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Sample GSM872114 Query DataSets for GSM872114
Status Public on Mar 14, 2012
Title BMM_F2A_49_M
Sample type RNA
 
Source name Bone marrow derived macrophages from male DBA/2J x AKR/J F2 mice
Organism Mus musculus
Characteristics gender: male
strain: DBA/2JxAKR/J
cell type: bone marrow derived macrophages (BMM)
Extracted molecule total RNA
Extraction protocol standard as recommended by illumina
Label Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description Bone marrow was flushed with DMEM and cells were grown for 10-14 days in Bone marrow macrophages complete media
Data processing The data was preprocessed by Bioconductor lumi package (version 2.6.0). It was vst transformed and quantile normalized.
 
Submission date Feb 08, 2012
Last update date Mar 14, 2012
Contact name Jeff Hsu
E-mail(s) [email protected]
Phone 2162443723
Organization name Cleveland Clinic Lerner Research Institute
Department Cellular and Molecular Medicine
Lab Smith
Street address 9500 Euclid Ave
City Cleveland
State/province OH
ZIP/Postal code 44195
Country USA
 
Platform ID GPL6885
Series (1)
GSE35676 eQTL study of bone marrow derived macrophages and endothelial cells from DBA2xAKR F2 mice

Data table header descriptions
ID_REF
VALUE normalized signal intensity
RAW_VALUE raw signal intensity
BEAD_STDERR the standard error of the probe measurements
Detection_Pval the detection p-value of the probe
Avg_NBEADS Number of beads for the probe

Data table
ID_REF VALUE RAW_VALUE BEAD_STDERR Detection_Pval Avg_NBEADS
ILMN_2753809 4.66199583027027 3.09359 24.1767948363384 0.2493734 41
ILMN_2956159 13.6361716421311 12705.73 3064.1313133408 0 40
ILMN_2704576 4.85771981470231 5.89901 20.3694139241458 0.1203008 41
ILMN_3135931 13.6651114672082 12992.18 2955.91826597094 0 53
ILMN_2516699 13.6909941243974 12993.14 3879.87499887079 0 29
ILMN_2964873 14.1316861494688 20756.53 4732.72003571979 0 46
ILMN_1377920 13.8206889427679 15293.29 4281.13591901507 0 129
ILMN_2747959 7.29235781030236 115.7846 70.0709304163981 0 37
ILMN_2666018 4.71615355764921 3.866288 16.5102258779218 0.20802 46
ILMN_2851231 13.4462459706025 11051.38 2572.94034362371 0 27
ILMN_2948086 12.697441244125 5969.739 1549.49075526122 0 40
ILMN_2675747 12.9082577234049 6980.727 1586.3764 0 49
ILMN_1258988 11.4973830399134 2805.833 893.668653420349 0 54
ILMN_2876066 14.1981373709814 22205.65 3864.80008468064 0 42
ILMN_2588052 14.0772940094986 19025.72 5490.22114924932 0 82
ILMN_2658908 4.96681629462301 7.569581 25.4837405460523 0.08145364 43
ILMN_2876071 13.9370770625561 16425.96 5079.3057 0 49
ILMN_2696977 13.3403776106269 10268.13 2555.83457280554 0 41
ILMN_2740432 11.913124460159 3650.856 1340.70444535377 0 44
ILMN_3126986 12.7357941752873 6252.679 1791.65265159923 0 44

Total number of rows: 25697

Table truncated, full table size 1654 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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