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Sample GSM872088 Query DataSets for GSM872088
Status Public on Mar 14, 2012
Title BMM_F2A_21_M
Sample type RNA
 
Source name Bone marrow derived macrophages from male DBA/2J x AKR/J F2 mice
Organism Mus musculus
Characteristics gender: male
strain: DBA/2JxAKR/J
cell type: bone marrow derived macrophages (BMM)
Extracted molecule total RNA
Extraction protocol standard as recommended by illumina
Label Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description Bone marrow was flushed with DMEM and cells were grown for 10-14 days in Bone marrow macrophages complete media
Data processing The data was preprocessed by Bioconductor lumi package (version 2.6.0). It was vst transformed and quantile normalized.
 
Submission date Feb 08, 2012
Last update date Mar 14, 2012
Contact name Jeff Hsu
E-mail(s) [email protected]
Phone 2162443723
Organization name Cleveland Clinic Lerner Research Institute
Department Cellular and Molecular Medicine
Lab Smith
Street address 9500 Euclid Ave
City Cleveland
State/province OH
ZIP/Postal code 44195
Country USA
 
Platform ID GPL6885
Series (1)
GSE35676 eQTL study of bone marrow derived macrophages and endothelial cells from DBA2xAKR F2 mice

Data table header descriptions
ID_REF
VALUE normalized signal intensity
RAW_VALUE raw signal intensity
BEAD_STDERR the standard error of the probe measurements
Detection_Pval the detection p-value of the probe
Avg_NBEADS Number of beads for the probe

Data table
ID_REF VALUE RAW_VALUE BEAD_STDERR Detection_Pval Avg_NBEADS
ILMN_2753809 4.2955920288811 -1.250951 12.9603961370057 0.6065163 37
ILMN_2956159 13.3602548714397 10495.68 2871.12823536607 0 30
ILMN_2704576 4.81587709529727 3.96593 12.8455565708996 0.1453634 47
ILMN_3135931 13.4881878545018 11095.12 1856.4007512857 0 51
ILMN_2516699 13.5369951607971 11364.66 2686.15979134624 0 33
ILMN_2964873 13.2226307021588 9062.644 2064.00218494807 0 40
ILMN_1377920 13.2419685347263 9161.254 2292.05959320488 0 127
ILMN_2747959 8.34849402149317 228.8988 58.5537590152373 0 38
ILMN_2666018 4.94506681059653 5.298835 15.4455956681073 0.1015038 51
ILMN_2851231 11.8389701555365 3041.531 726.0294114726 0 37
ILMN_2948086 11.2333750362008 1901.022 523.863397346463 0 47
ILMN_2675747 12.7481092613436 5978.788 1167.28030792457 0 27
ILMN_1258988 11.4614038950188 2209.271 595.399999050475 0 58
ILMN_2876066 14.4496762423788 25388.2 4911.67293153211 0 43
ILMN_2588052 13.61103989448 12528.19 3077.01770263769 0 91
ILMN_2658908 4.43110386528372 0.1035793 15.4853073198897 0.4536341 33
ILMN_2876071 14.1981373709814 21180.92 5228.4345188254 0 45
ILMN_2696977 13.4669907339079 11060.75 1805.06343052351 0 37
ILMN_2740432 12.4612578608207 4736.874 1414.57414312577 0 51
ILMN_3126986 13.1807706602325 8822.765 1848.53252202172 0 39

Total number of rows: 25697

Table truncated, full table size 1656 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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