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Sample GSM872093 Query DataSets for GSM872093
Status Public on Mar 14, 2012
Title BMM_F2A_26_M
Sample type RNA
 
Source name Bone marrow derived macrophages from male DBA/2J x AKR/J F2 mice
Organism Mus musculus
Characteristics gender: male
strain: DBA/2JxAKR/J
cell type: bone marrow derived macrophages (BMM)
Extracted molecule total RNA
Extraction protocol standard as recommended by illumina
Label Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description Bone marrow was flushed with DMEM and cells were grown for 10-14 days in Bone marrow macrophages complete media
Data processing The data was preprocessed by Bioconductor lumi package (version 2.6.0). It was vst transformed and quantile normalized.
 
Submission date Feb 08, 2012
Last update date Mar 14, 2012
Contact name Jeff Hsu
E-mail(s) [email protected]
Phone 2162443723
Organization name Cleveland Clinic Lerner Research Institute
Department Cellular and Molecular Medicine
Lab Smith
Street address 9500 Euclid Ave
City Cleveland
State/province OH
ZIP/Postal code 44195
Country USA
 
Platform ID GPL6885
Series (1)
GSE35676 eQTL study of bone marrow derived macrophages and endothelial cells from DBA2xAKR F2 mice

Data table header descriptions
ID_REF
VALUE normalized signal intensity
RAW_VALUE raw signal intensity
BEAD_STDERR the standard error of the probe measurements
Detection_Pval the detection p-value of the probe
Avg_NBEADS Number of beads for the probe

Data table
ID_REF VALUE RAW_VALUE BEAD_STDERR Detection_Pval Avg_NBEADS
ILMN_2753809 4.06588239899459 -5.34718 18.4813409114942 0.8433584 39
ILMN_2956159 13.4462459706025 13475.22 3279.99510369652 0 29
ILMN_2704576 4.74406998530642 4.507892 25.3772360997041 0.1879699 45
ILMN_3135931 13.7224347345669 15268.43 2663.06894733222 0 33
ILMN_2516699 13.8206889427679 16998.67 4208.52105807013 0 37
ILMN_2964873 14.3217164163927 24811.82 4755.2743 0 49
ILMN_1377920 13.8947964597709 17370.66 4734.13975202828 0 124
ILMN_2747959 5.57927103443641 18.92244 24.3710630812829 0.003759399 30
ILMN_2666018 4.71003002073441 4.038745 20.4140116844595 0.2042606 41
ILMN_2851231 13.61103989448 14242.24 3670.08446404422 0 35
ILMN_2948086 12.9559107990732 8484.708 1852.59260361531 0 56
ILMN_2675747 12.6714769690571 6802.439 1516.22022925938 0 44
ILMN_1258988 12.0512459879294 4662.927 1209.08054055311 0 61
ILMN_2876066 14.2617429273087 24216.65 5432.54380479323 0 37
ILMN_2588052 14.0772940094986 19767.27 4969.201334789 0 71
ILMN_2658908 5.07991863011625 9.510616 17.5726364844833 0.05764411 23
ILMN_2876071 14.0303542221077 19725.31 6539.898 0 36
ILMN_2696977 13.1060822813177 10187.75 1732.4203293059 0 41
ILMN_2740432 12.2789096415766 5125.819 2236.71340641696 0 46
ILMN_3126986 12.925453261691 8422.391 1619.92735922484 0 35

Total number of rows: 25697

Table truncated, full table size 1658 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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