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Sample GSM872125 Query DataSets for GSM872125
Status Public on Mar 14, 2012
Title BMM_F2D_1_M
Sample type RNA
 
Source name Bone marrow derived macrophages from male DBA/2J x AKR/J F2 mice
Organism Mus musculus
Characteristics gender: male
strain: DBA/2JxAKR/J
cell type: bone marrow derived macrophages (BMM)
Extracted molecule total RNA
Extraction protocol standard as recommended by illumina
Label Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description Bone marrow was flushed with DMEM and cells were grown for 10-14 days in Bone marrow macrophages complete media
Data processing The data was preprocessed by Bioconductor lumi package (version 2.6.0). It was vst transformed and quantile normalized.
 
Submission date Feb 08, 2012
Last update date Mar 14, 2012
Contact name Jeff Hsu
E-mail(s) [email protected]
Phone 2162443723
Organization name Cleveland Clinic Lerner Research Institute
Department Cellular and Molecular Medicine
Lab Smith
Street address 9500 Euclid Ave
City Cleveland
State/province OH
ZIP/Postal code 44195
Country USA
 
Platform ID GPL6885
Series (1)
GSE35676 eQTL study of bone marrow derived macrophages and endothelial cells from DBA2xAKR F2 mice

Data table header descriptions
ID_REF
VALUE normalized signal intensity
RAW_VALUE raw signal intensity
BEAD_STDERR the standard error of the probe measurements
Detection_Pval the detection p-value of the probe
Avg_NBEADS Number of beads for the probe

Data table
ID_REF VALUE RAW_VALUE BEAD_STDERR Detection_Pval Avg_NBEADS
ILMN_2753809 4.32830181597398 -1.571118 25.8089061653632 0.593985 44
ILMN_2956159 13.6909941243974 14088.21 3376.8049471764 0 44
ILMN_2704576 4.62464578779079 2.223705 17.3354007867254 0.3195489 44
ILMN_3135931 13.6361716421311 13479.47 2874.3156 0 36
ILMN_2516699 13.61103989448 13291.33 3675.29195574527 0 48
ILMN_2964873 13.8947964597709 16345.49 2599.79827310997 0 40
ILMN_1377920 13.5619268851235 12500.52 3514.5902 0 121
ILMN_2747959 6.97876096496757 77.79227 34.10269755965 0 39
ILMN_2666018 4.76934019927802 4.03664 20.1560598575337 0.2130326 45
ILMN_2851231 12.619520849011 5933.409 1293.66939922687 0 44
ILMN_2948086 11.8335713169556 3320.238 965.8272 0 36
ILMN_2675747 12.697441244125 6133.269 1546.0048 0 64
ILMN_1258988 11.0742289538412 1978.915 579.929469878685 0 58
ILMN_2876066 14.4496762423788 23891.97 5228.55531132801 0 42
ILMN_2588052 13.8206889427679 16169.72 3653.11894473483 0 82
ILMN_2658908 4.75593709702413 3.877162 20.5003050071203 0.2255639 35
ILMN_2876071 13.8538136213455 16304.61 4381.3698 0 36
ILMN_2696977 13.4669907339079 11234.33 2235.95663883382 0 34
ILMN_2740432 12.206225677295 4329.812 1950.2110597174 0 45
ILMN_3126986 12.804187807043 6572.284 1632.69364349991 0 61

Total number of rows: 25697

Table truncated, full table size 1658 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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