NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM872063 Query DataSets for GSM872063
Status Public on Mar 14, 2012
Title ECC_F2D_40_M
Sample type RNA
 
Source name Primary aortic endothelial cells from male DBA/2J x AKR/J F2 mice
Organism Mus musculus
Characteristics gender: male
strain: DBA/2JxAKR/J
cell type: primary aortic endothelial cells
Extracted molecule total RNA
Extraction protocol standard as recommended by illumina
Label Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description Endothelial cells were prepared from mouse aortic rings grown on matrigel wells in endothelial cell media. After 10-14 days cultures were treated with dispase and and passaged to a second plate.
Data processing The data was preprocessed by Bioconductor lumi package (version 2.6.0). It was vst transformed and quantile normalized.
 
Submission date Feb 08, 2012
Last update date Mar 14, 2012
Contact name Jeff Hsu
E-mail(s) [email protected]
Phone 2162443723
Organization name Cleveland Clinic Lerner Research Institute
Department Cellular and Molecular Medicine
Lab Smith
Street address 9500 Euclid Ave
City Cleveland
State/province OH
ZIP/Postal code 44195
Country USA
 
Platform ID GPL6885
Series (1)
GSE35676 eQTL study of bone marrow derived macrophages and endothelial cells from DBA2xAKR F2 mice

Data table header descriptions
ID_REF
VALUE normalized signal intensity
RAW_VALUE raw signal intensity
BEAD_STDERR the standard error of the probe measurements
Detection_Pval the detection p-value of the probe
Avg_NBEADS Number of beads for the probe

Data table
ID_REF VALUE RAW_VALUE BEAD_STDERR Detection_Pval Avg_NBEADS
ILMN_2753809 13.7532623321719 24792.41 5205.07151886252 0 41
ILMN_2956159 14.1316861494688 27257.88 5856.47378365766 0 38
ILMN_2704576 13.6361716421311 23858.9 5243.18855106964 0 55
ILMN_3135931 13.6651114672082 24386.19 6203.21658755401 0 42
ILMN_2516699 14.1981373709814 27321.21 7472.1834569904 0 41
ILMN_2964873 14.4496762423788 30358.81 6927.07043478547 0 39
ILMN_1377920 14.0303542221077 26429.81 5937.38715459476 0 113
ILMN_2747959 13.0029423684596 18330.75 4798.57437544644 0 31
ILMN_2666018 14.2617429273087 27438.44 7622.38851192715 0 39
ILMN_2851231 13.9824632190025 26313.12 4717.1804454559 0 27
ILMN_2948086 13.0539499344965 18495.03 4621.89644442394 0 43
ILMN_2675747 13.3602548714397 21294.65 4828.73410906838 0 40
ILMN_1258988 10.5307594379784 4061.371 870.326217098652 0 53
ILMN_2876066 13.8947964597709 26110.25 9265.49027571655 0 38
ILMN_2588052 14.0772940094986 26807.01 7035.0064354728 0 63
ILMN_2658908 11.5932464018169 8160.584 2208.2043673444 0 28
ILMN_2876071 13.5369951607971 23081.33 8297.41710647163 0 48
ILMN_2696977 13.4669907339079 22244.68 5442.6692111761 0 30
ILMN_2740432 13.3403776106269 21240.05 5066.48527651936 0 46
ILMN_3126986 13.4026755394071 21712.76 4480.92397528465 0 43

Total number of rows: 25697

Table truncated, full table size 1644 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap