|
| Status |
Public on May 11, 2012 |
| Title |
71 Tumour |
| Sample type |
RNA |
| |
|
| Source name |
Tongue, FFPE
|
| Organism |
Homo sapiens |
| Characteristics |
gender: Woman
age: 60
tnm: T3N2bM0
quality (ctdiff): 5.4
detected genes (p<0.05): 10699
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNA were extracted using the High Pure RNA Paraffin Kit according to the manufacturer’s protocol
|
| Label |
Cy3 + Cy5
|
| Label protocol |
Labeling were performed according to manufacturers protocol (WG-DASL) (illumina)
|
| |
|
| Hybridization protocol |
Hybridization were performed according to manufacturers protocol (WG-DASL) (illumina)
|
| Scan protocol |
Arrays were scanned with a BeadArray Reader (Illumina) and data was extracted using GenomeStudio software (Illumina).
|
| Data processing |
Data were normalized using Cubiq spline. No background correction were done.
|
| |
|
| Submission date |
Dec 02, 2011 |
| Last update date |
May 11, 2012 |
| Contact name |
Matilda Rentoft |
| E-mail(s) |
[email protected]
|
| Organization name |
Umea University
|
| Department |
Medical Biosciences
|
| Lab |
Pathology
|
| Street address |
NUS
|
| City |
Umea |
| ZIP/Postal code |
90185 |
| Country |
Sweden |
| |
|
| Platform ID |
GPL14951 |
| Series (2) |
| GSE34105 |
Gene expression profiling of archival tongue carcinoma and normal tongue tissue (all samples) |
| GSE34115 |
Gene expression profiling of archival tongue carcinoma and normal tongue tissue |
|
