 39
ILMN_2956159 13.3213665215877 8224.803 2234.0856 0 36
ILMN_2704576 4.73227325014143 33.57865 13.4972290957655 0.1553885 55
ILMN_3135931 13.7532623321719 10804.46 3174.47158548624 0 42
ILMN_2516699 13.7837814497459 11371.12 3311.74018395411 0 40
ILMN_2964873 14.4496762423788 16497.87 4389.28501688515 0 32
ILMN_1377920 13.8947964597709 12432.38 3562.35797566578 0 140
ILMN_2747959 5.32360973210821 44.38176 16.3503807420229 0.005012531 38
ILMN_2666018 4.29370158915518 29.05799 8.4280578688094 0.5676692 34
ILMN_2851231 13.5106503771691 8836.634 2696.04388583587 0 33
ILMN_2948086 13.1630855393705 7339.668 2231.92050544765 0 59
ILMN_2675747 12.7099232003398 5280.963 1759.68256051219 0 48
ILMN_1258988 11.4502982368169 2402.337 728.109126180959 0 48
ILMN_2876066 13.8538136213455 11902.23 3040.7094 0 36
ILMN_2588052 14.2617429273087 13595.47 3674.84778049253 0 73
ILMN_2658908 4.47775927760163 30.68443 10.8720193075013 0.3809524 42
ILMN_2876071 13.9370770625561 12476.43 4433.30422810645 0 62
ILMN_2696977 13.1060822813177 7108.284 2521.82948891959 0 44
ILMN_2740432 12.1972056436141 3881.782 1454.86157295737 0 52
ILMN_3126986 12.972348249064 6196.744 1929.86910211249 0 45

Total number of rows: 25697

Table truncated, full table size 1642 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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