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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Nov 15, 2024 |
| Title |
Meth.Sample.155 |
| Sample type |
genomic |
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| Source name |
breast
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| Organism |
Homo sapiens |
| Characteristics |
tissue: breast
case_control: Case
age: 29
race: WHITE
dcis.pam50_subtype: NA
expressioncluster: NA
methylationcluster: 4
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| Treatment protocol |
N/A
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| Growth protocol |
N/A
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| Extracted molecule |
genomic DNA |
| Extraction protocol |
Nucleic Acids were extracted using AllPrep DNA/RNA FFPE kit (Qiagen, Valencia, CA) Extracted DNA was quantified by Qubit 2.0 fluorometer (Life Technologies, Carlsbad, CA) and stored at -80°C
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| Label |
Cy3 and Cy5
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| Label protocol |
Bisulfite-treated genomic DNA was restored using the Illumina Infinium HumanMethylation450K BeadChip Kit (WG-314-1003)
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| Hybridization protocol |
Standard Illumina hybridization protocol
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| Scan protocol |
Standard Illumina scanning protocol
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| Description |
Meth, Case, NA
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| Data processing |
The data were normalized using the FunNorm algorithm using minfi in R
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| Submission date |
Nov 07, 2024 |
| Last update date |
Nov 15, 2024 |
| Contact name |
Michael Considine |
| E-mail(s) |
[email protected]
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| Organization name |
Johns Hopkins University
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| Street address |
550 North Broadway
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| City |
Baltimore |
| State/province |
Maryland |
| ZIP/Postal code |
21205 |
| Country |
USA |
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| Platform ID |
GPL13534 |
| Series (1) |
| GSE281307 |
Multimodal Genome-wide Survey of Progressing and Non-progressing Breast Ductal Carcinoma In-Situ |
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| Supplementary file |
Size |
Download |
File type/resource |
| GSM8618487_3999431116_R02C01_Grn.idat.gz |
4.1 Mb |
(ftp)(http) |
IDAT |
| GSM8618487_3999431116_R02C01_Red.idat.gz |
4.1 Mb |
(ftp)(http) |
IDAT |
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